cluster # 8197

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Schistosoma mansoni
cluster # 8197 cluster # 8197 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8197#0 length = 790 sequences # 2

consensus_8197#1 length = 479 sequences # 1
consensus_8197#2 length = 459 sequences # 3

consensusID : consensus_8197#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 790
fasta sequence

                              [GGCTTTATATAGTCAGTTAGACGGCAGTAAAGTCGGCTTGGAAAAACTGGATACTGCCCTCGCTGAGTCACAAACATGTAGAAACAGACTCATCCAACTGGGCTCTTCATTGTCTGGTTTGTCCGGCTTATCTCAGCAGTTGCATGAGTTAAAAAATCTTTCAACTAAATACAGTCAACTTGGTGCTGCTATGGAAAATATGAGTTATCTTGTGAAGGCACCTGAAACATTTGAACAGGCTCGAACTTATCTGGAATCAGAAAATCTCTTAGAAGGTCATAAACTAATGCAGGATTTGGAAGGGATTCGAGATGAACCGATGTTTGAAGTGTATCGACANAAGTCTATGGAAGATTTAGATACATTGCGTGCCTTTTTCCGTGAGCTTGAAAATTTAAATGATATGTTTAGACATAAAATAATTGTTCTTGGATCACGTTTAACTAGTGCAGTAATTACTCACAATCGCTTTGTTGTTAATTGTGTACGTGTTATTGATCGTGAAGAAAGAACTGATGCTAATTGGCGGAAACGATCAGAGAAACATGGTTTTATGCCAGATGGACGACCGAAACAATGGAAAAAACTGTTATTCGACAGTATATTTAATGCTATAAAAAATAAGGTGTTTGGAAGCGCACTAGACAATGAAAATGATAAAAATAAATTAGTTCGACACAATGAAGCCATTAGACAGCATACGCTAGCAGATTTGAAAATAGCAAAAAATATATGTCCAACATATTTTCCAGCAGATTATGCTATATTTGACCGATTTGCTGAAATGTAT]

[+] EMBL CD181246             [GGCTTTATATAGTCAGTTAGACGGCAGTAAAGTCGGCTTGGAAAAACTGGATACTGCCCTCGCTGAGTCACAAACATGTAGAAACAGACTCATCCAACTGGGCTCTTCATTGTCTGGTTTGTCCGGCTTATCTCAGCAGTTGCATGAGTTAAAAAATCTTTCAACTAAATACAGTCAACTTGGTGCTGCTATGGAAAATATGAGTTATCTTGTGAAGGCACCTGAAACATTTGAACAGGCTCGAACTTATCTGGAATCAGAAAATCTCTTAGAAGGTCATAAACTAATGCAGGATTTGGAAGGGATTCGAGATGAACCGATGTTTGAAGTGTATCGACANAAGTCTATGGAAGATTTAGATACATTGCGTG                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD064949             [                                                                                                                                                                             GTCAACTTGGTGCTGCTATGGAAAATATGAGTTATCTTGTGAAGGCACCTGAAACATTTGAACAGGCTCGAACTTATCTGGAATCAGAAAATCTCTTAGAAGGTCATAAACTAATGCAGGATTTGGAAGGGATTCGAGATGAACTGATGTTTGGAGTGTATCGACAAAAGTCTATGGAAGATTTAGATACATTGCGTGCCTTTTTCCGTGAGCTTGAAAATTTAAATGATATGTTTAGACATAAAATAATTGTTCTTGGATCACGTTTAACTAGTGCAGTAATTACTCACAATCGCTTTGTTGTTAATTGTGTACGTGTTATTGATCGTGAAGAAAGAACTGATGCTAATTGGCGGAAACGATCAGAGAAACATGGTTTTATGCCAGATGGACGACCGAAACAATGGAAAAAACTGTTATTCGACAGTATATTTAATGCTATAAAAAATAAGGTGTTTGGAAGCGCACTAGACAATGAAAATGATAAAAATAAATTAGTTCGACACAATGAAGCCATTAGACAGCATACGCTAGCAGATTTGAAAATAGCAAAAAATATATGTCCAACATATTTTCCAGCAGATTATGCTATATTTGACCGATTTGCTGAAATGTAT]




