cluster # 8174

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Schistosoma mansoni
cluster # 8174 cluster # 8174 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8174#0 length = 430 sequences # 5

consensus_8174#1 length = 199 sequences # 1

consensusID : consensus_8174#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 430
fasta sequence

                              [ACGTGGTGCTCCCCTCGTGGCTAAGGCTTATAGCAGCTCACGTTTATAATCATGTCCAAAAGCGAGTTAGCATGTGTTTACGCTGCCTTGATGTTAGCTGACGATGACATCGACGTTACAGCTGACAAAATAAATACCGTCCTAAAGGCTGCTAACATCAAGTTTGTTGAATCATATCTTCCAAACCTTTTTGCAACGGCTTTGAACGGAAAGAATGTCAGAGATCTATTGATGTCCATGGGGTCTGCTGCACCTTCTGCTGTTGCCGCCCCGACGTCGGCCCCAGTGGCAGCAGCGGCGGGTGGTGGTGCCGAAAAGGGTAAAGAACCTGCAAAAGAAGAAAAGAAACCAGTTTCTGATGATGAATCTGATGACTCGATGGGCTTTGACTTGTTCGGTTAATTGCATCTTATGTACAGAATATATTGGA]

[+] EMBL AI977611             [ACGTGGTGCTCCCCTCGTGGCTAAGGCTTATAGCAGCTCACGTTTATAATCATGTCCAAAAGCGAGTTAGCATGTGTTTACGCTGCCTTGATGTTAGCTGACGATGACATCGACGTTACAGCTGACAAAATAAATACCGTCCTAAAGGCTGCTAACATCAAGTTTGTTGAATCATATCTTCCAAACCTTTTTGCAACGGCTTTGAACGGAAAGAATGTCAGAGATCTATTGATGTCCATGGGGTCTGCTGCACCTTCTGCTGTTGCCGCCCCGACGTCGGCCCCAGTGGCAGCAGCGGCGGGTGGTGGTGCCGAAAAGGGTAAAGAACCTGCAAAAGAAGAAAAGAAACCAGTTTCTGATGATGAATCTGATGACTCGATGGGCTTTGACTTGTTCGGTTAATTGCATCTTATGTACAGAATATATTGGA]
[-] EMBL CD146149             [         TCCCCTCGTGGCTAAGGCTTATAGCAGCTCACGTTTATAATCATGTCCAAAAGCGAGTTAGCATGTGTTTACGCTGCCTTGATGTTAGCTGACGATGACATCGACGTTACAGCTGACAAAATAAATACCGTCCTAAAGGCTGCTAACATCAAGTTTGTTGAATCATATCTTCCAAACCTTTTTGCAACGGCTTTGAACGGAAAGAATGTCAGAGATCTATT                                                                                                                                                                                                        ]
[+] EMBL AI977728             [                     TAAGGCTTATAGCAGCTCACGTTTATAATCATGTCCAAAAGCGAGTTAGCATGTGTTTACGCTGCCTTGATGCTAGCTGACGATGACATCGACGTTACAGCTGACAAAATAAATACCGTCCTAAAGGCTGCTAACATCAAGTTTGTTGAATCATATCTTCCAAACCTTTTTGCAACGGCTTTGAACGGAAAGAATGTCAGAGATCTATTGATGTCCATGGGGTCTGCTGCACCTTCTGCTGTTGCCGCCCCGACGTCGGCCCCAGTGGCAGCAGCGGCGGGTGGTGGTGCCGAAAAGGGTAAAGAACCTGCAAAAGAAGAAAAGAAACCAGTTTCTGATGATGAATCTGATGACTCGATGGGCTTTGACTTGTTCGGTTAATTGCATCTTATGTACAGAATATATTGGA]
[+] EMBL CD137823             [                      AAGGCTTATAGCAGCTCACGTTTATAATCATGTCCAAAAGCGAGTTAGCATGTGTTTACGCTGCCTTGATGTTAGCTGACGATGACATCGACGTTACAGCTGACAAAATAAATACCGTCCTAAAGGCTGCTAACATCAAGTTTGTTGAATCATATCTTCCAAACCTTTTTGCAACGGCTTTGAACGGAAAGAATGTCAGAGATCTATTGATGTCCATGGGGTCTGCTGCACCTTCTGCTGTTGCCGCCCCGACGTCGGCCCCAGTGGCGGCAGCGGCGGGTGGTGGTGCCGAAAAGGGTAAAGAACCTGCAAAAGAAGAAAAGAAACCAGTTTCTGATGATGAATCTGATGACTCGATGGGCTTTGACTTGTTCGGTTAATTGCATCTTATGTACAGAATATA     ]
[-] EMBL CD146205             [                        GGCTTATAGCAGCTAACGTTTATAATCATGTCCAAAAGCGAGTTAGCATGTGTGTACGCTGCCTTGATGTTAGCTGACGATGACATCGACGTTACAGCTGACAAAATAAATACCGTCCTAAAGGCTGCTAACATCAAGTTTGTTGAATCATATCTTCCAAACCTTTTTGCAACGGCTTTGAACGGAAAGAATGTCAGAGATCTATT                                                                                                                                                                                                        ]




