These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8175#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 796 fasta sequence [ACTCGTCCATACCGAATGTTAGATACTGCTGATGAACCTGTTTCGACTGTGAATAGTTCTCCCAAAAATATGGACAAACTAAAATTACTATCTAGAAACTATGAAACCTCTTCGTCTTCAGATATTTCATCTGACAGTGAACCTGAATTAATTGAAAAACCTGTAATCCAGAAACCTAAGGATCCAGCCTTTTTAATTCCACCCGACTATATCTTACAGTCAGTGAAAGACTTGACTGCAGATATAAAGGTTTCGTTACTCGGGAAAATCTCTCAAGTTTTTGATAAATACGTTGTCATCCGTTCCATTAATTCAGCAGTTGTATTGAATGAGCGATCTGTGCTTTTTCTAGAAGACGGCAAGCATTTGGGTGAGGTTTATGAGACATTTGGCCCAGTACGTACTCCATTTTATCTGGTGATCCTTTCCGAATCATTTTGTGTACCCAAGTTAAGAAATGATCGAATCTCAGGTCCACACAATTGTACACTTTCAAAATCAACGAATTATTCTGAAAGTTTAGAACCTCAAACACCAAGTGAATCAGTTACTAATACTCAACTTGATAATTACAATTCACCTAATGATAGCAACAGTCAGAATCGTAGTGAAATTGAAATATCAATTACTGACAACAGTAATGCTATCAATTATGAAGAAAAAAGAAAGGTTAATTCTTCATTGAAAGAAGTATCCGTGTTTTATGCACCCGATATGCCTGAACTCACTATTCCTGTCTTTTACAACCAATTAATTGCTAGTAACATCAAAGGATCAGATGCATCTTGGGTAGGCG] [+] EMBL CD112075 [ACTCGTCCATACCGAATGTTAGATACTGCTGATGAACCTGTTTCGACTGTGAATAGTTCTCCCAAAAATATGGACAAACTAAAATTACTATCTAGAAACTATGAAACCTCTTCGTCTTCAGATATTTCATCTGACAGTGAACCTGAATTAATTGAAAAACCTGTAATCCAGAAACCTAAGGATCCAGCCTTTTTAATTCCACCCGACTATATCTTACAGTCAGTGAAAGACTTGACTGCAGATATAAAGGTTTCGTTACTCGGGAAAATCTCTCAAGTTTTTGATAAATACGTTGTCATCCGTTCCATTAATTCAGCAGTTGTATTGAATGAGCGATCTGTGCTTTTTCTAGAAGACGGCAAGCATATGGGTGAGGTTTATGAGACATTTGGCCCAGTACGTACTCCATTTTATCTGGTGATCCTTTCCGAATCATTTTGTGTACCCAAGTTAAGAAATGATCGAATC ] [+] EMBL CD112121 [ACTCGTCCATACCGAATGTTAGATACTGCTGATGAACCTGTTTCGACTGTGAATAGTTCTCCCAAAAATATGGACAAACTAAAATTACTATCTAGAAACTATGAAACCTCTTCGTCTTCAGATATTTCATCTGACAGTGAACCTGAATTAATTGAAAAACCTGTAATCCAGAAACCTAAGGATCCAGCCTTTTTAATTCCACCCGACTATATCTTACAGTCAGTGAAAGACTTGACTGCAGATATAAAGGTTTCGTTACTCGGGAAAATCTCTCAAGTTTTTGATAAATACGTTGTCATCCGTTCCATTAATTCAGCAGTTGTATTGAATGAGCGATCTGTGCTTTTTCTAGAAGACGGCAAGCATTTGGGTGAGGTTTATGAGACATTTGGCCCAGTACGTACTCCATTTTATCTGGTGATCCTTTCCGAATCATTTTGTGTACCCAAGTTAAGAAATGATCGAAT ] [-] EMBL CD112189 [ GATGAACCTGTTTCGACTGTGAATAGTTCTCCCAAAAATATGGACAAACTAAAATTACTATCTAGAAACTATGAAACCTCTTCGTCTTCAGATATTTCATCTGACAGTGAACCTGAATTAATTGAAAAACCTGTAATCCAGAAACCTAAGGATCCAGCCTTTTTAATTCCACCCGACTATATCTTACAGTCAGTGAAAGACTTGACTGCAGATATAAAGGTTTCGTTACTCGGGAAAATCTCTCAAGTTTTTGATAAATACGTTGTCATCCGTTCCATTAATTCAGCAGTTGTATTGAATGAGCGATCTGTGCTTTTTCTAGAAGACGGCAAGCATTTGGGTGAGGTTTATGAGACATTTGGCTCAGTACGTACTCCATTTTATCTGGTGATCCTTTCCGAATCATTTTGTGTACCCAAGTTAAGAAATGATCGAATC ] [-] EMBL CD112077 [ GACAAAGTAAAATTACTATCTAGAAACTATGAAACCTCTTCGTCTTCAGATATTTCATCTGACAGTGAACCTGAATTAATTGAAAAACCTGTAATCCAGAAACCTAAGGATCCAGCCTTTTTAATTCCACCCGACTATATCTTACAGTCAGTGAAAGACTTGACTGCAGATATAAAGGTTTCGTTACTCGGGAAAATCTCTCAAGTTTTTGATAAATACGTTGTCATCCGTTCCATTAATTCAGCAGTTGTATTGAATGAGCGATCTGTGCTTTTTCTAGAAGACGGCAAGCATTTGGGTGAGGTTTATGAGACATTTGGCTCAGTACGTACTCCATTTTATCTGGTGATCCTTTCCGAATCATTTTGTGTACCCAAGTTAAGAAATGATCGAATC ] [+] EMBL CD160320 [ CATTTGGGTGAGGTTTATGAGACATTTGGCCCAGTACGTACTCCATTTTATCTGGTGATCCTTTCCGAATCATTTTGTGTACCCAAGTTAAGAAATGATCGAATCTCAGGTCCACACAATTGTACACTTTCAAAATCAACGAATTATTCTGAAAGTTTAGAACCTCAAACACCAAGTGAATCAGTTACTAATACTCAACTTGATAATTACAATTCACCTAATGATAGCAACAGTCAGAATCGTAGTGAAATTGAAATATCAATTACTGACAACAGTAATGCTATCAATTATGAAGAAAAAAGAAAGGTTAATTCTTCATTGAAAGAAGTATCCGTGTTTTATGCACCCGATATGCCTGAACTCACTATTCCTGTCTTTTACAACCAATTAATTGCTAGTAACATCAAAGGATCAGATGCATCTTGGGTAGGCG] consensusID : consensus_8175#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 208 fasta sequence [ACTCGTCCATACCGAATGTTAGATACTGCTGATTTGTCATCCGTTCCATTAATTCAGCAGTTGTATTGAATGAGCGATCTGTGCTTTTTCTAGAAGACGGCAAGCATTTGGGTGAGGTTTATGAGACATTTGGCCCAGTACGTACTCCATTTTATCTGGTGATCCTTTCCGAATCATTTTGTGTACCCAAGTTAAGAAATGATCGAAT] [+] EMBL CD112589 [ACTCGTCCATACCGAATGTTAGATACTGCTGATTTGTCATCCGTTCCATTAATTCAGCAGTTGTATTGAATGAGCGATCTGTGCTTTTTCTAGAAGACGGCAAGCATTTGGGTGAGGTTTATGAGACATTTGGCCCAGTACGTACTCCATTTTATCTGGTGATCCTTTCCGAATCATTTTGTGTACCCAAGTTAAGAAATGATCGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8175#0 ACTCGTCCATACCGAATGTTAGATACTGCTGATGAACCTGTTTCGACTGTGAATAGTTCT 60 consensus_8175#1 ------------------------------------------------------------ consensus_8175#0 CCCAAAAATATGGACAAACTAAAATTACTATCTAGAAACTATGAAACCTCTTCGTCTTCA 120 consensus_8175#1 ------------------------------------------------------------ consensus_8175#0 GATATTTCATCTGACAGTGAACCTGAATTAATTGAAAAACCTGTAATCCAGAAACCTAAG 180 consensus_8175#1 ------------------------------------------------------------ consensus_8175#0 GATCCAGCCTTTTTAATTCCACCCGACTATATCTTACAGTCAGTGAAAGACTTGACTGCA 240 consensus_8175#1 ------------------------------------------------------------ consensus_8175#0 GATATAAAGGTTTCGTTACTCGGGAAAATCTCTCAAGTTTTTGATA--AATACGTTGTCA 298 consensus_8175#1 -----------------ACTCGTCCATAC----CGAATGTTAGATACTGCTGATTTGTCA 39 ***** * * * * * ** **** * ****** consensus_8175#0 TCCGTTCCATTAATTCAGCAGTTGTATTGAATGAGCGATCTGTGCTTTTTCTAGAAGACG 358 consensus_8175#1 TCCGTTCCATTAATTCAGCAGTTGTATTGAATGAGCGATCTGTGCTTTTTCTAGAAGACG 99 ************************************************************ consensus_8175#0 GCAAGCATTTGGGTGAGGTTTATGAGACATTTGGCCCAGTACGTACTCCATTTTATCTGG 418 consensus_8175#1 GCAAGCATTTGGGTGAGGTTTATGAGACATTTGGCCCAGTACGTACTCCATTTTATCTGG 159 ************************************************************ consensus_8175#0 TGATCCTTTCCGAATCATTTTGTGTACCCAAGTTAAGAAATGATCGAATCTCAGGTCCAC 478 consensus_8175#1 TGATCCTTTCCGAATCATTTTGTGTACCCAAGTTAAGAAATGATCGAAT----------- 208 ************************************************* consensus_8175#0 ACAATTGTACACTTTCAAAATCAACGAATTATTCTGAAAGTTTAGAACCTCAAACACCAA 538 consensus_8175#1 ------------------------------------------------------------ consensus_8175#0 GTGAATCAGTTACTAATACTCAACTTGATAATTACAATTCACCTAATGATAGCAACAGTC 598 consensus_8175#1 ------------------------------------------------------------ consensus_8175#0 AGAATCGTAGTGAAATTGAAATATCAATTACTGACAACAGTAATGCTATCAATTATGAAG 658 consensus_8175#1 ------------------------------------------------------------ consensus_8175#0 AAAAAAGAAAGGTTAATTCTTCATTGAAAGAAGTATCCGTGTTTTATGCACCCGATATGC 718 consensus_8175#1 ------------------------------------------------------------ consensus_8175#0 CTGAACTCACTATTCCTGTCTTTTACAACCAATTAATTGCTAGTAACATCAAAGGATCAG 778 consensus_8175#1 ------------------------------------------------------------ consensus_8175#0 ATGCATCTTGGGTAGGCG 796 consensus_8175#1 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||