cluster # 8168

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Schistosoma mansoni
cluster # 8168 cluster # 8168 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8168#0 length = 1176 sequences # 4

consensus_8168#1 length = 549 sequences # 2

consensusID : consensus_8168#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1176
fasta sequence

                              [AAGGTCGACGATTAGAATTGTGTTACTAAGATTATCAGTGCGACAAATTTTGCACGTTCACTACAAAATGAGCCAAAAATACAATCACGAGAAGAATTTGCCTAACAGAAGAGAATTTTCTTGTGAGTGGGATGACAGTGCTGCAGATACTAAATCTTTCAGTCAAAACATTCCTCGTGATAAATTTTTAAAAGGCAGCAGTCATCAAAGTGACTTATCAAAAAGTTACAAGGAATCCGTTTTCTCTGGTAACTGGTCAGCAACGAATCGCGTCTCATCAAATGGACATGAAATTTGTGATGATTTGGATGATAGTAACGTTGAAGGTCTTGTGAGTGATGATGACAATGATTTTGATGAGGATGATGATGAAGAGGATGAAGACTGGGTTGCTTCCGATTATGAGAAAAAACGTTCTAGTCGCGCTTCTCGAACACAAATCACTGGTTCACGTAAAATTGGAAATAGTTGCAGTTCACATCGCAAAATTTCACATGGAGATCGTTCTCAACGTAGAATTGGCAGAAGTTTGTCAAGGACAGTTGCTTACAATCCAGGGAGTAGTCGCATTGTTTCTTCCAATAAATCTTCCAAATCCGTTGGTCGACCTAAAACTGTTAATCGCTATCAAGGTGGAAGTGCTAGAACTGTTCATACATCATCTGGTCGTAAGATTGCTACACGTCGAGTTGAAAAATCAAAGACAAATAATAGCGACCCACGAAAAGTATTTGATTCACTAATACCGAACGAACTAAAAAAACCTCGACAATGTTTCGGTCCTGGATGCACTCGAGCTGCAGCAAGACCAGATACAAAATATTGTTCGAATGAATGTGGACTTAAACTTGCCATCAAACGCTTAGAAACTCTACTACCAGAAAGTTTTCATGCTTGGTATCCTGACTTGTTTACGAAAGCTGGAAAGGCTCTTTCTGACTTAGAAAGGCTACCGGATTGTATGGCTACCGTTATCGACAAATTGCGTCTTAAAGAAATTAGTAAAGAACAGTGTGTAGTACACAATCGGTTAGTTGAATTAGAAATGGAGCATCAAAAGCTTACGGGACTTATCAGTCGAGCTCAAGAGCGAAAAACTGGACGAAATAATGAACAAATGCTTGCTGCGGTTGCTCACGATGCAGAACAAGTGGAACAGATGGAACCCATTATATG]