>consensus_8197#0
GGCTTTATATAGTCAGTTAGACGGCAGTAAAGTCGGCTTGGAAAAACTGGATACTGCCCT
CGCTGAGTCACAAACATGTAGAAACAGACTCATCCAACTGGGCTCTTCATTGTCTGGTTT
GTCCGGCTTATCTCAGCAGTTGCATGAGTTAAAAAATCTTTCAACTAAATACAGTCAACT
TGGTGCTGCTATGGAAAATATGAGTTATCTTGTGAAGGCACCTGAAACATTTGAACAGGC
TCGAACTTATCTGGAATCAGAAAATCTCTTAGAAGGTCATAAACTAATGCAGGATTTGGA
AGGGATTCGAGATGAACCGATGTTTGAAGTGTATCGACANAAGTCTATGGAAGATTTAGA
TACATTGCGTGCCTTTTTCCGTGAGCTTGAAAATTTAAATGATATGTTTAGACATAAAAT
AATTGTTCTTGGATCACGTTTAACTAGTGCAGTAATTACTCACAATCGCTTTGTTGTTAA
TTGTGTACGTGTTATTGATCGTGAAGAAAGAACTGATGCTAATTGGCGGAAACGATCAGA
GAAACATGGTTTTATGCCAGATGGACGACCGAAACAATGGAAAAAACTGTTATTCGACAG
TATATTTAATGCTATAAAAAATAAGGTGTTTGGAAGCGCACTAGACAATGAAAATGATAA
AAATAAATTAGTTCGACACAATGAAGCCATTAGACAGCATACGCTAGCAGATTTGAAAAT
AGCAAAAAATATATGTCCAACATATTTTCCAGCAGATTATGCTATATTTGACCGATTTGC
TGAAATGTAT

consensusID : consensus_8197#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 479
fasta sequence

                              [GAGTATCCCATGCAATCTCGGGAATCAGAAAATCTCTTAGAAGGTCATAAACTAATGCAGGATTTGGAAGGGATTCGAGATGAACTGATGTTTGAAGTGTATCGACAAAAGTCTATGGAAGATTTAGATACATTGCGTGCCTTTTTCCGTGAGCTTGAAAATTTAAATGATATGTTTAGACATAAAATAATTGTTCTTGGATCACGTTTAACTAGTGCAGTAATTACTCACAATCGCTTTGTTGTTAATTGTGTACGTGTTATTGATCGTGAAGAAAGAACTGATGCTAATTGGCGGAAACGATCAGAGAAACATGGTTTTATGCCAGATGGACGACCGAAACAATGGAAAAAACTGTTATTCGACAGTATATTTAATGCTATAAAAAATAAGGTGTTTGGAAGCGCACTAGACAATGAAAATGATAAAAATAAATTAGTTCGACACAATGAAGCCATTAGACAGCATACGCTAGCAGA]

[+] EMBL CD061831             [GAGTATCCCATGCAATCTCGGGAATCAGAAAATCTCTTAGAAGGTCATAAACTAATGCAGGATTTGGAAGGGATTCGAGATGAACTGATGTTTGAAGTGTATCGACAAAAGTCTATGGAAGATTTAGATACATTGCGTGCCTTTTTCCGTGAGCTTGAAAATTTAAATGATATGTTTAGACATAAAATAATTGTTCTTGGATCACGTTTAACTAGTGCAGTAATTACTCACAATCGCTTTGTTGTTAATTGTGTACGTGTTATTGATCGTGAAGAAAGAACTGATGCTAATTGGCGGAAACGATCAGAGAAACATGGTTTTATGCCAGATGGACGACCGAAACAATGGAAAAAACTGTTATTCGACAGTATATTTAATGCTATAAAAAATAAGGTGTTTGGAAGCGCACTAGACAATGAAAATGATAAAAATAAATTAGTTCGACACAATGAAGCCATTAGACAGCATACGCTAGCAGA]




>consensus_8197#1
GAGTATCCCATGCAATCTCGGGAATCAGAAAATCTCTTAGAAGGTCATAAACTAATGCAG
GATTTGGAAGGGATTCGAGATGAACTGATGTTTGAAGTGTATCGACAAAAGTCTATGGAA
GATTTAGATACATTGCGTGCCTTTTTCCGTGAGCTTGAAAATTTAAATGATATGTTTAGA
CATAAAATAATTGTTCTTGGATCACGTTTAACTAGTGCAGTAATTACTCACAATCGCTTT
GTTGTTAATTGTGTACGTGTTATTGATCGTGAAGAAAGAACTGATGCTAATTGGCGGAAA
CGATCAGAGAAACATGGTTTTATGCCAGATGGACGACCGAAACAATGGAAAAAACTGTTA
TTCGACAGTATATTTAATGCTATAAAAAATAAGGTGTTTGGAAGCGCACTAGACAATGAA
AATGATAAAAATAAATTAGTTCGACACAATGAAGCCATTAGACAGCATACGCTAGCAGA

consensusID : consensus_8197#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 459
fasta sequence

