These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8219#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 530 fasta sequence [GGCAGCTTCAATAACAAGTACATTAGCACGAAATATGTCGTTTGTTGACCATTCTGCAGGATTCCATAAACCTGGTCTAAA-GTAGATAAGTGCTCTACCTTCTGAATCTGGTTGAGGCAATCGACATACAACTCCACTTTGAAATACATGTTCAACTAATGATGGTCTTAAATCATGGAATATATCTGGATAGCGTAATCTTAATATATAATAGTTTGTATACAGTCTCAATGCATTATCCTGATTAAA-TTTTTTAGCACGTAGAAAACGTAGGAGGAATTCATCAGCCAAACATCCTTGTAAACTTTGTAACTGAATACGATGTCTTAACTCGGCAATGGCATTCTGTCGTTGTTGCGGCTGTTCATTTAATTCTAGAAATGCTTTTTCTAATGTTTGAGGAGATAATTCTATCATATTCAAATCTGAACCCATAGTTGATTGAGCGTGAGTCAATACATAATCATTATAGCCATCCGTTTATATAACACCCTTGCTTTGCAATTACGCACGTTTTTGAGGTCACACAA] [+] EMBL CD119687 [GGCAGCTTCAATAACAAGTACATTAGCACGAAATATGTCGTTTGTTGACCATTCTGCAGGATTCCATAAACCTGGTCTAAA GTAGATAAGTGCTCTACCTTCTGAATCTGGTTGAGGCAATCGACATACAACTCCACTTTGAAATACATGTTCAACTAATGATGGTCTTAAATCATGGAATATATCTGGATAGCGTAATCTTAATATATAATAGTTTGTATACAGTCTCAATGCATTATCCTGATTAAA TTTTTTAGCACGTAGAAAACGTAGGAGGAATTCATCAGCCAAACATCCTTGTAAACTTTGTAACTGAATACGATGTCTTAACTCGGCAATGGCATTCTGTCGTTGTTGCGGCTGTTCATTTAATTCTAGAAATGCTTTTTCTAATGTTTGAGGAGATAATTCTATCATATTCAAATCTGAACCCATAGTTG ] [+] EMBL CD119628 [ ATTAGCACGAAATATGTCGTCTGTTGACCATTCTGCAGGATTCCATAAACCTGGTCTAAA GTAGATAAGTGCTCTACCTTCTGAATCTGGTTGAGGCAATCGACATACAACTCCACTTTGAAATACATGTTCAACTAATGATGGTCTTAAATCATGGAATATATCTGGATAGCGTAATCTTAATATATAATAGTTTGTATACAGTCTCAATGCATTATCCTGATTAAA TTTTTTAGCACGTAAAAAACGTAGGAGGAATTCATCAGCCAAACATCCTTGTAAACTTTGTAACTGAATACGATGTCTTAACTCGGCAATGGCATTCTGTCGTTGTTGCGGCTGTTCATTTAATTCTAGAAATGCTTTTTCTAATGTTTGAGGAGATAATTCTATCATATTCAAATCTGAACCCATAATTG ] [+] EMBL CD119635 [ ATTAGCACGAAATATGTCGTTTGTTGACCATTCTGCAGGATTCCATAAACCTGGTCTAAA GTAGATAAGTGCTCTACCTTCTGAATCTGGTTGAGGCAATCGACATACAACTCCACTTTGAAATACATGTTCAACTAATGATGGTCTTAAATCATGGAATATATCTGGATAGCGTAATCTTAATATATAATAGTTTGTATACAGTCTCAATGCATTATCCTGATTAAA TTTTTTAGCACGTAGAAAACGTAGGAGGAATTCATCAGCCAAACATCCTTGTAAACTTTGTAACTGAATACGATGTCTTAACTCGGCAATGGCATTCTGTCGTTGTTGCGGCTGTTCATTTAATTCTAGAAATGCTTTTTCTAATGTTTGAGGAGATAATTCTATCATATTCAAATCTGAACCCATANTTG ] [-] EMBL CD078191 [ CACGAAATATGTCGTNTGTTGACCATTCTGCAGGATTCCATAAA CTGGTCTAAANGTAGATAAGTGCTCTACCTTCTGAATCTGGTTGAGGCAATCGACATACAACTCCACTTTGAAATACATGTTCAACTAATGATGGTCTTAAATCATGGAATATATCTGGATAGCGTAATCTTAATATATAATAGTTTGTATACAGTCTCAATGCATTATCCTGATTAAA TTTTTTAGCACGTAGAAAACGTA ] [-] EMBL CD187681 [ CTTAATATATAATAGTTTGTATACAGTCTCAATGCATTATCGTGATTAAATTTTTTTAGCACGTAGAAAACGTAGGAGGAATTCATCAGCCAAACATCCTTGTAAACTTTGTAACTGAATACGATGTCTTAACTCGGCAATGGCATTCTGTCGTTGTTGCGCCTGTTCATTTAATTCGAAAAATGCTTTTTTTAATGTTTGAGGAGATAATTCTATCATATTCAAATCTGAACCCATAGTTGATTGAGCGTGAGTCAATACATAATCATTATAGCCATCCGTTTATATAACACCCTTGCTTTGCAATTACGCACGTTTTTGAGGTCACACAA] consensusID : consensus_8219#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 350 fasta sequence [TGAGCCAATCGACATACAACTCCACTTTGAAATACATGTTCAACTAATGATGGTCTTAAATCATGGAATATATCTGGATAGCGTAATCTTAATATATAATAGTTTGTATACAGTCTCAATGCATAGTCCTGATTAAATTTTTTAGCACGTCGCCAGGGTAGGAGCAATTAATCAGCCGTACATCGTCGTCCACTTCCTAGCTGGAAACCATGCAGTTAGACTGCAGAGGCACTCCGTCGTTGTTGCGGCTGTTCATTTAATTCTAGAAATGCTTTTTCTAATGTTTGAGGAGATAATTCTATCATATTCAAATCTGAACCCATAGTTGATTGACGTAGAAATACATAATC] [-] EMBL CD065867 [TGAGCCAATCGACATACAACTCCACTTTGAAATACATGTTCAACTAATGATGGTCTTAAATCATGGAATATATCTGGATAGCGTAATCTTAATATATAATAGTTTGTATACAGTCTCAATGCATAGTCCTGATTAAATTTTTTAGCACGTCGCCAGGGTAGGAGCAATTAATCAGCCGTACATCGTCGTCCACTTCCTAGCTGGAAACCATGCAGTTAGACTGCAGAGGCACTCCGTCGTTGTTGCGGCTGTTCATTTAATTCTAGAAATGCTTTTTCTAATGTTTGAGGAGATAATTCTATCATATTCAAATCTGAACCCATAGTTGATTGACGTAGAAATACATAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8219#0 GGCAGCTTCAATAACAAGTACATTAGCACGAAATATGTCGTTTGTTGACCATTCTGCAGG 60 consensus_8219#1 ------------------------------------------------------------ consensus_8219#0 ATTCCATAAACCTGGTCTAAAGTAGATAAGTGCTCTACCTTCTGAATCTGGTTGAGGCAA 120 consensus_8219#1 ----------------------------------------------------TGAGCCAA 8 **** *** consensus_8219#0 TCGACATACAACTCCACTTTGAAATACATGTTCAACTAATGATGGTCTTAAATCATGGAA 180 consensus_8219#1 TCGACATACAACTCCACTTTGAAATACATGTTCAACTAATGATGGTCTTAAATCATGGAA 68 ************************************************************ consensus_8219#0 TATATCTGGATAGCGTAATCTTAATATATAATAGTTTGTATACAGTCTCAATGCATTATC 240 consensus_8219#1 TATATCTGGATAGCGTAATCTTAATATATAATAGTTTGTATACAGTCTCAATGCATAGTC 128 ******************************************************** ** consensus_8219#0 CTGATTAAATTTTTTAGCACGTAGAAAACGTAGGAGGAATTCATCAGCCAAACATCCTTG 300 consensus_8219#1 CTGATTAAATTTTTTAGCACGTCGCCAGGGTAGGAGCAATTAATCAGCCGTACATCGTCG 188 ********************** * * ******* **** ******* ***** * * consensus_8219#0 TAAACTTTGTAACTGAATACGATGTCTTAACTCGGCAATGGCATTCTGTCGTTGTTGCGG 360 consensus_8219#1 TCCACTTCCTAGCTGGAAACCATGCAGTTAGACTGCAGAGGCACTCCGTCGTTGTTGCGG 248 * **** ** *** * ** *** * * * *** **** ** ************* consensus_8219#0 CTGTTCATTTAATTCTAGAAATGCTTTTTCTAATGTTTGAGGAGATAATTCTATCATATT 420 consensus_8219#1 CTGTTCATTTAATTCTAGAAATGCTTTTTCTAATGTTTGAGGAGATAATTCTATCATATT 308 ************************************************************ consensus_8219#0 CAAATCTGAACCCATAGTTGATTGAGCGTGAGTCAATACATAATCATTATAGCCATCCGT 480 consensus_8219#1 CAAATCTGAACCCATAGTTGATTGA-CGTAGA--AATACATAATC--------------- 350 ************************* *** *********** consensus_8219#0 TTATATAACACCCTTGCTTTGCAATTACGCACGTTTTTGAGGTCACACAA 530 consensus_8219#1 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||