[+] EMBL AI067991             [AAGGTCGACGATTAGAATTGTGTTACTAAGATTATCAGTGCGACAAATTTTGCACGTTCACTACAAAATGAGCCAAAAATACAATCACGAGAAGAATTTGCCTAACAGAAGAGAATTTTCTTGTGAGTGGGATGACAGTGCTGCAGATACTAAATCTTTCAGTCAAAACATTCCTCGTGATAAATTTTTAAAAGGCAGCAGTCATCAAAGTGACTTATCAAAAAGTTACAAGGAATCCGTTTTCTCTGGTAACTGGTCAGCAACGAATCGCGTCTCATCAAATGGACATGAAATTTGTGATGATTTGGATGATAGTAACGTTGAAGGTCTTGTGAGTGATGATGACAATGATTTTGATGAGGATGATGATGAAGAGGATGAAGACTGGGTTGCTTCCGATTATGAGAAAAAACGTTCTAGTCGCGCTTCTCGAACACAAATCACTGGTTCACGTAAAATTGGAAATAGTTGCAGTTCACATCGCAAAATTTCACATGGAGATCGTTCTCAACGTAGAATTGGCAGAAGTTTGTCAAGGACAGTTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD081219             [                                                                                                                                                                                                                                       GGAATCCGTTTTCTCTGGTAACTGGTCAGCAACGAATCGCGTCTCATCAAATGGACATGAAATTTGTGATGATTTGGATGATAGTAACGTTGAAGGTCTTGTGAGTGATGATGACAATGATTTTGATGAGGATGATGATGAAGAGGATGAAGACTGGGTTGCTTCCGATTATGAGAAAAAACGTTCTAGTCGCGCTTCTCGAACACAAATCACTGGTTCACGTAAAATTGGAAATAGTTGCAGTTCACATCGCAAAATTTCACATGGAGATCGTTCTCAACGTAGAATTGGCAGAAGTTTGTCAAGGACAGTTGCTTACAATCCAGGGAGTAGTCGCATTGTTTCTTCCAATAAATCTTCCAAATCCGTTGGTCGACCTAAAACTGTTAATCGCTATCAAGGTGGAAGTGCTAGAACTGTTCATACATCATCTGGTCGTAAGATTGCTACACGTCGAGTTGAAAAATCAAAGACAAATAATAGCGACCCACGAAAAGTATTTGATTCACTAATACCGAACGAACTAAAAAAACCTCGACAATGTTTCGGTCCTGGATGCACTCGAGCTGCAGCAAGACCAGATACAAAATATTGTTCGAATGAATGTGGACTTAAACTTGCCATCAAACGCTTAGAAACTCTACTACCAGAAAGTTNTCATGCTTGGTATTCTGACTTGTTTACGAAAGC                                                                                                                                                                                                                                                               ]
[-] EMBL CD155418             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          cTCATACATCATCTGGTCGTAAGATTGCTACACGTCGAGTTGAAAAATCAAAGACAAATAATAGCGACCCACGAAAAGTATTTGATTCACTAATACCGAACGAACTAAAAAAACCTCGACAATGTTTCGGTCCTGGATGCACTCGAGCTGCAGCAAGACCAGATACAAAATACTGTTCGAATGAATGTGGACTTAAACTTGCCATCAAACGCTTAGAAACTCTACTACCAGAAAGTTTTCATGCTTGGTATCCTGACTTGTTTACGAAAGCTGGAAAGGCTCTTTCTGACTTAGAAAGGCTACCGGATTGTATGGCTACCGTTATCGACAAATTGCGTCTTAAAGAAATTAGTAAAGAACAGTGTGTAGTACACAATCGGTTAGTTGAATTAGAAATGGAGCATCAAAAGCTTACGGGACTTATCAGTCGAGCTCAAGAGCGAAAAACTGGACGAAATAATGAACAAATGCTTGCTGCGGTTGCTCACGA                                    ]
[-] EMBL CD131101             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ATGTGGACTTAAACTTGCCATCANACGCTTAGAAACTCTACTACCAGAAAGTTTTCATGCTTGGTATCCTGACTNGTTTACGAAAGCTGGAAAGGCTCTTTCTGACTTAGAAAGGCTACCGGATTGTATGGCTACCGTNATCGACAAATTGCGTCTTAAAGAAATTAGTAAAGAACAGTGTGTAGTACACAATCGGTTAGTTGAATTAGAAATGGAGCATCAAAAGCTTACGGGACTTATCAGTCGAGCTCAAGAGCGAAAAACTGGACGAAATAATGAACAAATGCTTGCTGCGGTTGCTCACGATGCAGAACAAGTGGAACAGATGGAACCCATTATATG]