                              [TGGAATCAGAAAATCTCTTAGAAGGTCATGAACTAATGCAGGATTTGGAAGGGATTCGAGATGAACTGATGTTTGAAGTGTATCGACAAAAGTCTATGGAAGATTTAGATACATTGCGTGCCTTTTTCCGTGAGCTTGAAAATTTAAATGATATGTTTAGACATAAAATAATTGTTCTTGGATCACGTTTAACTAGTGCAGTAATTACTCACAATCGCTTTGTTGTTAATTGTGTACGTGTTATTGATCGTGAAGAAAGTATTAACTTACATCCACATATTATACTCAAATTTCATCGAAACGTTTCTGATATAAAGTATCGGTATTCATCTTGTTTTACATAATTAGAACTGATGCTAATTGGCGGAAACGATCAGAGAAACATTGTTTTATGCCAGATGGACGACCGANACAATGGAAAAACTGTTATCGACAGTATATTTAATGCTATAAAAAATA]

[+] EMBL CD148885             [TGGAATCAGAAAATCTCTTAGAAGGTCATGAACTAATGCAGGATTTGGAAGGGATTCGAGATGAACTGATGTTTGAAGTGTATCGACAAAAGTCTATGGAAGATTTAGATACATTGCGTGCCTTTTTCCGTGAGCTTGAAAATTTAAATGATATGTTTAGACATAAAATAATTGTTCTTGGATCACGTTTAACTAGTGCAGTAATTACTCACAATCGCTTTGTTGTTAATTGTGTACGTGTTATTGATCGTGAAGAAAGTATTAACTTACATCCACATATTATACTCAAATTTCATCGAAACGTTTCTGATATAAAGTATCGGTATTCATCTTGTTTTACATAATTAGAACTGATGCTAATTGGCGGAAACGATCAGAGAAACATTGTTTTATGCCAGATGGACGACCGANACAATGGAAAAACTGTTATCGACAGTATATTTAATGCTATAAAAAATA]
[+] EMBL CD148902             [TGGAATCAGAAAATCTCTTAGAAGGTCATGAACTAATGCAGGATTTGGAAGGGATTCGAGATGAACTGATGTTTGAAGTGTATCGACAAAAGTCTATGGAAGATTTAGATACATTGCGTGCCTTTTTCCGTGAGCTTGAAAATTTAAATGATATGTTTAGACATAAAATAATTGTTCTTGGATCACGTTTAACTAGTGCAGTAATTACTCACAATCGCTTTGTTGTTAATTGTGTACGTGTTATTGATCGTGAAGAAAGTATTAACTTACATCCACATATTATACTCAAATTTCATCGAAACGTTTCTGATATAAAGTATCGGTATTCATCTCG TTTACATAATTAGAA                                                                                                             ]
[+] EMBL CD148934             [TGGAATCAGAAAATCTCTTATAAGGTCATGAACTAATGCACGATTTGGAAGGGATTCTAGATGAACTGATGTTTGAAGTGTATCTACAAAAG                                                                                                                                                                                                                                                                                                                                                                               ]




>consensus_8197#2
TGGAATCAGAAAATCTCTTAGAAGGTCATGAACTAATGCAGGATTTGGAAGGGATTCGAG
ATGAACTGATGTTTGAAGTGTATCGACAAAAGTCTATGGAAGATTTAGATACATTGCGTG
CCTTTTTCCGTGAGCTTGAAAATTTAAATGATATGTTTAGACATAAAATAATTGTTCTTG
GATCACGTTTAACTAGTGCAGTAATTACTCACAATCGCTTTGTTGTTAATTGTGTACGTG
TTATTGATCGTGAAGAAAGTATTAACTTACATCCACATATTATACTCAAATTTCATCGAA
ACGTTTCTGATATAAAGTATCGGTATTCATCTTGTTTTACATAATTAGAACTGATGCTAA
TTGGCGGAAACGATCAGAGAAACATTGTTTTATGCCAGATGGACGACCGANACAATGGAA
AAACTGTTATCGACAGTATATTTAATGCTATAAAAAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8197#0      GGCTTTATATAGTCAGTTAGACGGCAGTAAAGTCGGCTTGGAAAAACTGGATACTGCCCT 60
consensus_8197#1      ------------------------------------------------------------
consensus_8197#2      ------------------------------------------------------------
                                                                                  

consensus_8197#0      CGCTGAGTCACAAACATGTAGAAACAGACTCATCCAACTGGGCTCTTCATTGTCTGGTTT 120
consensus_8197#1      ------------------------------------------------------------
consensus_8197#2      ------------------------------------------------------------
                                                                                  

consensus_8197#0      GTCCGGCTTATCTCAGCAGTTGCATGAGTTAAAAAATCTTTCAACTAAATACAGTCAACT 180
consensus_8197#1      ------------------------------------------------------------
consensus_8197#2      ------------------------------------------------------------
                                                                                  

