These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8178#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 757 fasta sequence [TGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTGCTCTGGGCATTATTCCTTCGGTACTTCATAAGCCGACAAGAGTGGTTGGTTGATGAGTTTCAGGTGAGTTGACGGGTGTTTGTGTGATGTGTGTCGATAGGCGTTGCGATGTGATTTGATTTGAGTTGTGTAGATGTGTTTGCAGATGGTTTGATTGTTTGATTGTTGATTTTCGCAGTGTATTTTGGTGGCGGTGTTGTTGTTGTTGTTATGTGAATGTTGAATAGTTGATATTAGTTTCATGATGAATTGACCATACATTCGCGGTTTCCACTGACTCGAGAATTGATGTTGTTCTCCGTCACTTGGATGTCTGACTTTTGTGTTTGTGTTTGTGCGTGTGTGTTTATTGTGACGAGTTAGTGATATGTTGCTTTTGTGTTTAATTTGTTTATTTTGTACGAGCGAAGACGGCGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGCTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTG] [+] EMBL CD162074 [TGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTGCTCTGGGCATTATTCCTTCGGTACTTCATAAGCCGACAAGAGTGGTTGGTTGATGAGTTTCAGGTGAGTTGACGGGTGTTTGTGTGATGTGTGTCGATAGGCGTTGCGATGTGATTTGATTTGAGTTGTGTAGATGTGTTTGCAGATGGTTTGATTGTTTGATTGTTGATTTTCGCAGTGTATTTTGGTGGCGGTGTTGTTGTTGTTGTTATGTGAATGTTGAATAGTTGATATTAGTTTCATGATGAATTGACCATACATTCGCGGTTTCCACTGACTCGAGAATTGATGTTGTTCTCCGTCACTTGGATGTCTGACTTTTGTGTTTGTGTTTGTGCGTGTGTGTTTATTGTGACGAGTTAGTGATATGTTGCTTTTGTGTTTAATTTGTTTATTTTGTACGAGCGAAGACGGCGGTGTTGGTTTGGCGA ] [-] EMBL CD151645 [ TGTGTTTGTGTTTGCGCGTGTGTGTTTATTGTGACGAGTTAGTGATATGTTGTTTTTGTGTGTAATTTGTTTATTTTGTAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGCTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTG] consensusID : consensus_8178#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [CTCCGTCACTTGGATGTCTGACTTTTGTGTTTGTGTTTGTGCGTGTGTGTTTATTGTGACGAGTTAGTGATATGTTGTTTTTGTGTTTAATTTGTTTATTTTGTAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAACAGGTGTATTTGTATCTGAGAGATGTGAGCGAGCGAGTGTATTTTGGAATTGGAGTGTACTGACTAGACGGTAGTATAGTTTTTGTGGCGGCGGCGGTTGGCGGCGTAGAGAGTGGTTGGTTGATGAGTTTCAGGTGAGGTTAGACAGGTGTTTGTGTGATGTTGTTCTCCGTCACTTGGATGTCTGACTTTTGTGTTTGTGTTTGTGCGTGTGTGTTTATTGTGACGAGTTAGTGATATGTTGTTTTAGTGTTTAATTTGTTTATTTTGTAGGAGCGAAGACGGTGGTGTTGGTTTGG] [+] EMBL CD155294 [CTCCGTCACTTGGATGTCTGACTTTTGTGTTTGTGTTTGTGCGTGTGTGTTTATTGTGACGAGTTAGTGATATGTTGTTTTTGTGTTTAATTTGTTTATTTTGTAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAACAGGTGTATTTGTATCTGAGAGATGTGAGCGAGCGAGTGTATTTTGGAATTGGAGTGTACTGACTAGACGGTAGTATAGTTTTTGTGGCGGCGGCGGTTGGCGGCGTAGAGAGTGGTTGGTTGATGAGTTTCAGGTGAGGTTAGACAGGTGTTTGTGTGATGTTGTTCTCCGTCACTTGGATGTCTGACTTTTGTGTTTGTGTTTGTGCGTGTGTGTTTATTGTGACGAGTTAGTGATATGTTGTTTTAGTGTTTAATTTGTTTATTTTGTAGGAGCGAAGACGGTGGTGTTGGTTTGG] consensusID : consensus_8178#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence [TTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAAAGAGGA] [-] EMBL CD064795 [TTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAAAGAGGA] consensusID : consensus_8178#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 225 fasta sequence [GTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGCGTACTGACTAGACGGGGGTATAGTTTTTGTGGCGACGGCAGTGGCGGCGGAGTATAGTTTTTGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAA] [+] EMBL CD184068 [GTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGCGTACTGACTAGACGGGGGTATAGTTTTTGTGGCGACGGCAGTGGCGGCGGAGTATAGTTTTTGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAA] [+] EMBL CD183992 [GTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGCGTACTGACTAGACGGGGGTATAGTTTTTGTGGCGACGGCAGTGGCGGCGGAGTATAGTTTTTGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8178#1 ------------------------------------------------------------ consensus_8178#3 ------------------------------------------------------------ consensus_8178#0 TGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTGCTCTGGGCATTATTCCTTC 60 consensus_8178#2 ------------------------------------------------------------ consensus_8178#1 ------------------------------------------------------------ consensus_8178#3 ------------------------------------------------------------ consensus_8178#0 GGTACTTCATAAGCCGACAAGAGTGGTTGGTTGATGAGTTTCAGGTGAGTTGACGGGTGT 120 consensus_8178#2 ------------------------------------------------------------ consensus_8178#1 ------------------------------------------------------------ consensus_8178#3 ------------------------------------------------------------ consensus_8178#0 TTGTGTGATGTGTGTCGATAGGCGTTGCGATGTGATTTGATTTGAGTTGTGTAGATGTGT 180 consensus_8178#2 ------------------------------------------------------------ consensus_8178#1 ------------------------------------------------------------ consensus_8178#3 ------------------------------------------------------------ consensus_8178#0 TTGCAGATGGTTTGATTGTTTGATTGTTGATTTTCGCAGTGTATTTTGGTGGCGGTGTTG 240 consensus_8178#2 ------------------------------------------------------------ consensus_8178#1 ------------------------------------------------------------ consensus_8178#3 ------------------------------------------------------------ consensus_8178#0 TTGTTGTTGTTATGTGAATGTTGAATAGTTGATATTAGTTTCATGATGAATTGACCATAC 300 consensus_8178#2 ------------------------------------------------------------ consensus_8178#1 -------------------------------------CTCCGTCACTTGGATGTCTGACT 23 consensus_8178#3 ------------------------------------------------------------ consensus_8178#0 ATTCGCGGTTTCCACTGACTCGAGAATTGATGTTGTTCTCCGTCACTTGGATGTCTGACT 360 consensus_8178#2 ------------------------------------------------------------ consensus_8178#1 TTTGTGTTTGTGTTTGTGCGTGTGTGTTTATTGTGACGAGTTAGTGATATGTTGTTTTTG 83 consensus_8178#3 ------------------------------------------------------------ consensus_8178#0 TTTGTGTTTGTGTTTGTGCGTGTGTGTTTATTGTGACGAGTTAGTGATATGTTGCTTTTG 420 consensus_8178#2 ------------------------------------------------------------ consensus_8178#1 TGTTTAATTTGTTTATTTTGTAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGA 143 consensus_8178#3 -------GTTGATGAGTTT-CAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGA 52 consensus_8178#0 TGTTTAATTTGTTTATTTTGTACGAGCGAAGACGGCGGTGTTGGTTTGGCGATGGAGAGA 480 consensus_8178#2 ------------------------------------------------------------ consensus_8178#1 GTGGACTGTGAACAGGTGTATTTGTATCTGAGAGATGTGAGCGAGCGAGTGTATTTTGGA 203 consensus_8178#3 GTGGACTGTGAAGAGGTGTAGTTGTATC-GAGAGATGTGAGCGAGCGAGTGTATTTTTGA 111 consensus_8178#0 GTGGACTGTGAAGAGGTGTAGTTGTATC-GAGAGATGTGAGCGAGCGAGTGTATTTTTGA 539 consensus_8178#2 ---------------------TTGTATC-GAGAGATGTGAGCGAGCGAGTGTATTTTTGA 38 ******* **************************** ** consensus_8178#1 ATTGGAGTGTACTGACTAGACGGTAGTATAGTTTTTGTGGCGGCGGCGGTTGGCGGCGTA 263 consensus_8178#3 ATTGGAGCGTACTGACTAGACGGGGGTATAGTTTTTGTGGCGACGGCAGT-GGCGGCG-- 168 consensus_8178#0 ATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGT-GGCGGCGAC 598 consensus_8178#2 ATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGT-GGCGGCGAC 97 ******* *************** ***************** **** ** ******* consensus_8178#1 GAGAGTGGTTGGTTGATGAGTTTCAGGTGAGGTTAGACAG--GTGTTTGTGTGATGTTGT 321 consensus_8178#3 GAGTATAGTTTTTGTGGCGGCGACAAGAGTGGTTGGTTGAT-GAGTTTCAGGAGCGAA-- 225 consensus_8178#0 AAGAGTGGTTGGTTGATGAGTTTCAGGAGCGA--AGACGGTGGTGTTGGCTTGGCGATGG 656 consensus_8178#2 AAGAGTGGTTGGTTGATGAGTTTCAGGAGCGA--AGACGGTGGTGTTGGTTTGGCGATGG 155 ** * *** * * ** * * * * * *** * consensus_8178#1 TCTCCGTC-ACTTGGATGTCTGACTTTTGTGTTTGTGTTTGTGCGTGTGTGTTTATTGTG 380 consensus_8178#3 ------------------------------------------------------------ consensus_8178#0 AGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTT 716 consensus_8178#2 AGAGAGTGGACTGTGAAGA--GGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGG 213 consensus_8178#1 ACGAGTTAGTGATATGTTGTTTTAGTGTTTAATTTGTTTATTTTGTAGGAGCGAAGACGG 440 consensus_8178#3 ------------------------------------------------------------ consensus_8178#0 TTGAATTGGAG-TGTACTGACTAGACGGGAGTATAGTTTTTG------------------ 757 consensus_8178#2 AGCGAAGACGGTGGTGTTGGTTTGGCGATGGAAAGAGGA--------------------- 252 consensus_8178#1 TGGTGTTGGTTTGG 454 consensus_8178#3 -------------- consensus_8178#0 -------------- consensus_8178#2 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||