cluster # 8208

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Schistosoma mansoni
cluster # 8208 cluster # 8208 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8208#0 length = 1037 sequences # 4

consensus_8208#1 length = 394 sequences # 2

consensusID : consensus_8208#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1037
fasta sequence

                              [AATGGGGCGATTGGATAAACATTTATTTGATAAGAAGATGCGGAAATTAAAACTATTCTATCTATGTGTGTGAATATATGATGCCGGTGGGGAATTCAAAGAAGATACAGAAAGACCAATGCCAAATGAATCTGTGGACGGATAAGAGACTACGTGAGATAAATCTATGCTTCTGTGTATATTTCGTTATATATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGATGCACAAGACCTCTGTTTGCGAGCGACGGTAACTTAGGAGCAGAAAAGGATCATCAATTACAACATCAACAGGTCTACTAGTAACAAACTAAATTATAC-AAATCTG-TCAAGAGTTA-GAAACAA-GCACA-TTAAGAAA-TATTTTCAGAGAACGAAGTGACGAAACAGATTAGTGATGAACAAACAACTGAGCAATAACAACTTCAGACATCTTTATGCAAACATAAACGACAGGATCAGTATATTTTAATTGTTTCCAATTCTTCAAAACCTTCCTTCTCTTAATACTACACATATAAAGGAATGGGAGAAAAGTGGAAAACTCTCCCATGGATGGAAGAAAACAATACATACACAAATGTACATACTGTGTATGTGGAGAAAGGAGCAATTGAATAGGGGAAAATAATCCTTTTTCNCAAAAGTCAAACCAAAGACTAGTGTCACAAACGAAATTGAAAGACAAATTTGGAAGGAGAATAAATTGACAGCAAACAAGTGTGGATGTAATTGTTTTTCTGCCAGTGTGCATATATAGTGTGATACACAACACACCTTACCTAATAATGTGAAGAGAAATACATTATAATTATTGTATACTTTGCTTTTTTTATTAAGCCTGAGCAATACCATCTGACGCAGCAGAGGAGGTTGGCCTAGCACCACCAGCACTATGACATCTAGACAGAGGAGGATTGTTTGTAATGATTGAATCTAAACGATGATTAACAGTTGCTGTTGTTGTGGCATTATTGGTGGTAGTTTCTGAATTAAAAGAACCATTGAAGTGATGCGAG]

