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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 670 fasta sequence
[TAGTAAGATGCGGGGGAAAACCGAGATTTCGCCGCAACATTCAAAGATGTTTCTAAAACAGATAAATGTATTCACAATGTGATCAATATTTTAAAGAAATATAATTTTGATGGCGCAGTCATAGAAATGTGGGCACAGTTCTCCGGCGTAGAATTGCAATCACTAATAGATTTTACAGTACGACTTTCTGACAATTTACATTCAAACGGCACGCTTTTTGTACTCGTTATCCCACCTCCTGTTTACTATGAAGGCATAGAAGGAAGATTTAAAGAAGAGGATTTTAGATTATCGGCCGATTATGTTGATTATTTTAGCTTAATGACTTACGACTATTCTTCACCTCATAGGCCTGGGCCTAATAGTCCTTTGAGTTGGGTAGAAGAATGCATTAATCGTTTGGTTCCAAAGAATTCTTTAAACCAAGCAAAATTGCGTAGACAAATTTTGGTTGGTTTAAACTTTTATGGAATGGATTACTTACCTAAAAAATTAACCGGTGAACCTATTAGAGGCAATGAGGTTATTGAAATAGCTAAGAATTACCAACCGAACTTTAAATGGGATAAAAAATGGGCTGAACATAGCTTCTCGTACAAGGACAAAAAGTCGCAAGACCACTTGGCTTTCTATCCTACCTTGATGTCGATAGCTCAACGTCTGCAAACTA]
[+] EMBL CD069287 [TAGTAAGATGCGGGGGAAAACCGAGATTTCGCCGCAACATTCAAAGATGTTTCTAAAACAGATAAATGTATTCACAATGTGATCAATATTTTAAAGAAATATAATTTTGATGGCGCAGTCATAGAAATGTGGGCACAGTTCTCCGGCGTAGAATTGCAATCACTAATAGATTTTACAGTACGACTTTCTGACAATTTACATTCAAACGGCACGCTTTTTGTACTCGTTATCCCACCTCCTGTTTACTATGAAGGCATAGAAGGAAGATTTAAAGAAGAGGCTTTCAGATTATCGGCCGATTATGTCGATTATTTTAGCTTAATGACTTACGACTATTCTTCACCTCATAGGCCTGGGCCTAATAGTCCTTCGAGTTGGGTAGAAGAATGCATTACTCGTTCGGTTCCAAAGAATTCTTTAAACCAAGCAAAATTGCGTAGACCAATg ]
[+] EMBL CD146671 [ ATGAAGGCACAGAAGGAAGATTTAAAGAAGAGGATTTTAGATTATTGGCCGATTATGTTGATTATTTTAGCTTAATGACTTACGACTATTCTTCACCTCATAGGCCTGGGCCTAATAGTCCTTTGAGTTGGGTAGAAGAATGCATTAATCGTTTGGTTCCAAAGAATTCTTTAAACCAAGCAAAATTGCGTAGACAAATTTTGGTTGGTTTAAACTTTTATGGAATGGATTACTTACCTAAAAAATTAACCGGTGAACCTATTAGAGGCAATGAGGTTATTGAAATAGCTAAGAATTACCAACCGAACTTTAAATGGGATAAAAAATGGGCTGAACATAGCTTCTCGTACAAGGACAAAAAGTCGCAAGACCACTTGGCTTTCTATCCTACCTTGATGTCGATAGCTCAACGTCTGCAAACT ]
[-] EMBL CD166072 [ ATG AGGCATAGAAGG AGATTTAAAGAAGAGGA TTTAGATTATGGCCCGATTATGTTGA TATTTTAGCTTAATGACTTACGACTA TCTTCACCTCATAGGCCT GGCCTAATAGTCCTNTGAGTTGGGTAGAAGAATGCATTAATCGTTTGGTTCCAAAGAATTCTNTAAACCAAGCAAAATTGCGTAGACAAATTTTGGTTGGTTTAAACTTTTATGGAATGGATTACTTACCTAAAAAAATAACCGGTGAACCTATTAGAGGCAATGAGGTTATTGAAATAGCTAAGAATTACCAACCGAACTTTAAATGGGATAAAAAATGGGCTGAACATAGCTTCTCGTACAAGGACAAAAAGTCGCAAGACCACTTGGCTTTCTATCCTACCTTGATGTCGATAGCTCAACGTCTGCAAACTA]
consensusID : consensus_8228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence
[GCCTGCTTATATTGACAATCACTTTTCATATATACATACATCCGTTTTGTCCGATTATGTTAAGTTATAGATCAATAATGTTGGGGACGTAATTAGGGGAACTCATTCTGACAACTCTTTAACGTCTTCGCAAAGATAATTTTCAATCAAATATTGTCTCAAGTGACTTCAGTGTAGCTAACGTTTAAAGCAATCATTTCACAAATTAATATTTTATTTTCTTTATTCTGTTATTTAGGGTTATTGAAATAGCTAAGAATTACCAACCGAACTTTAAATGGGATAAAAAATGGGCTGAACATAGCTTCTCGTACAAGTAAGACTACTTTTCTCTTTGCTCAATAAATACAGTGAAACAATTACCATAGGATAGTCATTCTGAAAGTACTATAAATTTTTCATTACGATATTCTATGATTTCAAGCTTTTTTGAACATTGCATCATTATTTGTGGAAAAACCTAATGATAGTAAAATAATCTTAAAAGGGAGTCTGTGACTTCAAATTCAGTAGTCAATGTCATCTTCACTTGGACTATGACTTTNTATCTAATGTATTTTTGCTATTGGCATTNTTCTATCTCAATTTCTATATATGCTTTGAATCGG]
[+] EMBL CD078839 [GCCTGCTTATATTGACAATCACTTTTCATATATACATACATCCGTTTTGTCCGATTATGTTAAGTTATAGATCAATAATGTTGGGGACGTAATTAGGGGAACTCATTCTGACAACTCTTTAACGTCTTCGCAAAGATAATTTTCAATCAAATATTGTCTCAAGTGACTTCAGTGTAGCTAACGTTTAAAGCAATCATTTCACAAATTAATATTTTATTTTCTTTATTCTGTTATTTAGGGTTATTGAAATAGCTAAGAATTACCAACCGAACTTTAAATGGGATAAAAAATGGGCTGAACATAGCTTCTCGTACAAGTAAGACTACTTTTCTCTTTGCTCAATAAATACAGTGAAACAATTACCATAGGATAGTCATTCTGAAAGTACTATAAATTTTTCATTACGATATTCTATGATTTCAAGCTTTTTTGAACATTGCATCATTATTTGTGGAAAAACCTAATGATAGTAAAATAATCTTAAAAGGGAGTCTGTGACTTCAAATTCAGTAGTCAATGTCATCTTCACTTGGACTATGACTTTNTATCTAATGTATTTTTGCTATTGGCATTNTTCTATCTCAATTTCTATATATGCTTTGAATCGG]
consensusID : consensus_8228#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence
[AAAATATATTTCCAAAAGATAAAAAATATGCACATAAATACCATGACGATATGTAAAGTTTTGGCATTAAAACAGTGAATAAAAACTATTTAGTCCTTGTCCTATCTCCCAAATAGAAACACCCGTACCTCTGGATAGTATAGTTTGCAGACGTTGAGCTATCGACATCAAGGTAGGATAGAAAGCCAAGTGGTCTTGCGACTTTTTGTCCCTACAACAAAAACAATATACGGCATTTAGCAAAAAAAATTGAAGTAGAATGAAAGACAAAAACAACGGAAACTGGCATGTGATGGAAAATACTGGGGGATAAATTTAAGTTACAATACTCTGAAATAAATTAAACGGAAAACGAACAGGTTGCAATGAAATAAACATGTTTGCAACAGAACAAGGGAAAATATTGACTAGATAGCTTCAAGTGTTACGTAAAGACATATTTTTTATTGACATTAAATAAAAGCCGAAGCACAACAATTTTCTCCTCTTAATGAACCTTATCTAGAAGGTTGAACCTTCCCAAATGTATTAAACTAAAAATCAACGAATAA]
[+] EMBL CD073299 [AAAATATATTTCCAAAAGATAAAAAATATGCACATAAATACCATGACGATATGTAAAGTTTTGGCATTAAAACAGTGAATAAAAACTATTTAGTCCTTGTCCTATCTCCCAAATAGAAACACCCGTACCTCTGGATAGTATAGTTTGCAGACGTTGAGCTATCGACATCAAGGTAGGATAGAAAGCCAAGTGGTCTTGCGACTTTTTGTCCCTACAACAAAAACAATATACGGCATTTAGCAAAAAAAATTGAAGTAGAATGAAAGACAAAAACAACGGAAACTGGCATGTGATGGAAAATACTGGGGGATAAATTTAAGTTACAATACTCTGAAATAAATTAAACGGAAAACGAACAGGTTGCAATGAAATAAACATGTTTGCAACAGAACAAGGGAAAATATTGACTAGATAGCTTCAAGTGTTACGTAAAGACATATTTTTTATTGACATTAAATAAAAGCCGAAGCACAACAATTTTCTCCTCTTAATGAACCTTATCTAGAAGGTTGAACCTTCCCAAATGTATTAAACTAAAAATCAACGAATAA]
