These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8179#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 667 fasta sequence [ATAATCAAACCGTAGTTTATTCATGGATCCAAGGGTCAACGGCTTGTTTATATTGACATAGTTCTTGTGGAGAAAACCATAAGTTGATTTCCCTGTTAGCACTTTCAGTTGAGTCGGATCCATGGACAACATTTCTCCCTACATCTTGGCAGTAGTCTCCCCTTATTGATCCAGGACAACTTGCTTCAGGTTTAGTAGCACCTAACATTGTACGTCCGTTCTCAACAACCTTACGCCCTTCAAATACCATTGGTACAACAGGCCCAGATGACATATATGCAACTAGTTTCGGGAAAAATGAAAGGGATTTGAGTGCTTCGTAATGCGTCTGAAGCAGCTGTTCTGAGGCATGCATCATCTTTATAGCTACAAGTTTATAGCCTCGCCTTTCAAATCGTTGTATAACCTCCCCAACAAGACCTCGTTGCACGCCATCAGGTTTGACCATAATAAAGTGATGAGCGTTTGCCAGATGAATGATGACTATGACTGTGATAGCGATGATGATCTGAATGATGAGAGCGATGACGTTCTGGGTGTTTATGTAAAGTATGCCTTTGATATTGGTGTTCTGATGCATGGCGTTTATGGTGACTATCTCTTGATCCTGAAATGCAACGATGACAGTAACAAGTTTGATGACGATAGTAACCATGCTGTTTATGAA] [-] EMBL CD143934 [ATAATCAAACCGTAGTTTATTCATGGATCCAAGGGTCAACGGCTTGTTTATATTGACATAGTTCTTGTGGAGAAAACCATAAGTTGATTTCCCTGTTAGCACTTTCAGTTGAGTCGGATCCATGGACAACATTTCTCCCTACATCTTGGCAGTAGTCTCCCCTTATTGATCCAGGACAACTTGCTTCAGGTTTAGTAGCACCTAACATTGTACGTCCGTTCTCAACAACCTTACGCCCTTCAAATACCATTGGTACAACAGGCCCAGATGACATATATGCAACCAGTTTCGGGAAAAATGAAAGGGATTTGAGTGCTTCGTAATGCGTCTGAAGCAGCTGTTCTGAGGCATGCATCATCTTTATAGCTACAAGTTTATAGCCTCGCCTTTCAAATCGTTGTATAACCTCC ] [-] EMBL CD143941 [ TAATCAAACCGTAGTTTATTCATGGATCCAAGGGTCAACGGCTTGTTTATATTGACATAGTTCTTGTGGAGAAAACCATAAGTTGGTTTCCCTGTTAGCACTTTCAGTTGAGTCGGATCCATGGACAACATTTCTCCCTACATCTTGGCAGTAGTCTCCCCTTATTGATCCAGGACAACTTGCTTCAGGTTTAGTAGCACCTAACATTGTACGTCCGTTCTCAACAACCTTACGCCCTTCAAATACCATTGGTACAACAGGCCCAGATGACATATATGCAACTAGTTTCGGGAAAAATGAAAGGGATTTGAGTGCTTCGTAATGCGTCTGAAGCAGCTGTTCTGAGGCATGCATCATCTTTATAGCTACAAGTTTATAGCCTCGCCTTTCAAATCGTTGTATAACCTCC ] [+] EMBL CD180390 [ ATTGTACGTCCGTTCTCAACAACCTTACGCCCTTCAAATACCATTGGTACAACAGGCCCAGATGACATATATGCAACTAGTTTCGGGAAAAATGAAAGGGATTTGAGTGCTTCGTAATGCGTCTGAAGCAGCTGTTCTGAGGCATGCATCATCTTTATAGCTACAAGTTTATAGCCTCGCCTTTCAAATCGTTGTATAACCTCCCCAACAAGACCTCGTTGCACGCCATCAGGTTTGACCATAATAAAGTGATGAGCGTTTGCCAGATGAATGATGACTATGACTGTGATAGCGATGATGATCTGAATGATGAGAGCGATGACGTTCTGGGTGTTTATGTAAAGTATGCCTTTGATATTGGTGTTCTGATGCATGGCGTTTATGGTGACTATCTCTTGATCCTGAAATGCAACGATGACAGTAACAAGTTTGATGACGATAGTAACCATGCTGTTTATGAA] consensusID : consensus_8179#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 319 fasta sequence [ACAACTTGCTTCAGGTTTAGTAGCACCTAACATTGTACGTCCGTTCTCAACAACCTTACGCCCTTCAAATACCATTGGTACAACAGGCCCAGATGACATATATGCAACTAGTTTCGGGAAAAATGAAAGGGATTTGAGTGCTTCGTAATGCGTCTGAAGCAGCTGTTCTGAGGCATGCATCATCTTTATAGCTACAAGTTTATAGCCTCGCCTTTCAAATCGTTGTATAACCTCCCCAACAAGACCTCGTTGCACGCCATCAGGTTTGACCATAATAAACGTCCGTTCCATGATGAGATAACAACCTCAAATAAATTTG] [-] EMBL CD137986 [ACAACTTGCTTCAGGTTTAGTAGCACCTAACATTGTACGTCCGTTCTCAACAACCTTACGCCCTTCAAATACCATTGGTACAACAGGCCCAGATGACATATATGCAACTAGTTTCGGGAAAAATGAAAGGGATTTGAGTGCTTCGTAATGCGTCTGAAGCAGCTGTTCTGAGGCATGCATCATCTTTATAGCTACAAGTTTATAGCCTCGCCTTTCAAATCGTTGTATAACCTCCCCAACAAGACCTCGTTGCACGCCATCAGGTTTGACCATAATAAACGTCCGTTCCATGATGAGATAACAACCTCAAATAA ] [-] EMBL CD138072 [ACAACTTGCTTCAGGTTTAGTAGCACCTAACATTGTACGTCCGTTCTCAACAACCTTACGCCCTTCAAATACCATTGGTACAACAGGCCCAGATGACATATATGCAACTAGTTTCGGGAAAAATGAAAGGGATTTGAGTGCTTCGTAATGCGTCTGAAGCAGCTGTTCTGAGGCATGCATCATCTTTATAGCTACAAGTTTATAGCCTCGCCTTTCAAATCGTTGTATAACCTCCCCAACAAGACCTCGTTGCACGCCATCAGGTTTGACCATAATAAACGTCCGTTCCATGATGAGATAACAACCTCAAATAA ] [-] EMBL CD098011 [ ACTTGCTTCAGGTTTAGTAGCACCTAACATTGTACGTCCGTTCTCAACAACCTTACGCCCTTCAAATACCATTGGTACAACAGGCCCAGATGACATATATGCAACTAGTTTCGGGAAAAATGAAAGGGATTTGAGTGCTTCGTAATGCGTCTGAAGCAGCTGTTCTGAGGCATGCATCATCTTTATAGCTACAAGTTTATAGCCTCGCCTTTCAAATCGTTGTATAACCTCCCCAACAAGACCTCGTTGCACGCCATCAGGTTTGACCATAATAAACGTCCGTTCCATGATGAGATAACAACCTCAAATAAATTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8179#0 ATAATCAAACCGTAGTTTATTCATGGATCCAAGGGTCAACGGCTTGTTTATATTGACATA 60 consensus_8179#1 ------------------------------------------------------------ consensus_8179#0 GTTCTTGTGGAGAAAACCATAAGTTGATTTCCCTGTTAGCACTTTCAGTTGAGTCGGATC 120 consensus_8179#1 ------------------------------------------------------------ consensus_8179#0 CATGGACAACATTTCTCCCTACATCTTGGCAGTAGTCTCCCCTTATTGATCCAGGACAAC 180 consensus_8179#1 -------------------------------------------------------ACAAC 5 ***** consensus_8179#0 TTGCTTCAGGTTTAGTAGCACCTAACATTGTACGTCCGTTCTCAACAACCTTACGCCCTT 240 consensus_8179#1 TTGCTTCAGGTTTAGTAGCACCTAACATTGTACGTCCGTTCTCAACAACCTTACGCCCTT 65 ************************************************************ consensus_8179#0 CAAATACCATTGGTACAACAGGCCCAGATGACATATATGCAACTAGTTTCGGGAAAAATG 300 consensus_8179#1 CAAATACCATTGGTACAACAGGCCCAGATGACATATATGCAACTAGTTTCGGGAAAAATG 125 ************************************************************ consensus_8179#0 AAAGGGATTTGAGTGCTTCGTAATGCGTCTGAAGCAGCTGTTCTGAGGCATGCATCATCT 360 consensus_8179#1 AAAGGGATTTGAGTGCTTCGTAATGCGTCTGAAGCAGCTGTTCTGAGGCATGCATCATCT 185 ************************************************************ consensus_8179#0 TTATAGCTACAAGTTTATAGCCTCGCCTTTCAAATCGTTGTATAACCTCCCCAACAAGAC 420 consensus_8179#1 TTATAGCTACAAGTTTATAGCCTCGCCTTTCAAATCGTTGTATAACCTCCCCAACAAGAC 245 ************************************************************ consensus_8179#0 CTCGTTGCACGCCATCAGGTTTGACCATAATAAAGTGATGAGCGTTTGCCAGATGAATGA 480 consensus_8179#1 CTCGTTGCACGCCATCAGGTTTGACCATAATAAA----CGTCCGTTCCATGATGAGATAA 301 ********************************** * **** ** * consensus_8179#0 TGACTATGACTGTGATAGCGATGATGATCTGAATGATGAGAGCGATGACGTTCTGGGTGT 540 consensus_8179#1 CAACCTCAAATAAATTTG------------------------------------------ 319 ** * * * * consensus_8179#0 TTATGTAAAGTATGCCTTTGATATTGGTGTTCTGATGCATGGCGTTTATGGTGACTATCT 600 consensus_8179#1 ------------------------------------------------------------ consensus_8179#0 CTTGATCCTGAAATGCAACGATGACAGTAACAAGTTTGATGACGATAGTAACCATGCTGT 660 consensus_8179#1 ------------------------------------------------------------ consensus_8179#0 TTATGAA 667 consensus_8179#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||