[-] EMBL AI974229             [AATGGGGCGATTGGATAAACATTTATTTGATAAGAAGATGCGGAAATTAAAACTATTCTATCTATGTGTGTGAATATATGATGCCGGTGGGGAATTCAAAGAAGATACAGAAAGACCAATGCCAAATGAATCTGTGGACGGATAAGAGACTACGTGAGATAAATCTATGCTTCTGTGTATATTTCGTTATATATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGATGCACAAGACCTCTGTTTGCGAGCGACGGTAACTTAGGAGCAGAAAAGGATCATCAATTACAACATCAACAGGTCTACTAGTAACAAACTAAATTATACAAAATCTGTTCAAGAGTTATGAAACAATGCACATTTAAGAAATTATTTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD094015             [                                                                                                                                                                                                                                                                                                AAGGATCATCAATTACAACATCAACAGGTCTACTAGTAACAAACTAAATTATAC GAATCTG TCAAGAGTTA GAAACAA GCACA TTAAGAAA TATTTTCAGAGAACGAAGTGACGAAACAGATTAGTGATGAACAAACAACTGAGCAATAACAACTTCAGACATCTTTATGCAAACATAAACGACAGGATCAGTATATTTTAATTGTTTCCAATTCTTCAAAACCTTCCTTCTCTTAATACTACACATATAAAGGAATGGGAGAAAAGTGGAAAACTCTCCCATGGATGGAAGAAAACAATACATACACAAATGTACATACTGTGTATGTGGAGAAAGGAGCAATTGAATAGGGGAAAATAATCCTTTTTC                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD139675             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ancTCCTTCTCTTAATNCTNCACATATNAAGG AT GGAGAAAAGTGGAAAACTCTCNCATGGATGGAAGAAAACAATACATACACAAATGTACATACTGTGTATGTGGAGAAAGGAGCAATTGAATAGGGGAAAATAATCCTTTTTCNCAAAAGTCAAACCAAAGACTAGTGTCACAAACGAAATTGAAAGACAAATTTGGAAGGAGAATAAATTGACAGCAAACAAGTGTGGATGTAATTGTTTTTCTGCCAGTGTGCATATATAGTGTGATACACAACACACCTTACCTAATAATGTGAAGAGAAATACATTATAATTATTGTATACTTTGCTTTTTTTATTAAGCCTGAGCAATACCATCTGACGCAGCAGAGGAGGTTGGCCTAGCACCACCAGCACTATGACATCTAGACAGAGGAGGATTGTTTGTAATGATTGAATCTA                                                                                ]
[+] EMBL CD178437             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ATACACAAATGTACATACTGTGTATGTGGAGAAAGGAGCAATTGAATAGGGGAAAATAATCCTTTTTCCCAAAAGTCAAACCAAAGACTAGTGTCACAAACGAAATTGAAAGACAAATTTGGAAGGAGAATAAATTGACAGCAAACAAGTGTGGATGTAATTGTTTTTCTGCCAGTGTGCATATATAGTGTGATACACAACACACCTTACCTAATAATGTGAAGAGAAATACATTATAATTATTGTATACTTTGCTTTTTTTATTAAGCCTGAGCAATACCATCTGACGCAGCAGAGGAGGTTGGCCTAGCACCACCAGCACTATGACATCTAGACAGAGGAGGATTGTTTGTAATGATTGAATCTAAACGATGATTAACAGTTGCTGTTGTTGTGGCATTATTGGTGGTAGTTTCTGAATTAAAAGAACCATTGAAGTGATGCGAG]




>consensus_8208#0
AATGGGGCGATTGGATAAACATTTATTTGATAAGAAGATGCGGAAATTAAAACTATTCTA
TCTATGTGTGTGAATATATGATGCCGGTGGGGAATTCAAAGAAGATACAGAAAGACCAAT
GCCAAATGAATCTGTGGACGGATAAGAGACTACGTGAGATAAATCTATGCTTCTGTGTAT
ATTTCGTTATATATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAG
AGATGCACAAGACCTCTGTTTGCGAGCGACGGTAACTTAGGAGCAGAAAAGGATCATCAA
TTACAACATCAACAGGTCTACTAGTAACAAACTAAATTATACAAATCTGTCAAGAGTTAG
AAACAAGCACATTAAGAAATATTTTCAGAGAACGAAGTGACGAAACAGATTAGTGATGAA
CAAACAACTGAGCAATAACAACTTCAGACATCTTTATGCAAACATAAACGACAGGATCAG
TATATTTTAATTGTTTCCAATTCTTCAAAACCTTCCTTCTCTTAATACTACACATATAAA
GGAATGGGAGAAAAGTGGAAAACTCTCCCATGGATGGAAGAAAACAATACATACACAAAT
GTACATACTGTGTATGTGGAGAAAGGAGCAATTGAATAGGGGAAAATAATCCTTTTTCNC
AAAAGTCAAACCAAAGACTAGTGTCACAAACGAAATTGAAAGACAAATTTGGAAGGAGAA
TAAATTGACAGCAAACAAGTGTGGATGTAATTGTTTTTCTGCCAGTGTGCATATATAGTG
TGATACACAACACACCTTACCTAATAATGTGAAGAGAAATACATTATAATTATTGTATAC
TTTGCTTTTTTTATTAAGCCTGAGCAATACCATCTGACGCAGCAGAGGAGGTTGGCCTAG
CACCACCAGCACTATGACATCTAGACAGAGGAGGATTGTTTGTAATGATTGAATCTAAAC
GATGATTAACAGTTGCTGTTGTTGTGGCATTATTGGTGGTAGTTTCTGAATTAAAAGAAC
CATTGAAGTGATGCGAG

consensusID : consensus_8208#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 394
fasta sequence

