cluster # 8219

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Schistosoma mansoni
cluster # 8219 cluster # 8219 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8219#0 length = 530 sequences # 5

consensus_8219#1 length = 350 sequences # 1

consensusID : consensus_8219#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 530
fasta sequence

                              [GGCAGCTTCAATAACAAGTACATTAGCACGAAATATGTCGTTTGTTGACCATTCTGCAGGATTCCATAAACCTGGTCTAAA-GTAGATAAGTGCTCTACCTTCTGAATCTGGTTGAGGCAATCGACATACAACTCCACTTTGAAATACATGTTCAACTAATGATGGTCTTAAATCATGGAATATATCTGGATAGCGTAATCTTAATATATAATAGTTTGTATACAGTCTCAATGCATTATCCTGATTAAA-TTTTTTAGCACGTAGAAAACGTAGGAGGAATTCATCAGCCAAACATCCTTGTAAACTTTGTAACTGAATACGATGTCTTAACTCGGCAATGGCATTCTGTCGTTGTTGCGGCTGTTCATTTAATTCTAGAAATGCTTTTTCTAATGTTTGAGGAGATAATTCTATCATATTCAAATCTGAACCCATAGTTGATTGAGCGTGAGTCAATACATAATCATTATAGCCATCCGTTTATATAACACCCTTGCTTTGCAATTACGCACGTTTTTGAGGTCACACAA]

[+] EMBL CD119687             [GGCAGCTTCAATAACAAGTACATTAGCACGAAATATGTCGTTTGTTGACCATTCTGCAGGATTCCATAAACCTGGTCTAAA GTAGATAAGTGCTCTACCTTCTGAATCTGGTTGAGGCAATCGACATACAACTCCACTTTGAAATACATGTTCAACTAATGATGGTCTTAAATCATGGAATATATCTGGATAGCGTAATCTTAATATATAATAGTTTGTATACAGTCTCAATGCATTATCCTGATTAAA TTTTTTAGCACGTAGAAAACGTAGGAGGAATTCATCAGCCAAACATCCTTGTAAACTTTGTAACTGAATACGATGTCTTAACTCGGCAATGGCATTCTGTCGTTGTTGCGGCTGTTCATTTAATTCTAGAAATGCTTTTTCTAATGTTTGAGGAGATAATTCTATCATATTCAAATCTGAACCCATAGTTG                                                                                          ]
[+] EMBL CD119628             [                     ATTAGCACGAAATATGTCGTCTGTTGACCATTCTGCAGGATTCCATAAACCTGGTCTAAA GTAGATAAGTGCTCTACCTTCTGAATCTGGTTGAGGCAATCGACATACAACTCCACTTTGAAATACATGTTCAACTAATGATGGTCTTAAATCATGGAATATATCTGGATAGCGTAATCTTAATATATAATAGTTTGTATACAGTCTCAATGCATTATCCTGATTAAA TTTTTTAGCACGTAAAAAACGTAGGAGGAATTCATCAGCCAAACATCCTTGTAAACTTTGTAACTGAATACGATGTCTTAACTCGGCAATGGCATTCTGTCGTTGTTGCGGCTGTTCATTTAATTCTAGAAATGCTTTTTCTAATGTTTGAGGAGATAATTCTATCATATTCAAATCTGAACCCATAATTG                                                                                          ]
[+] EMBL CD119635             [                     ATTAGCACGAAATATGTCGTTTGTTGACCATTCTGCAGGATTCCATAAACCTGGTCTAAA GTAGATAAGTGCTCTACCTTCTGAATCTGGTTGAGGCAATCGACATACAACTCCACTTTGAAATACATGTTCAACTAATGATGGTCTTAAATCATGGAATATATCTGGATAGCGTAATCTTAATATATAATAGTTTGTATACAGTCTCAATGCATTATCCTGATTAAA TTTTTTAGCACGTAGAAAACGTAGGAGGAATTCATCAGCCAAACATCCTTGTAAACTTTGTAACTGAATACGATGTCTTAACTCGGCAATGGCATTCTGTCGTTGTTGCGGCTGTTCATTTAATTCTAGAAATGCTTTTTCTAATGTTTGAGGAGATAATTCTATCATATTCAAATCTGAACCCATANTTG                                                                                          ]
[-] EMBL CD078191             [                          CACGAAATATGTCGTNTGTTGACCATTCTGCAGGATTCCATAAA CTGGTCTAAANGTAGATAAGTGCTCTACCTTCTGAATCTGGTTGAGGCAATCGACATACAACTCCACTTTGAAATACATGTTCAACTAATGATGGTCTTAAATCATGGAATATATCTGGATAGCGTAATCTTAATATATAATAGTTTGTATACAGTCTCAATGCATTATCCTGATTAAA TTTTTTAGCACGTAGAAAACGTA                                                                                                                                                                                                                                                                  ]
[-] EMBL CD187681             [                                                                                                                                                                                                        CTTAATATATAATAGTTTGTATACAGTCTCAATGCATTATCGTGATTAAATTTTTTTAGCACGTAGAAAACGTAGGAGGAATTCATCAGCCAAACATCCTTGTAAACTTTGTAACTGAATACGATGTCTTAACTCGGCAATGGCATTCTGTCGTTGTTGCGCCTGTTCATTTAATTCGAAAAATGCTTTTTTTAATGTTTGAGGAGATAATTCTATCATATTCAAATCTGAACCCATAGTTGATTGAGCGTGAGTCAATACATAATCATTATAGCCATCCGTTTATATAACACCCTTGCTTTGCAATTACGCACGTTTTTGAGGTCACACAA]