>consensus_8168#0
AAGGTCGACGATTAGAATTGTGTTACTAAGATTATCAGTGCGACAAATTTTGCACGTTCA
CTACAAAATGAGCCAAAAATACAATCACGAGAAGAATTTGCCTAACAGAAGAGAATTTTC
TTGTGAGTGGGATGACAGTGCTGCAGATACTAAATCTTTCAGTCAAAACATTCCTCGTGA
TAAATTTTTAAAAGGCAGCAGTCATCAAAGTGACTTATCAAAAAGTTACAAGGAATCCGT
TTTCTCTGGTAACTGGTCAGCAACGAATCGCGTCTCATCAAATGGACATGAAATTTGTGA
TGATTTGGATGATAGTAACGTTGAAGGTCTTGTGAGTGATGATGACAATGATTTTGATGA
GGATGATGATGAAGAGGATGAAGACTGGGTTGCTTCCGATTATGAGAAAAAACGTTCTAG
TCGCGCTTCTCGAACACAAATCACTGGTTCACGTAAAATTGGAAATAGTTGCAGTTCACA
TCGCAAAATTTCACATGGAGATCGTTCTCAACGTAGAATTGGCAGAAGTTTGTCAAGGAC
AGTTGCTTACAATCCAGGGAGTAGTCGCATTGTTTCTTCCAATAAATCTTCCAAATCCGT
TGGTCGACCTAAAACTGTTAATCGCTATCAAGGTGGAAGTGCTAGAACTGTTCATACATC
ATCTGGTCGTAAGATTGCTACACGTCGAGTTGAAAAATCAAAGACAAATAATAGCGACCC
ACGAAAAGTATTTGATTCACTAATACCGAACGAACTAAAAAAACCTCGACAATGTTTCGG
TCCTGGATGCACTCGAGCTGCAGCAAGACCAGATACAAAATATTGTTCGAATGAATGTGG
ACTTAAACTTGCCATCAAACGCTTAGAAACTCTACTACCAGAAAGTTTTCATGCTTGGTA
TCCTGACTTGTTTACGAAAGCTGGAAAGGCTCTTTCTGACTTAGAAAGGCTACCGGATTG
TATGGCTACCGTTATCGACAAATTGCGTCTTAAAGAAATTAGTAAAGAACAGTGTGTAGT
ACACAATCGGTTAGTTGAATTAGAAATGGAGCATCAAAAGCTTACGGGACTTATCAGTCG
AGCTCAAGAGCGAAAAACTGGACGAAATAATGAACAAATGCTTGCTGCGGTTGCTCACGA
TGCAGAACAAGTGGAACAGATGGAACCCATTATATG

consensusID : consensus_8168#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 549
fasta sequence

                              [TTCGGCACGAGGCTGGTCGTAAGATTGCTACACGTCGAGTTGAAAAATCAAAGACAAATAATAGCGACCCACGAAAAGTATTTGATTCACTAATACCGAACGAACTAAAAAAACCTCGACAATGTTTCGGTCCTGGATGCACTCGAGCTGCAGCAAGACCAGATACAAAATATTGTTCGAATGAATGTGGACTTAAACTTGCCATCAAACGCTTAGAAACTCTACTACCAGAAAGTTTTCATGCTTGGTATCCTGACTTGTTTACGAAAGCTGGAAAGGCTCTTTCTGACTTAGAAAGGCTACCGGATTGTATGGCTACCGTTATCGACAAATTGCGTCTTAAAGAAATTAGTAAAGAACAGTGTGTAGTACACAATCGGTTAGTTGAATTAGAAATGGAGCATCAAAAGCTTACGGGACTTATCAGTCGAGCTCAAGAGCGAAAAACTGGACGAAATAATGAACAAATGCTTGCTGCGGTTGCTCACGATGCAGAACAAGTGGAACAGATGGAACCCATCATATGTGTTACGTGCTCAGCTGAAATCA]