>consensus_8174#0
ACGTGGTGCTCCCCTCGTGGCTAAGGCTTATAGCAGCTCACGTTTATAATCATGTCCAAA
AGCGAGTTAGCATGTGTTTACGCTGCCTTGATGTTAGCTGACGATGACATCGACGTTACA
GCTGACAAAATAAATACCGTCCTAAAGGCTGCTAACATCAAGTTTGTTGAATCATATCTT
CCAAACCTTTTTGCAACGGCTTTGAACGGAAAGAATGTCAGAGATCTATTGATGTCCATG
GGGTCTGCTGCACCTTCTGCTGTTGCCGCCCCGACGTCGGCCCCAGTGGCAGCAGCGGCG
GGTGGTGGTGCCGAAAAGGGTAAAGAACCTGCAAAAGAAGAAAAGAAACCAGTTTCTGAT
GATGAATCTGATGACTCGATGGGCTTTGACTTGTTCGGTTAATTGCATCTTATGTACAGA
ATATATTGGA

consensusID : consensus_8174#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 199
fasta sequence

                              [TATTCTGTACATAAGATGCAATTAACCGACAAGTCAAAGCCATCGGTCATCAGATTCATCATCAGAACTGTTCGGCTCGTTGCAGTCTTACGGTCGACACACGCGTGCTGCACGGGCGACGTCGGCGCGACGACGGCGCACACAGAGGCAGCAGCCATGCATCATAGATCGCTCATGCTGCTCAGGCGTCAAGTGAGTA]

[+] EMBL SMAA69265            [TATTCTGTACATAAGATGCAATTAACCGACAAGTCAAAGCCATCGGTCATCAGATTCATCATCAGAACTGTTCGGCTCGTTGCAGTCTTACGGTCGACACACGCGTGCTGCACGGGCGACGTCGGCGCGACGACGGCGCACACAGAGGCAGCAGCCATGCATCATAGATCGCTCATGCTGCTCAGGCGTCAAGTGAGTA]




>consensus_8174#1
TATTCTGTACATAAGATGCAATTAACCGACAAGTCAAAGCCATCGGTCATCAGATTCATC
ATCAGAACTGTTCGGCTCGTTGCAGTCTTACGGTCGACACACGCGTGCTGCACGGGCGAC
GTCGGCGCGACGACGGCGCACACAGAGGCAGCAGCCATGCATCATAGATCGCTCATGCTG
CTCAGGCGTCAAGTGAGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8174#0      ACGTGGTGCTCCCCTCGTGGCTAAGGCTTATAGCAGCTCACGTTTATAATCATGTCCAAA 60
consensus_8174#1      ------------------------------------------------------------
                                                                                  

consensus_8174#0      AGCGAGTTAGCATGTGTTTACGCTGCCTTGATGTTAGCTGACGATGACATCGACGTTACA 120
consensus_8174#1      ------------------------------------------------------------
                                                                                  

consensus_8174#0      GCTGACAAAATAAATACCGTCCTAAAGGCTGCTAACATCAAGTTTGTTGAATCATATCTT 180
consensus_8174#1      ------------TATTCTGTAC-ATAAGATGCAATTAACCGACAAGTCAAAGC-CATCGG 46
                                   ** * ** * * * * *** *  * *      **  ** *  ***  

consensus_8174#0      CCAAACCTTTTTGCAACGGCTTTGAACGGAAAGAATGTCAGAGATCTATTGATGTC-CAT 239
consensus_8174#1      TCATCAGATTCATCATCAGAACTGTTCGGCT----CGTTGCAGTCTTACGGTCGACACAC 102
                       **     **   ** * *   **  ***       **   **   **  *  * * ** 

consensus_8174#0      GGGGTCTGCTGCACCTTCTGCTGTTGCCGCCCCGACGTCGGCCCCAGTGGCAGCAGCGGC 299
consensus_8174#1      GCG---TGCTGCACGGGC-GACGTCGGCGCGACGACGGCGCACACAGAGGCAGCAGCCAT 158
                      * *   ********   * *  ** * ***  ***** **  * *** *********   

consensus_8174#0      GGGTGGTGGTGCCGAAAAGGGTAAAGAACCTGCAAAAGAAGAAAAGAAACCAGTTTCTGA 359
consensus_8174#1      GCATCATAG-ATCGCTCATGCTGCTCAGGCGTCAAGTGAGTA------------------ 199
                      *  *  * *   **   * * *    *  *  ***  **  *                  

consensus_8174#0      TGATGAATCTGATGACTCGATGGGCTTTGACTTGTTCGGTTAATTGCATCTTATGTACAG 419
consensus_8174#1      ------------------------------------------------------------
                                                                                  

consensus_8174#0      AATATATTGGA 430
consensus_8174#1      -----------