>consensus_8219#0
GGCAGCTTCAATAACAAGTACATTAGCACGAAATATGTCGTTTGTTGACCATTCTGCAGG
ATTCCATAAACCTGGTCTAAAGTAGATAAGTGCTCTACCTTCTGAATCTGGTTGAGGCAA
TCGACATACAACTCCACTTTGAAATACATGTTCAACTAATGATGGTCTTAAATCATGGAA
TATATCTGGATAGCGTAATCTTAATATATAATAGTTTGTATACAGTCTCAATGCATTATC
CTGATTAAATTTTTTAGCACGTAGAAAACGTAGGAGGAATTCATCAGCCAAACATCCTTG
TAAACTTTGTAACTGAATACGATGTCTTAACTCGGCAATGGCATTCTGTCGTTGTTGCGG
CTGTTCATTTAATTCTAGAAATGCTTTTTCTAATGTTTGAGGAGATAATTCTATCATATT
CAAATCTGAACCCATAGTTGATTGAGCGTGAGTCAATACATAATCATTATAGCCATCCGT
TTATATAACACCCTTGCTTTGCAATTACGCACGTTTTTGAGGTCACACAA

consensusID : consensus_8219#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 350
fasta sequence

                              [TGAGCCAATCGACATACAACTCCACTTTGAAATACATGTTCAACTAATGATGGTCTTAAATCATGGAATATATCTGGATAGCGTAATCTTAATATATAATAGTTTGTATACAGTCTCAATGCATAGTCCTGATTAAATTTTTTAGCACGTCGCCAGGGTAGGAGCAATTAATCAGCCGTACATCGTCGTCCACTTCCTAGCTGGAAACCATGCAGTTAGACTGCAGAGGCACTCCGTCGTTGTTGCGGCTGTTCATTTAATTCTAGAAATGCTTTTTCTAATGTTTGAGGAGATAATTCTATCATATTCAAATCTGAACCCATAGTTGATTGACGTAGAAATACATAATC]