[+] EMBL CD083715             [TTCGGCACGAGGCTGGTCGTAAGATTGCTACACGTCGAGTTGAAAAATCAAAGACAAATAATAGCGACCCACGAAAAGTATTTGATTCACTAATACCGAACGAACTAAAAAAACCTCGACAATGTTTCGGTCCTGGATGCACTCGAGCTGCAGCAAGACCAGATACAAAATATTGTTCGAATGAATGTGGACTTAAACTTGCCATCAAACGCTTAGAAACTCTACTACCAGAAAGTTTTCATGCTTGGTATCCTGACTTGTTTACGAAAGCTGGAAAGGCTCTTTCTGACTTAGAAAGGCTACCGGATTGTATGGCTACCGTTATCGACAAATTGCGTCTTAAAGAAATTAGTAAAGAACAGTGTGTAGTACACAATCGGTTAGTTGAATTAGAAATGGAGCATCAAAAGCTTACGGGACTTATCAGTCGAGCTCAAGAGCGAAAAACTGGACGAAATAATGAACAAATGCTTGCTGCGGTTGCTCACGATGCAGAACAAGTGGAACAGATGGAACCCATCATATGTGTTACGTGCTCAGCTGAAATCA]
[+] EMBL CD133252             [                      aATTGCTACACGTCGAGTTGAAAAATCAAAGACAAATATTAGCGACCCACGAAAAGTATTTGATTCACTAATACCGAACGAACTAAAAAAACCTCGACAATGTTTCGGTCCTGGATGCACTCGAGCTGCAGCAAGACCAGATACAAAATATTGTTCGAATGAATGTGGACTTAAACTTGCCATCAAACGCTTAGA                                                                                                                                                                                                                                                                                                                                            ]




>consensus_8168#1
TTCGGCACGAGGCTGGTCGTAAGATTGCTACACGTCGAGTTGAAAAATCAAAGACAAATA
ATAGCGACCCACGAAAAGTATTTGATTCACTAATACCGAACGAACTAAAAAAACCTCGAC
AATGTTTCGGTCCTGGATGCACTCGAGCTGCAGCAAGACCAGATACAAAATATTGTTCGA
ATGAATGTGGACTTAAACTTGCCATCAAACGCTTAGAAACTCTACTACCAGAAAGTTTTC
ATGCTTGGTATCCTGACTTGTTTACGAAAGCTGGAAAGGCTCTTTCTGACTTAGAAAGGC
TACCGGATTGTATGGCTACCGTTATCGACAAATTGCGTCTTAAAGAAATTAGTAAAGAAC
AGTGTGTAGTACACAATCGGTTAGTTGAATTAGAAATGGAGCATCAAAAGCTTACGGGAC
TTATCAGTCGAGCTCAAGAGCGAAAAACTGGACGAAATAATGAACAAATGCTTGCTGCGG
TTGCTCACGATGCAGAACAAGTGGAACAGATGGAACCCATCATATGTGTTACGTGCTCAG
CTGAAATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8168#0      AAGGTCGACGATTAGAATTGTGTTACTAAGATTATCAGTGCGACAAATTTTGCACGTTCA 60
consensus_8168#1      ------------------------------------------------------------
                                                                                  

consensus_8168#0      CTACAAAATGAGCCAAAAATACAATCACGAGAAGAATTTGCCTAACAGAAGAGAATTTTC 120
consensus_8168#1      ------------------------------------------------------------
                                                                                  

consensus_8168#0      TTGTGAGTGGGATGACAGTGCTGCAGATACTAAATCTTTCAGTCAAAACATTCCTCGTGA 180
consensus_8168#1      ------------------------------------------------------------
                                                                                  

consensus_8168#0      TAAATTTTTAAAAGGCAGCAGTCATCAAAGTGACTTATCAAAAAGTTACAAGGAATCCGT 240
consensus_8168#1      ------------------------------------------------------------
                                                                                  

consensus_8168#0      TTTCTCTGGTAACTGGTCAGCAACGAATCGCGTCTCATCAAATGGACATGAAATTTGTGA 300
consensus_8168#1      ------------------------------------------------------------
                                                                                  

consensus_8168#0      TGATTTGGATGATAGTAACGTTGAAGGTCTTGTGAGTGATGATGACAATGATTTTGATGA 360
consensus_8168#1      ------------------------------------------------------------
                                                                                  

consensus_8168#0      GGATGATGATGAAGAGGATGAAGACTGGGTTGCTTCCGATTATGAGAAAAAACGTTCTAG 420
consensus_8168#1      ------------------------------------------------------------
                                                                                  

