These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8234#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 546 fasta sequence [CCTGNAATTCGGCACCAGGGTACTGGGCTACAACCAGTTGTCGTGAAGCGTTAACAGATCAAAATCTTACTCAAGCTTTTTCATGGCACGTCCATGTTGCTATGCTCTCAAGACCCGAGCATTTAATTGCTGCGTTAGAAGAGGATGGACGTTTTACATCGAAAGAACAACAGATTATTGAAAAATCTTTATCGGGTCGTCGTTTATGTATTGGAATCAAGCAT-TTGCTTGATTTGATTGACCT-CGTTTCGAAAAACGATCCAGATCATCGTGTTGCTGCATTTCTTGCTAAATTAGAAGAAGTTGGCATTGTCGATGAATAAGA-ACAAATGAATAATATTTATGACAGTTTGCTGCCGTCTCTACAGATATTTATGATCAAAATGGTTGTGTATGCCAAAACAAGAAGAGTCTCAATTCCACGATATATATGTATATTCTATTGTTGAATTTGTTTATTTATTTTAATCTTTAATCATTCCGTGAATATTTATATTTTCCTCAAACTATGATTGTTATATAATCACTTGATTCTTTCAATTCATT] [+] EMBL CD081506 [CCTGNAATTCGGCACCAGGGTACTGGGCTACAACCAGTTGTCGTGAAGCGTTAACAGATCAAAATCTTACTCAAGCTTTTTCATGGCACGTCCATGTTGCTATGCTCTCAAGACCCGAGCATTTAATTGCTGCGTTAGAAGAGGATGGACGTTTTACATCGAAAGAACAACAGATTATTGAAAAATCTTTATCGGGTCGTCGTTTATGTATTGGAATCAAGCAT TTGCTTGATTTGATTGACCT CGTTTCGAAAAACGATCCAGATCATCGTGTTGCTGCATTTCTTGCTAAATTAGAAGAAGTTGGCATTGTCGATGAATAAGA ACAAATGAATAATATTTATGACAGTTTGCTGCCATCTCTACAGATATTTATGATCAAAATGGTTGTGTATGCCAAAACAAGAAGAGTCTCAATTCCACGATATATATGTATATTCTATTGTTGAATTTGTTTATTTATTTTAATCTTTAATCATTCCGTGAATATTTATATTTTCCTCAAACTATAATTGTTATATAATCACTTGATTCTTTCAATTCAT ] [+] EMBL CD090393 [ CATCTTACCTGATTCCAGTGACATACGTTTCGAAAAACGATCCAGATCATCGTGTTGCTGCATTTCTTGCTAAATTAGAAGAAGTTGGCATTGTCGATGAATAAGA ACAAATGAATAATATTTATGACAGTTTGCTGCCGTCTCTACAGATATTTATGATCAAAATGGTTGTGTATGCCAAAACAAGAAGAGTCTCAATTCCACGATATATATGTATATTCTATTGTTGAATTTGTTTATTTATTTTAATCTTTAATCATTCCGTGAATATTTATATTTTCCTNCAACTATGATTGTTATATAATCACTTGATTCTTTCAATTCtt ] [-] EMBL CD136611 [ anGAAGTTGGCATTGTCGATGAATAAGG ACAAATGAATAATATTTATGACAGTTTGCTGCCGTCTCTACAGATATTTATGATCAAAATGGTTGTGTATGCCAAAACAAGAAGAGTCTCAATTCCACGATATATATGTATATTCTATTGTTGAATTTGTTTATTTATTTTAATCTTTAATCATTCCGTGAATATTTATATTTTCCTCAAACTATGATTGTTATATAATCACTTGATTCTTTCAATTCATT] [-] EMBL CD090391 [ tgnTCGATGAAT AGANNCAAATGAATAATATTTATGACAGTTTGCTGCCGTCTCTACAGATATTTATGATCAAAATGGTTGTGTATGCCAAAACAAGAAGAGTCTCAATTCCACGATATATATGTATATTCTATTGTTGAATTTGTTTATTTATTTTAATCTTTAATCATTCCGTGAATATTTATATTTTCCTCAAACTATGATTGTTATATAATCACTTGATTCTTTCAATTCtt ] consensusID : consensus_8234#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 447 fasta sequence [AACCGATATATTTTCATTCTATGAAGATCCAAATTTAAAGGAAAATGATTAAATAAATAAGTTTTTATTATATCACGATATGTCTGTTCTAAACTGGCTCATTATGATTTTGTGTTAAAGGGAATGAGTGAAAAGTAAATAAACGTTTATTGTAATATGCCCAGGGGGAAACAAAAACCATACCCAACCACACTAATATGTATATATATAAATATTACCCATCCACGTGCATAAATAATAATAGTAATAATAATAATCGTGTTACAAATGATGATCAATGACGAATCCGTAAAACGTTACGTAATAACGCGTAGGGTACTCTAAAAAAACAAGAGTAACCAGGTAAATTTCGCATATAATATGAACTGTGAAATAATGACAATAAATTTATCAGAGGGAAAAAAACCAAGAAAAAAAATGAATTGAAAGAATCAAGTGATTATATAA] [+] EMBL