[-] EMBL CD065867             [TGAGCCAATCGACATACAACTCCACTTTGAAATACATGTTCAACTAATGATGGTCTTAAATCATGGAATATATCTGGATAGCGTAATCTTAATATATAATAGTTTGTATACAGTCTCAATGCATAGTCCTGATTAAATTTTTTAGCACGTCGCCAGGGTAGGAGCAATTAATCAGCCGTACATCGTCGTCCACTTCCTAGCTGGAAACCATGCAGTTAGACTGCAGAGGCACTCCGTCGTTGTTGCGGCTGTTCATTTAATTCTAGAAATGCTTTTTCTAATGTTTGAGGAGATAATTCTATCATATTCAAATCTGAACCCATAGTTGATTGACGTAGAAATACATAATC]




>consensus_8219#1
TGAGCCAATCGACATACAACTCCACTTTGAAATACATGTTCAACTAATGATGGTCTTAAA
TCATGGAATATATCTGGATAGCGTAATCTTAATATATAATAGTTTGTATACAGTCTCAAT
GCATAGTCCTGATTAAATTTTTTAGCACGTCGCCAGGGTAGGAGCAATTAATCAGCCGTA
CATCGTCGTCCACTTCCTAGCTGGAAACCATGCAGTTAGACTGCAGAGGCACTCCGTCGT
TGTTGCGGCTGTTCATTTAATTCTAGAAATGCTTTTTCTAATGTTTGAGGAGATAATTCT
ATCATATTCAAATCTGAACCCATAGTTGATTGACGTAGAAATACATAATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8219#0      GGCAGCTTCAATAACAAGTACATTAGCACGAAATATGTCGTTTGTTGACCATTCTGCAGG 60
consensus_8219#1      ------------------------------------------------------------
                                                                                  

consensus_8219#0      ATTCCATAAACCTGGTCTAAAGTAGATAAGTGCTCTACCTTCTGAATCTGGTTGAGGCAA 120
consensus_8219#1      ----------------------------------------------------TGAGCCAA 8
                                                                          **** ***

consensus_8219#0      TCGACATACAACTCCACTTTGAAATACATGTTCAACTAATGATGGTCTTAAATCATGGAA 180
consensus_8219#1      TCGACATACAACTCCACTTTGAAATACATGTTCAACTAATGATGGTCTTAAATCATGGAA 68
                      ************************************************************

consensus_8219#0      TATATCTGGATAGCGTAATCTTAATATATAATAGTTTGTATACAGTCTCAATGCATTATC 240
consensus_8219#1      TATATCTGGATAGCGTAATCTTAATATATAATAGTTTGTATACAGTCTCAATGCATAGTC 128
                      ********************************************************  **

consensus_8219#0      CTGATTAAATTTTTTAGCACGTAGAAAACGTAGGAGGAATTCATCAGCCAAACATCCTTG 300
consensus_8219#1      CTGATTAAATTTTTTAGCACGTCGCCAGGGTAGGAGCAATTAATCAGCCGTACATCGTCG 188
                      ********************** *  *  ******* **** *******  ***** * *

consensus_8219#0      TAAACTTTGTAACTGAATACGATGTCTTAACTCGGCAATGGCATTCTGTCGTTGTTGCGG 360
consensus_8219#1      TCCACTTCCTAGCTGGAAACCATGCAGTTAGACTGCAGAGGCACTCCGTCGTTGTTGCGG 248
                      *  ****  ** *** * ** ***   * *  * ***  **** ** *************

consensus_8219#0      CTGTTCATTTAATTCTAGAAATGCTTTTTCTAATGTTTGAGGAGATAATTCTATCATATT 420
consensus_8219#1      CTGTTCATTTAATTCTAGAAATGCTTTTTCTAATGTTTGAGGAGATAATTCTATCATATT 308
                      ************************************************************

consensus_8219#0      CAAATCTGAACCCATAGTTGATTGAGCGTGAGTCAATACATAATCATTATAGCCATCCGT 480
consensus_8219#1      CAAATCTGAACCCATAGTTGATTGA-CGTAGA--AATACATAATC--------------- 350
                      ************************* ***     ***********               

consensus_8219#0      TTATATAACACCCTTGCTTTGCAATTACGCACGTTTTTGAGGTCACACAA 530
consensus_8219#1      --------------------------------------------------