cluster # 817

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Schistosoma mansoni
cluster # 817 cluster # 817 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_817#0 length = 367 sequences # 1

consensus_817#1 length = 293 sequences # 1

consensusID : consensus_817#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 367
fasta sequence

                              [TTCCAGCCAGTATAGCTCGATTGGTTCATCACGTTAGGCAAGCCCGACCACTACGTCAAGGCCTCAACGATCAGGCCAAGTATCAGTGGACACTGGTGTTGCAAAATGAGCATAAAGATAACCTTAATTAAAGCATATTTAGACAAATCGATACCTTCTACTGTCATAGTATACACCACAGAAACCCAAGTATTACTTAGTATAGCTAATTAGTTGAGTGTCCTCATTATATGATGGAACAGTATACTAGTACGACCACCTATAAGGATTTACCAAAAGTACGAACCTACTTTCCTAAATCACATTCCATTTTTTGCATAATGATTGAATGATATTGCTCTAATAGATTCATAACCTTTTCTTTAAG]

[+] EMBL CD179682             [TTCCAGCCAGTATAGCTCGATTGGTTCATCACGTTAGGCAAGCCCGACCACTACGTCAAGGCCTCAACGATCAGGCCAAGTATCAGTGGACACTGGTGTTGCAAAATGAGCATAAAGATAACCTTAATTAAAGCATATTTAGACAAATCGATACCTTCTACTGTCATAGTATACACCACAGAAACCCAAGTATTACTTAGTATAGCTAATTAGTTGAGTGTCCTCATTATATGATGGAACAGTATACTAGTACGACCACCTATAAGGATTTACCAAAAGTACGAACCTACTTTCCTAAATCACATTCCATTTTTTGCATAATGATTGAATGATATTGCTCTAATAGATTCATAACCTTTTCTTTAAG]




>consensus_817#0
TTCCAGCCAGTATAGCTCGATTGGTTCATCACGTTAGGCAAGCCCGACCACTACGTCAAG
GCCTCAACGATCAGGCCAAGTATCAGTGGACACTGGTGTTGCAAAATGAGCATAAAGATA
ACCTTAATTAAAGCATATTTAGACAAATCGATACCTTCTACTGTCATAGTATACACCACA
GAAACCCAAGTATTACTTAGTATAGCTAATTAGTTGAGTGTCCTCATTATATGATGGAAC
AGTATACTAGTACGACCACCTATAAGGATTTACCAAAAGTACGAACCTACTTTCCTAAAT
CACATTCCATTTTTTGCATAATGATTGAATGATATTGCTCTAATAGATTCATAACCTTTT
CTTTAAG

consensusID : consensus_817#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence

                              [ATATCATGGGATAAGGTGAAGTATGGTGGTGAGTGCCGATCTTTCCTAACCCCACCCTTCCTCAGTGGAAGAAACTGTCGCCTTTATGCTATTTGTCTGAGGAGACACCTTACTATCATCACACCTTTATACAGTCAGCAGTACGACTTCACCTTCGGACCTTGAGTTTGTGGGTGGTAGTCTTACCGCTCTTCAACCGACCTGTCTGGTATGGTAGGATCTTGAGAAACGATTGTCCCTGCCAGTATAGCTCGACTGGTTCATCACGATAGGCAAGCCCGACCACCACGTCA]

[+] EMBL CD134435             [ATATCATGGGATAAGGTGAAGTATGGTGGTGAGTGCCGATCTTTCCTAACCCCACCCTTCCTCAGTGGAAGAAACTGTCGCCTTTATGCTATTTGTCTGAGGAGACACCTTACTATCATCACACCTTTATACAGTCAGCAGTACGACTTCACCTTCGGACCTTGAGTTTGTGGGTGGTAGTCTTACCGCTCTTCAACCGACCTGTCTGGTATGGTAGGATCTTGAGAAACGATTGTCCCTGCCAGTATAGCTCGACTGGTTCATCACGATAGGCAAGCCCGACCACCACGTCA]




>consensus_817#1
ATATCATGGGATAAGGTGAAGTATGGTGGTGAGTGCCGATCTTTCCTAACCCCACCCTTC
CTCAGTGGAAGAAACTGTCGCCTTTATGCTATTTGTCTGAGGAGACACCTTACTATCATC
ACACCTTTATACAGTCAGCAGTACGACTTCACCTTCGGACCTTGAGTTTGTGGGTGGTAG
TCTTACCGCTCTTCAACCGACCTGTCTGGTATGGTAGGATCTTGAGAAACGATTGTCCCT
GCCAGTATAGCTCGACTGGTTCATCACGATAGGCAAGCCCGACCACCACGTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_817#0      TTCCAGCCAGTATAGCTCGATTGGTTCATCACGTTAGGCAAGCCCGACCACTACGTCAAG 60
consensus_817#1      ----------------------------------------------------ATATCATG 8
                                                                         *  *** *

consensus_817#0      GCCTCAACGATCAGGCCAAGTATCAGTGGACACTGGTGTTGCAAAATGAGCATAAAGATA 120
consensus_817#1      G-------GATAAGGTGAAGTAT-GGTGGTGAGTGCCGATCTTTCCTAACCCCACCCTT- 59
                     *       *** ***  ******  ****  * **  * *      * * *  *    * 

consensus_817#0      ACCTTAATTAAAGCATATTTAGACAAATCGATACCTTCTACTGTCATAGTATACACCACA 180
consensus_817#1      -CCTCAGTGGAAGAAACTGTCGCC---TTTATGCTAT---TTGTCTGAGGAGACACCTTA 112
                      *** * *  *** *  * * * *   *  ** *  *    ****  ** * *****  *

consensus_817#0      GAAACCCAAGTATTACTTAGTATAGCTAATTAGTTGAGTGTCCTCATTATATGATGGAAC 240
consensus_817#1      CTATC---ATCACACCTTTATACAGTCAGC-AGTACGACTTCACCTTCGGACCTTGAGTT 168
                       * *   *  *   ***  ** **  *   ***      **  * *   *   **    

consensus_817#0      AGTA--TACTAGTACGACCACCTATAAG--GATTTACCAAAAGTACGAACCTACTTTCCT 296
consensus_817#1      TGTGGGTGGTAGTCTTACCGCTCTTCAACCGACCTGTCT--GGTATGGTAGGATCTTGAG 226
                      **   *  ****   *** *   * *   **  *  *    *** *     *  **   

consensus_817#0      AAATCACATTCCATTTTTTGCATAATGATTGAATGATATTGCTCTAATAGATT--CATAA 354
consensus_817#1      AAACGATTGTCC-CTGCCAGTATAGC--TCGACTGGT-TCATCACGATAGGCAAGCCCGA 282
                     ***  *   ***  *    * ***    * ** ** * *       ****     *   *

consensus_817#0      CCTTTTCTTTAAG 367
consensus_817#1      CCACCACGTCA-- 293
                     **    * * *