cluster # 8181

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Schistosoma mansoni
cluster # 8181 cluster # 8181 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8181#0 length = 962 sequences # 4

consensus_8181#1 length = 514 sequences # 1
consensus_8181#2 length = 108 sequences # 1

consensusID : consensus_8181#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 962
fasta sequence

                              [CCAGAGGCTGTGGAGTGAAAAGTATTTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAAGCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAGACTGCTTCATTCCAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCAACGGTTAGTTGACCAGATCTCCATTTATTTATCACCTTCAAACAACAGCAATAAATAAGTACTGTGTGCAAAATATTTCACCATTTCTAATAATAATTGTGACACTAACACACTCGCAAAACACAAACTATCTTCTGTCTTCACTACTCTCCTCTTACTGGAACAATAAAATTAGATCAGATCAGTCTTCATTTCCGATTATTACAGTTACTATTATTGTGATTTGGGCATTGCCCCACACAGTTGCAAGGGGGAAGAGCCTCTAGGGTGTAGAACACATCCTCTCATCTTGCCAATAAAACAACCACTATAAACCAAACGTAATAGAAGA-TGTTCACGTTGGACAATAGAGACTTGAGTCATTCAACAATTCGGCAATCCGCTTACAGTAAGTGCTGATGAGTGAGATAGTAGAATTAACAGAAGTAATAGTAGCAGATGACGACCACCCAACCCGTCCATTATTATCATCTATAGGTAAATAGTGAGTAACACAGATAGACTGAGGAGGAGGAAGAAGAAGAAGAAGAAGAGGAAGTAAAACATACAAAATTATCAACTATTAAGCAAAGGTGACAAAACACATTAAAACACTACCACCGAAGACGTATCACCAACCCGGAAATCACAACAGTTTACAATCACCTCACCCCACTTCCCATTTCCAGCTTGTTGTTATTGTTATTACCACTACCAACAACAACAAGCTGGAAATGGGAA]

[+] EMBL CD063853             [CCAGAGGCTGTGGAGTGAAAAGTATTTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAAGCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAGACTGCTTCATTCCAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCAACGGTTAGTTGACCAGATCTCCATTTATTTATCACCTTCAAACAACAGCAATAAATAAGTACTGTGTGCAAAATATTTCACCATTTCTAATAATAATTGTGACACTAACACACTCGCAAAACACAAACTATCTTCTGTCTTCACTACTCTCCTCTTACTGGAACAATAAAATTAGATCAGATCAGTCTTCATTTCCGATTATTACAGTTACTATTATTGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD199779             [                                                                                                                                                                                                                                                                                                                                                                                                                           AATTAGATCAGATCAGTCTTCATTTCCGATTATTACAGTTACTATTATGGGAATTTGGGCATTGCCCCACACAGTTGCAAGGGGGAAGAGCCTCTAGGGTGTAGAACACATCCTCTCATCTTGCCAATAAAACAACCACTATAAACCAAACGTAATAGAAGA TGTTCACGTTGGACAATAGAGACTTGAGTCATTCAACAATTCGGC                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD085519             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      aaaaacaCTCATCTTGCCAATAAAACAACCACTATAAACCAAACGTAATAGAAGATTGTTCACGTTGGACAATAGAGACTTGAGTCATTCAACAATTCGGCAATCCGCTTACAGTAAGTGCTGATGAGTGAGATAGTAGAATTAACAGAAGTAATAGTAGCAGATGACGACCACCCAACCCGTCCATTATTATCATCTATAGGTAAATAGTGAGTAACACAGATAGACTGAGGAGGAGGAAGAAGAAGAAGAAGAAGAGGAAGTAAAACATACAAAATTATCAACTATTAAGCAAAGGTGACAAAACACATTAAAACACTACCACCGAAGACGTATCACCAACCCGGAAATCACAACAGTTTACAA                                                                               ]
[-] EMBL CD066030             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ACT CCGTCGAAGACGTATCACCAACCCGGAAATCACAACAGTTTACAATCACCTCACCCCACTTCCCATTTCCAGCTTGTTGTTATTGTTATTACCACTACCAACAACAACAAGCTGGAAATGGGAA]