                              [ATGTGCAATGGTAGGTAGGTGGTAGTTTTTGAATTAAAAGAACCATTGAAGTGATGCGAGACACCGCTTGACGACATTCTTAATATAGCACCATCAGGGAAAGATGAAACGGGCATACAACCACTATCAGAACCAGTGGAAAGCATAATTGAATTGTTCATATATTTAAGAAAATCTGGATTAGTGAAATTTTTCACCAGTCCACCACCATTATTATCTTCCTTCACCATTGTATGTCGCGCAACACATGGGGTGTATTCTTCAATCGATTGTTGTTTAGACGATTTCACTGAAGGACGAGATAGTTGAAAGAAACAATGACGGCATACACGAACCGGTCCACTTGGTTGACTTGTTGTAACAATACGACGATCAGAACAATTTGCACAGAATA]

[+] EMBL CD128015             [ATGTGCAATGGTAGGTAGGTGGTAGTTTTTGAATTAAAAGAACCATTGAAGTGATGCGAGACACCGCTTGACGACATTCTTAATATAGCACCATCAGGGAAAGATGAAACGGGCATACAACCACTATCAGAACCAGTGGAAAGCATAATTGAATTGTTCATATATTTAAGAAAATCTGGATTAGTGAAATTTTTCACCAGTCCACCACCATTATTATCTTCCTTCACCATTGTATGTCGCGCAACACATGGGGTGTATTCTTCAATCGATTGTTGTTTAGACGATTTCACTGAAGGACGAGATAGTTGAAAGAAACAATGACGGCATACACGAACCGGTCCACTTGGTTGACTTGTTGTAACAATACGACGATCAGAACAATTTGCACAGAATA]
[-] EMBL CD195842             [                                                            ACACCGCTTGACGACATTCTTAATATAGCACCATCAGGGAAAGATGAAACGGGCATACANCCACTATCAGAACCAGTGGAAAGCATAATTGAATTGTTCATATAATTAAGAAAATCTGGATTAGTGAAATTTTTCACCAGTCCACCACCATTATTATCTTCCTTCACCATTGTATGTCGCGCAACACATGGGGTGTATTCTTCAATCGATTGTTGTTTAGACGATTTCACTGAAGGACGAGATAGTTGAAAGAAACAATGACGGCATACACGAACCGGTCCACTTGGTTGACTTGT                                      ]




>consensus_8208#1
ATGTGCAATGGTAGGTAGGTGGTAGTTTTTGAATTAAAAGAACCATTGAAGTGATGCGAG
ACACCGCTTGACGACATTCTTAATATAGCACCATCAGGGAAAGATGAAACGGGCATACAA
CCACTATCAGAACCAGTGGAAAGCATAATTGAATTGTTCATATATTTAAGAAAATCTGGA
TTAGTGAAATTTTTCACCAGTCCACCACCATTATTATCTTCCTTCACCATTGTATGTCGC
GCAACACATGGGGTGTATTCTTCAATCGATTGTTGTTTAGACGATTTCACTGAAGGACGA
GATAGTTGAAAGAAACAATGACGGCATACACGAACCGGTCCACTTGGTTGACTTGTTGTA
ACAATACGACGATCAGAACAATTTGCACAGAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8208#0      AATGGGGCGATTGGATAAACATTTATTTGATAAGAAGATGCGGAAATTAAAACTATTCTA 60
consensus_8208#1      ------------------------------------------------------------
                                                                                  

consensus_8208#0      TCTATGTGTGTGAATATATGATGCCGGTGGGGAATTCAAAGAAGATACAGAAAGACCAAT 120
consensus_8208#1      ------------------------------------------------------------
                                                                                  

consensus_8208#0      GCCAAATGAATCTGTGGACGGATAAGAGACTACGTGAGATAAATCTATGCTTCTGTGTAT 180
consensus_8208#1      ------------------------------------------------------------
                                                                                  

consensus_8208#0      ATTTCGTTATATATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAG 240
consensus_8208#1      ------------------------------------------------------------
                                                                                  