consensus_8168#0      TCGCGCTTCTCGAACACAAATCACTGGTTCACGTAAAATTGGAAATAGTTGCAGTTCACA 480
consensus_8168#1      ------------------------------------------------------------
                                                                                  

consensus_8168#0      TCGCAAAATTTCACATGGAGATCGTTCTCAACGTAGAATTGGCAGAAGTTTGTCAAGGAC 540
consensus_8168#1      ------------------------------------------------------------
                                                                                  

consensus_8168#0      AGTTGCTTACAATCCAGGGAGTAGTCGCATTGTTTCTTCCAATAAATCTTCCAAATCCGT 600
consensus_8168#1      ------------------------------------------------------------
                                                                                  

consensus_8168#0      TGGTCGACCTAAAACTGTTAATCGCTATCAAGGTGGAAGTGCTAGAACTGTTCATACATC 660
consensus_8168#1      --------------------------------------------------TTCGGCACGA 10
                                                                        ***       

consensus_8168#0      ATCTGGTCGTAAGATTGCTACACGTCGAGTTGAAAAATCAAAGACAAATAATAGCGACCC 720
consensus_8168#1      GGCTGGTCGTAAGATTGCTACACGTCGAGTTGAAAAATCAAAGACAAATAATAGCGACCC 70
                        **********************************************************

consensus_8168#0      ACGAAAAGTATTTGATTCACTAATACCGAACGAACTAAAAAAACCTCGACAATGTTTCGG 780
consensus_8168#1      ACGAAAAGTATTTGATTCACTAATACCGAACGAACTAAAAAAACCTCGACAATGTTTCGG 130
                      ************************************************************

consensus_8168#0      TCCTGGATGCACTCGAGCTGCAGCAAGACCAGATACAAAATATTGTTCGAATGAATGTGG 840
consensus_8168#1      TCCTGGATGCACTCGAGCTGCAGCAAGACCAGATACAAAATATTGTTCGAATGAATGTGG 190
                      ************************************************************

consensus_8168#0      ACTTAAACTTGCCATCAAACGCTTAGAAACTCTACTACCAGAAAGTTTTCATGCTTGGTA 900
consensus_8168#1      ACTTAAACTTGCCATCAAACGCTTAGAAACTCTACTACCAGAAAGTTTTCATGCTTGGTA 250
                      ************************************************************

consensus_8168#0      TCCTGACTTGTTTACGAAAGCTGGAAAGGCTCTTTCTGACTTAGAAAGGCTACCGGATTG 960
consensus_8168#1      TCCTGACTTGTTTACGAAAGCTGGAAAGGCTCTTTCTGACTTAGAAAGGCTACCGGATTG 310
                      ************************************************************

consensus_8168#0      TATGGCTACCGTTATCGACAAATTGCGTCTTAAAGAAATTAGTAAAGAACAGTGTGTAGT 1020
consensus_8168#1      TATGGCTACCGTTATCGACAAATTGCGTCTTAAAGAAATTAGTAAAGAACAGTGTGTAGT 370
                      ************************************************************

consensus_8168#0      ACACAATCGGTTAGTTGAATTAGAAATGGAGCATCAAAAGCTTACGGGACTTATCAGTCG 1080
consensus_8168#1      ACACAATCGGTTAGTTGAATTAGAAATGGAGCATCAAAAGCTTACGGGACTTATCAGTCG 430
                      ************************************************************

consensus_8168#0      AGCTCAAGAGCGAAAAACTGGACGAAATAATGAACAAATGCTTGCTGCGGTTGCTCACGA 1140
consensus_8168#1      AGCTCAAGAGCGAAAAACTGGACGAAATAATGAACAAATGCTTGCTGCGGTTGCTCACGA 490
                      ************************************************************

consensus_8168#0      TGCAGAACAAGTGGAACAGATGGAACCCATTATATG----------------------- 1176
consensus_8168#1      TGCAGAACAAGTGGAACAGATGGAACCCATCATATGTGTTACGTGCTCAGCTGAAATCA 549
                      ****************************** *****