>consensus_8181#0
CCAGAGGCTGTGGAGTGAAAAGTATTTAACATGGATTTTACACATCATTGAGACGTCATG
TTAGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAA
GCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAGACTGCTTCAT
TCCAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGT
CAACGGTTAGTTGACCAGATCTCCATTTATTTATCACCTTCAAACAACAGCAATAAATAA
GTACTGTGTGCAAAATATTTCACCATTTCTAATAATAATTGTGACACTAACACACTCGCA
AAACACAAACTATCTTCTGTCTTCACTACTCTCCTCTTACTGGAACAATAAAATTAGATC
AGATCAGTCTTCATTTCCGATTATTACAGTTACTATTATTGTGATTTGGGCATTGCCCCA
CACAGTTGCAAGGGGGAAGAGCCTCTAGGGTGTAGAACACATCCTCTCATCTTGCCAATA
AAACAACCACTATAAACCAAACGTAATAGAAGATGTTCACGTTGGACAATAGAGACTTGA
GTCATTCAACAATTCGGCAATCCGCTTACAGTAAGTGCTGATGAGTGAGATAGTAGAATT
AACAGAAGTAATAGTAGCAGATGACGACCACCCAACCCGTCCATTATTATCATCTATAGG
TAAATAGTGAGTAACACAGATAGACTGAGGAGGAGGAAGAAGAAGAAGAAGAAGAGGAAG
TAAAACATACAAAATTATCAACTATTAAGCAAAGGTGACAAAACACATTAAAACACTACC
ACCGAAGACGTATCACCAACCCGGAAATCACAACAGTTTACAATCACCTCACCCCACTTC
CCATTTCCAGCTTGTTGTTATTGTTATTACCACTACCAACAACAACAAGCTGGAAATGGG
AA

consensusID : consensus_8181#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence

                              [CGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAAGCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAAACTGCTTCATTCCAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCAACGGTTAGTTGACCAGATCTCCATTTATTTATCACCTTCAAACAACAGCAATAAATAAGTACTGTGTGCAAAATATTTCACCATTTCTAATAATAATTGTGACACTAACACACTCGCAAAACACAAACTATCTTCTGTCTTCACTACTCTCCTCTTACTGGAACAATAAAATTAGATCAGATCGGTCTTCATTTCCGATTATTACAGTTACTATTATTGTGATTTTTGCATTGACCCACACAGTTGTCAAGGTGGAATAGACTTGAGGAGAGGAACA]

[-] EMBL CD127799             [CGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAAGCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAAACTGCTTCATTCCAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCAACGGTTAGTTGACCAGATCTCCATTTATTTATCACCTTCAAACAACAGCAATAAATAAGTACTGTGTGCAAAATATTTCACCATTTCTAATAATAATTGTGACACTAACACACTCGCAAAACACAAACTATCTTCTGTCTTCACTACTCTCCTCTTACTGGAACAATAAAATTAGATCAGATCGGTCTTCATTTCCGATTATTACAGTTACTATTATTGTGATTTTTGCATTGACCCACACAGTTGTCAAGGTGGAATAGACTTGAGGAGAGGAACA]




>consensus_8181#1
CGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTTAGT
TGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAAGCTAC
CAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAAACTGCTTCATTCCAA
AAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCAACG
GTTAGTTGACCAGATCTCCATTTATTTATCACCTTCAAACAACAGCAATAAATAAGTACT
GTGTGCAAAATATTTCACCATTTCTAATAATAATTGTGACACTAACACACTCGCAAAACA
CAAACTATCTTCTGTCTTCACTACTCTCCTCTTACTGGAACAATAAAATTAGATCAGATC
GGTCTTCATTTCCGATTATTACAGTTACTATTATTGTGATTTTTGCATTGACCCACACAG
TTGTCAAGGTGGAATAGACTTGAGGAGAGGAACA

consensusID : consensus_8181#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 108
fasta sequence

                              [GCCGAACACCACTCCGCTGAAGACGTATCACCAACCCGGAAATCACAACAGTTTACAATCACCTCACCCCACTTCCCATTTCCAGGTTGGTGATACGTCTTCGACGGA]

[+] EMBL CD150522             [GCCGAACACCACTCCGCTGAAGACGTATCACCAACCCGGAAATCACAACAGTTTACAATCACCTCACCCCACTTCCCATTTCCAGGTTGGTGATACGTCTTCGACGGA]