consensus_8208#0      AGATGCACAAGACCTCTGTTTGCGAGCGACGGTAACTTAGGAGCAGAAAAGGATCATCAA 300
consensus_8208#1      ------------------------------------------------------------
                                                                                  

consensus_8208#0      TTACAACATCAACAGGTCTACTAGTAACAAACT--AAATTATACAAATCTGTCAAGAGTT 358
consensus_8208#1      -----ATGTGCAATGGTAGGTAGGTGGTAGTTTTTGAATTAAAAGAACCATTGAAGTGAT 55
                           *  *  *  ***      **   *   *   ***** *  ** *  * *** * *

consensus_8208#0      AGAAACAAGCACATTAAGAAATATTTTCAGAGAACGAAGTGACGAAACAGATTAGTGATG 418
consensus_8208#1      GCGAGACACCGCTTGACGACAT-TCTTAATATAGCACCATCAGGGAA-AGATGA--AACG 111
                         *   * * * * * ** ** * ** * * * *    * * * ** **** *   * *

consensus_8208#0      AACAAACAACTGAGCAATAACAACTTCAGACATCTTTATGCAAACATAAACGACAGGATC 478
consensus_8208#1      GGCATACAAC----CACTATCAGAACCAGTG--------GAAAGCATAATTGAATTGTTC 159
                        ** *****    ** ** **    ***          * ** *****  **   * **

consensus_8208#0      AGTATATTTTAATTGTTTCCAATTCTTCAAAACCTTCCTTCTCTTAATACTACACATATA 538
consensus_8208#1      A-TATATTTAAGAAAATCTGGATTAGTGAAATTTTTCACCAGTCCACCACCATTATTATC 218
                      * ******* *     *    ***  * ***   ***        *  ** *    *** 

consensus_8208#0      AAGGAATGGGAGAAAAGTGGAAAACTCTCCCATGGATGGAAGAAAACAATACATACACAA 598
consensus_8208#1      ------TTCCTTCACCATTGTATGTCGCGCAACACATGGGGTGTATTCTTCAATCGATTG 272
                            *      *   * * *       * *   ****     *    *  **  *   

consensus_8208#0      ATGTACATACTGTGTATGTGGAGAAAGGAGCAATTGAATAGGGGAAAATAATCCTTTTTC 658
consensus_8208#1      TTGTTTAGACGATTTCACTGAAGGACGAGATAGTTGAA-AGAAACAATGACGGCATACAC 331
                       ***  * **  * *   ** ** * *    * ***** **    **  *   * *   *

consensus_8208#0      NCAAAAGTCAAACCAAA-GACTAGTGTCACAAACGAAATTGAAAGACAAATTTGGAAGGA 717
consensus_8208#1      GAACCGGTCCACTTGGTTGACTTGTTGTAACAATACGACGATCAGAACAATTTGCACAGA 391
                        *   *** *       **** **   *  **    *     ***  ****** *  **

consensus_8208#0      GAATAAATTGACAGCAAACAAGTGTGGATGTAATTGTTTTTCTGCCAGTGTGCATATATA 777
consensus_8208#1      ATA--------------------------------------------------------- 394
                        *                                                         

consensus_8208#0      GTGTGATACACAACACACCTTACCTAATAATGTGAAGAGAAATACATTATAATTATTGTA 837
consensus_8208#1      ------------------------------------------------------------
                                                                                  

consensus_8208#0      TACTTTGCTTTTTTTATTAAGCCTGAGCAATACCATCTGACGCAGCAGAGGAGGTTGGCC 897
consensus_8208#1      ------------------------------------------------------------
                                                                                  

consensus_8208#0      TAGCACCACCAGCACTATGACATCTAGACAGAGGAGGATTGTTTGTAATGATTGAATCTA 957
consensus_8208#1      ------------------------------------------------------------
                                                                                  

consensus_8208#0      AACGATGATTAACAGTTGCTGTTGTTGTGGCATTATTGGTGGTAGTTTCTGAATTAAAAG 1017
consensus_8208#1      ------------------------------------------------------------
                                                                                  

consensus_8208#0      AACCATTGAAGTGATGCGAG 1037
consensus_8208#1      --------------------