consensusID : consensus_8228#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 253 fasta sequence
[GATTATGTTGATTATTTTAGCTTAATGACTTACGACTATTCTTCACCTCATAGGTGAGTTTATTCAAACAATAAATTCGTATATTTTTTATCCTCTAAAGTCTGTTGAAGTCTAATTAGCTATTCCTAATTTTGAAGTTTTTTTCTTCCTGGAAAACGAATCTTGGTAGGTTTCATATGAAATTTAACATTCCGAAAAAAATAAAAAGGTTACAGGTATTTCTAATCACTAATGTTTTCGAAGCATCGCTTTT]
[+] EMBL CD120284 [GATTATGTTGATTATTTTAGCTTAATGACTTACGACTATTCTTCACCTCATAGGTGAGTTTATTCAAACAATAAATTCGTATATTTTTTATCCTCTAAAGTCTGTTGAAGTCTAATTAGCTATTCCTAATTTTGAAGTTTTTTTCTTCCTGGAAAACGAATCTTGGTAGGTTTCATATGAAATTTAACATTCCGAAAAAAATAAAAAGGTTACAGGTATTTCTAATCACTAATGTTTTCGAAGCATCGCTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8228#0 TAGTAAGATGCGGGGGAAAACCGAGATTTCGCCGCAACATTCAAAGATGTTTCTAAAACA 60
consensus_8228#3 ------------------------------------------------------------
consensus_8228#1 --------------------------GCCTGCTTATATTGACAATCACTTTTCATATATA 34
consensus_8228#2 ----------------------------------------AAAATATATTTCCAAAAGAT 20
consensus_8228#0 GATAAATGTATTCACAATGTGATCAATATTTTAAAGAAATATAATTTTGATGGCGCAGTC 120
consensus_8228#3 ------------------------------------------------------------
consensus_8228#1 CATACATCCGTTTTGTCCGATTATGTTAAGTTATAGATCAATAATGTTGGGGACGTAATT 94
consensus_8228#2 AAAAAATATGCACATAAATACCATGACGATATGTAAAGTTTTGGCATTAAAA---CAGTG 77
consensus_8228#0 ATAGAAATGTGGGC--ACAGTTCTCCGGCGT-------AGAATTGCAATCACTA-ATAGA 170
consensus_8228#3 ------------------------------------------------------------
consensus_8228#1 AGGGGAACTCATTCTGACAACTCTTTAACGTCTTCGCAAAGATAATTTTCAATC-AAATA 153
consensus_8228#2 AATAAAAACTATTTAGTCCTTGTCCTATCTCCCAAATAGAAACACCCGTACCTCTGGATA 137
consensus_8228#0 TTTTACAGTACGACTTTCTGACAATTTACATTCAAACGGCACGCTTTTTGTACT--CGTT 228
consensus_8228#3 ------------------------------------------------------------
consensus_8228#1 TTGTCTCAAGTGACTTCAGTGTAGCTAACGTTTAAAGCAATCATTTCACAAATTAATATT 213
consensus_8228#2 GTATAGTTTGCAGACGTTGAGCTATCGACATCAAGGTAGGATAGAAAGCCAAGTGGTCTT 197
consensus_8228#0 ATCCCACCTCCTGTTTACTATGAAGGCATAGAAGGAAGATTTAAAG-----AAGAGGATT 283
consensus_8228#3 ------------------------------------------------------------
consensus_8228#1 TTATTTTCTTTATTCTGTTATTTAGGGTTATTGAAATAGCTAAGAATTACCAACCGAACT 273