>consensus_8181#2
GCCGAACACCACTCCGCTGAAGACGTATCACCAACCCGGAAATCACAACAGTTTACAATC
ACCTCACCCCACTTCCCATTTCCAGGTTGGTGATACGTCTTCGACGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8181#0      CCAGAGGCTGTGGAGTGAAAAGTATTTAACATGGATTTTACACATCATTGAGACGTCATG 60
consensus_8181#1      -----CGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATG 55
consensus_8181#2      ------------------------------------------------------------
                                                                                  

consensus_8181#0      TTAGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAA 120
consensus_8181#1      TTAGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCAGATAACCAAA 115
consensus_8181#2      ---------GCCGAACACCACTCCGCTGAAGACGTATCACCAACCCGG-AAATCACAACA 50
                               * *  *   ** **** ****     *  *** * * *  * ** ** * *

consensus_8181#0      GCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAGACTGCTTCAT 180
consensus_8181#1      GCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAAACTGCTTCAT 175
consensus_8181#2      GTTTACAATCACCTCACCCCACTTCCCATT------TCCAGGTTGGTGATACGTCTTCGA 104
                      * *  ****      * **    * *** *      * **  **    * **  ****  

consensus_8181#0      TCCAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGT 240
consensus_8181#1      TCCAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGT 235
consensus_8181#2      CGGA-------------------------------------------------------- 108
                         *                                                        

consensus_8181#0      CAACGGTTAGTTGACCAGATCTCCATTTATTTATCACCTTCAAACAACAGCAATAAATAA 300
consensus_8181#1      CAACGGTTAGTTGACCAGATCTCCATTTATTTATCACCTTCAAACAACAGCAATAAATAA 295
consensus_8181#2      ------------------------------------------------------------
                                                                                  

consensus_8181#0      GTACTGTGTGCAAAATATTTCACCATTTCTAATAATAATTGTGACACTAACACACTCGCA 360
consensus_8181#1      GTACTGTGTGCAAAATATTTCACCATTTCTAATAATAATTGTGACACTAACACACTCGCA 355
consensus_8181#2      ------------------------------------------------------------
                                                                                  

consensus_8181#0      AAACACAAACTATCTTCTGTCTTCACTACTCTCCTCTTACTGGAACAATAAAATTAGATC 420
consensus_8181#1      AAACACAAACTATCTTCTGTCTTCACTACTCTCCTCTTACTGGAACAATAAAATTAGATC 415
consensus_8181#2      ------------------------------------------------------------
                                                                                  

consensus_8181#0      AGATCAGTCTTCATTTCCGATTATTACAGTTACTATTATTGTGATTTGGGCATTGCCCCA 480
consensus_8181#1      AGATCGGTCTTCATTTCCGATTATTACAGTTACTATTATTGTGATTTTTGCATTGACCCA 475
consensus_8181#2      ------------------------------------------------------------
                                                                                  

consensus_8181#0      CACAGTTG-CAAGGGGGAAGAGCCTCTAGGGTGTAGAACACATCCTCTCATCTTGCCAAT 539
consensus_8181#1      CACAGTTGTCAAGGTGGAATAGACT-TGAGGAGAGGAACA-------------------- 514
consensus_8181#2      ------------------------------------------------------------
                                                                                  

consensus_8181#0      AAAACAACCACTATAAACCAAACGTAATAGAAGATGTTCACGTTGGACAATAGAGACTTG 599
consensus_8181#1      ------------------------------------------------------------
consensus_8181#2      ------------------------------------------------------------
                                                                                  

consensus_8181#0      AGTCATTCAACAATTCGGCAATCCGCTTACAGTAAGTGCTGATGAGTGAGATAGTAGAAT 659
consensus_8181#1      ------------------------------------------------------------
consensus_8181#2      ------------------------------------------------------------
                                                                                  

consensus_8181#0      TAACAGAAGTAATAGTAGCAGATGACGACCACCCAACCCGTCCATTATTATCATCTATAG 719
consensus_8181#1      ------------------------------------------------------------
consensus_8181#2      ------------------------------------------------------------
                                                                                  

consensus_8181#0      GTAAATAGTGAGTAACACAGATAGACTGAGGAGGAGGAAGAAGAAGAAGAAGAAGAGGAA 779
consensus_8181#1      ------------------------------------------------------------
consensus_8181#2      ------------------------------------------------------------
                                                                                  

consensus_8181#0      GTAAAACATACAAAATTATCAACTATTAAGCAAAGGTGACAAAACACATTAAAACACTAC 839
consensus_8181#1      ------------------------------------------------------------
consensus_8181#2      ------------------------------------------------------------
                                                                                  

consensus_8181#0      CACCGAAGACGTATCACCAACCCGGAAATCACAACAGTTTACAATCACCTCACCCCACTT 899
consensus_8181#1      ------------------------------------------------------------
consensus_8181#2      ------------------------------------------------------------
                                                                                  

consensus_8181#0      CCCATTTCCAGCTTGTTGTTATTGTTATTACCACTACCAACAACAACAAGCTGGAAATGG 959
consensus_8181#1      ------------------------------------------------------------
consensus_8181#2      ------------------------------------------------------------
                                                                                  

consensus_8181#0      GAA 962
consensus_8181#1      ---
consensus_8181#2      ---