consensus_8197#0      TGGTGCTGCTATGGAAAATATGAGTTATCTTGTGAAGGCACCTGAAACATTTGAACAGGC 240
consensus_8197#1      ----------------------------------------------------GAGTATCC 8
consensus_8197#2      ------------------------------------------------------------
                                                                                  

consensus_8197#0      TCGAACTTATCTGGAATCAGAAAATCTCTTAGAAGGTCATAAACTAATGCAGGATTTGGA 300
consensus_8197#1      CATGCAATCTCGGGAATCAGAAAATCTCTTAGAAGGTCATAAACTAATGCAGGATTTGGA 68
consensus_8197#2      -----------TGGAATCAGAAAATCTCTTAGAAGGTCATGAACTAATGCAGGATTTGGA 49
                                  **************************** *******************

consensus_8197#0      AGGGATTCGAGATGAACCGATGTTTGAAGTGTATCGACANAAGTCTATGGAAGATTTAGA 360
consensus_8197#1      AGGGATTCGAGATGAACTGATGTTTGAAGTGTATCGACAAAAGTCTATGGAAGATTTAGA 128
consensus_8197#2      AGGGATTCGAGATGAACTGATGTTTGAAGTGTATCGACAAAAGTCTATGGAAGATTTAGA 109
                      ***************** ********************* ********************

consensus_8197#0      TACATTGCGTGCCTTTTTCCGTGAGCTTGAAAATTTAAATGATATGTTTAGACATAAAAT 420
consensus_8197#1      TACATTGCGTGCCTTTTTCCGTGAGCTTGAAAATTTAAATGATATGTTTAGACATAAAAT 188
consensus_8197#2      TACATTGCGTGCCTTTTTCCGTGAGCTTGAAAATTTAAATGATATGTTTAGACATAAAAT 169
                      ************************************************************

consensus_8197#0      AATTGTTCTTGGATCACGTTTAACTAGTGCAGTAATTACTCACAATCGCTTTGTTGTTAA 480
consensus_8197#1      AATTGTTCTTGGATCACGTTTAACTAGTGCAGTAATTACTCACAATCGCTTTGTTGTTAA 248
consensus_8197#2      AATTGTTCTTGGATCACGTTTAACTAGTGCAGTAATTACTCACAATCGCTTTGTTGTTAA 229
                      ************************************************************

consensus_8197#0      TTGTGTACGTGTTATTGATCGTGAAGAAAGAACTGATGCTAATTGGCGGAAACGATCAGA 540
consensus_8197#1      TTGTGTACGTGTTATTGATCGTGAAGAAAGAACTGATGCTAATTGGCGGAAACGATCAGA 308
consensus_8197#2      TTGTGTACGTGTTATTGATCGTGAAGAAAGTATTAACTTACATCCACATATTATACTCAA 289
                      ****************************** * * *     **   *  *    *    *

consensus_8197#0      GAAACATGGTTTTATGCCAGATGGACGACCGAAACAATGGAAAAAACTGTTATTCGACAG 600
consensus_8197#1      GAAACATGGTTTTATGCCAGATGGACGACCGAAACAATGGAAAAAACTGTTATTCGACAG 368
consensus_8197#2      ATTTCATCGAAACGTTTCTGATATAAAGTATCGGTATTC----ATCTTGTTTTACATAAT 345
                          *** *     *  * ***  *          * *     *   **** * *   * 

consensus_8197#0      TATATTTAATGCTATAAAAAATAAGGTGTTTGGAAGCGCACTAGACAATGAAAATGATAA 660
consensus_8197#1      TATATTTAATGCTATAAAAAATAAGGTGTTTGGAAGCGCACTAGACAATGAAAATGATAA 428
consensus_8197#2      TAGAACTGATGCTA-ATTGGCGGAAACGATCAGAGAAACATTGTTTTATGCCAGATGGAC 404
                      ** *  * ****** *       *   * *  **    ** *     ***  *     * 

consensus_8197#0      AAATAAATTAGTTCGACACAATGAAGCCATTAG-ACAGCATACGCTAGCAGATTTGAAAA 719
consensus_8197#1      AAATAAATTAGTTCGACACAATGAAGCCATTAG-ACAGCATACGCTAGCAGA-------- 479
consensus_8197#2      GACCGANACAATG-GAAAAACTGTTATCGACAGTATATTTAATGCTATAAAAAATA---- 459
                       *   *   * *  ** * * **    *   ** * *    * ****  * *        

consensus_8197#0      TAGCAAAAAATATATGTCCAACATATTTTCCAGCAGATTATGCTATATTTGACCGATTTG 779
consensus_8197#1      ------------------------------------------------------------
consensus_8197#2      ------------------------------------------------------------
                                                                                  

consensus_8197#0      CTGAAATGTAT 790
consensus_8197#1      -----------
consensus_8197#2      -----------