consensus_8228#2 GCGACTTTTTGTCCCTACAACAAAAACAATATACGGCATTTAG-------CAAAAAAAAT 250
consensus_8228#0 TTAGATTATCGGCCGATTATGTTGATTATTTTAGCTTAATGACTTACGACTATTCTTCAC 343
consensus_8228#3 --------------GATTATGTTGATTATTTTAGCTTAATGACTTACGACTATTCTTCAC 46
consensus_8228#1 TTAAATGGGATAAAAAATGGGCTGAACATAGCTTCTCGTACAAGTAAGACTACTTTTCTC 333
consensus_8228#2 TGAAGTAGAATGAAAGACAAAAACAACGGAAACTGGCATGTGATGGAAAATACTGGGGGA 310
* * ** *
consensus_8228#0 CTCATAGGCCTGGGCCTAATAGTCCTTTGAGTTGGGTAGAAGAATGCATTAATCGTTTGG 403
consensus_8228#3 CTCATAGG--TGAGTTTATTCAAACAATAAATTCGT-----ATATTTTTTATCCTCTAAA 99
consensus_8228#1 TTTGCTCAA-TAAATACAGTGAAACAATTACCATAG-------GATAGTCATTCTGAAAG 385
consensus_8228#2 TAAATTTAAGTTACAATACTCTGA-AATAAATTAAAC-----GGAAAACGAACAGGTTGC 364
* * * * * *
consensus_8228#0 TTCCAAAGAATTCTT-TAA-ACCAAGCAAAATTGCGTAGACAAATTTTGGTTGGTTTAAA 461
consensus_8228#3 GTCTGTTGAAGTCTAATTA-GCTATTCCTAATTTTGAAGTTTTTTTCTTCCTGG--AAAA 156
consensus_8228#1 TACTATAAATTTTTCATTACGATATTCTATGATTTCAAGCTTTTTTGAACATTGCATCAT 445
consensus_8228#2 AATGAAATAAACATGTTTGCAACAGAACAAGG---GAAAATATTGACTAGATAGCTTCAA 421
* * * * * * * *
consensus_8228#0 CTTTTATGGAATGGATTACTTACCTAAAAAATTAACCGGTGAACCTATTAGAGGCAATGA 521
consensus_8228#3 CGAATCTTGG-TAGGTTTCATATGAAATTTAACATTCCGAAAAAAATAAAAAGGTTAC-A 214
consensus_8228#1 TATTTGTGGA-AAAACCTAATGATAGTAAAATAATCTTAAAAGGGAGTCTGTGACTTCAA 504
consensus_8228#2 GTGTTACGTA-AAGACATATTTTTTAT----TGACATTAAATAAAAGCCGAAGCACAACA 476
* * * * *
consensus_8228#0 GGTTATTGAAATAGCTAAGAATTAC--CAACCGA-ACTTTAAATGGGATAAAAAATGGGC 578
consensus_8228#3 GGTATTTCTAATCACTAATGTTTTC--GAAGCATCGCTTTT------------------- 253
consensus_8228#1 ATTCAGTAGTCAATGTCATCTTCACTTGGACTATGACTTTNTATCTAATGTATTTTTGCT 564
consensus_8228#2 ATTTTCTCCTCTTAATGAACCTTATCTAGAAGGTTGAACCTTCCCAAATGTATTAAACTA 536
* * * * * *
consensus_8228#0 TGAACATAGCTTCTCGTACAAGGACAAAAAGTCGCAAGACCACTTGGCTTTCTATCCTAC 638
consensus_8228#3 ------------------------------------------------------------
consensus_8228#1 ATTGGCATTNTTCTATCTCAATTTCTATATATGCTTTGAATCGG---------------- 608
consensus_8228#2 AAAATCAACGAATAA--------------------------------------------- 551
consensus_8228#0 CTTGATGTCGATAGCTCAACGTCTGCAAACTA 670
consensus_8228#3 --------------------------------
consensus_8228#1 --------------------------------
consensus_8228#2 --------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||