CD075330 [AACCGATATATTTTCATTCTATGAAGATCCAAATTTAAAGGAAAATGATTAAATAAATAAGTTTTTATTATATCACGATATGTCTGTTCTAAACTGGCTCATTATGATTTTGTGTTAAAGGGAATGAGTGAAAAGTAAATAAACGTTTATTGTAATATGCCCAGGGGGAAACAAAAACCATACCCAACCACACTAATATGTATATATATAAATATTACCCATCCACGTGCATAAATAATAATAGTAATAATAATAATCGTGTTACAAATGATGATCAATGACGAATCCGTAAAACGTTACGTAATAACGCGTAGGGTACTCTAAAAAAACAAGAGTAACCAGGTAAATTTCGCATATAATATGAACTGTGAAATAATGACAATAAATTTATCAGAGGGAAAAAAACCAAGAAAAAAAATGAATTGAAAGAATCAAGTGATTATATAA] [+] EMBL AI975768 [ ACCGATATATTTTCATTCTATGAAGATACAAATTTAAAGGAAAATGATTAAATAAATAAGTTTTTATTATATCACGATATGTCTGTTCTAAACTGGCTCATTATGATTTTGTGTTAAAGGGAATGAGTGAGAAGTAAATAAACGTTTATTGTAATATGCACAGTGGGAAACAAAAACCATACACAACCACACTAATATGTATATATATAAATATTACGCATCCACGTGCATAAATAATAATAGTAATAATAATAATCGTGTTACGAATGATGATCAATGACGAATACGTAAGACGTTACGTAATAACGCGTAGGGTACTCTAAGAGAACAAGAGTAACCAGGTAAATTTCGCATATAATATGAACTGTGAAAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8234#0 CCTGNAATTCGGCACCAGGGTACTGGGCTACAACCAGT-TGTCGTGAAGCGTTAACAGAT 59 consensus_8234#1 -------------------------------AACCGATATATTTTCATTCTATGA-AGAT 28 **** * * * * * * * * **** consensus_8234#0 CAAAATCTTACTCAAGCTTTTTCATGGCACGTCCATGTTGCTATGCTCTCAAGACCCGAG 119 consensus_8234#1 CCAAATTTAAAGGAAAATGATTAA----ATAAATAAGTTTTTATTATATCACGATATGTC 84 * **** * * ** * ** * * * *** *** * *** ** * consensus_8234#0 CATTTAATTGCTGCGTTAGAAGAGGATGGACGTTTTACATCGAAAGAACAACAGATTATT 179 consensus_8234#1 TGTTCTAA-ACTGGCTCATTATGATTT---TGTGTTAAAGGGAATGAGTGAAAAGTAAAT 140 ** * *** * * * * ** *** * *** ** * * * * * consensus_8234#0 GAAAAATCTTTATCGGGTCGTCGTTTATGTATTGGAATCAAGCATTTGCTTGATTTGATT 239 consensus_8234#1 ---AAACGTTTATTGTAATAT-GCCCAGGGG--GAAACAAAAACCATACCCAACCACACT 194 *** ***** * * * * * * ** ** * * * * * consensus_8234#0 GACCT-CGTTTCGAAAAACGATCCAGATCATCGTGTTGCTGCATTTCTTGCTAAATTAGA 298 consensus_8234#1 AATATGTATATATATAAATATTACCCATCCACGTGCATAAATAATAATAGTAATAATAAT 254 * * * * * *** * * *** **** * * * * * * ** consensus_8234#0 AGAAGTTGGCATTGTCGATGAATAAGAACAAATGAATAATAT-TTATGACAGTTTGCTGC 357 consensus_8234#1 AATCGT-GTTACAAATGATGATCAATGACGAATCCGTAAAACGTTACGTAATAACGCGTA 313 * ** * * ***** ** ** *** *** * *** * * ** consensus_8234#0 CGTCTCTACAGATATTTATGATCAAAATGGTTGTGTATGCCAAAACAAGAAGAGTCTCAA 417 consensus_8234#1 GGGTACTCTAAAAAAACAAGAGTAACCAGGTAAATTTCGC--ATATAATATGAACTGTGA 371 * ** * * * * ** ** *** * ** * * ** * ** * consensus_8234#0 TTCCACGATATATATGTATATTCTATTGTTGAATTTGTTTATTTATTTTAATCTTTAATC 477 consensus_8234#1 AATAATGACA-ATAAATTTATCAGAGGGAAAAAAACCAAGAAAAAAAATGAATTGAAAGA 430 * ** * *** * *** * * ** * * * * * ** consensus_8234#0 ATTCCGTGAATATTTATATTTTCCTCAAACTATGATTGTTATATAATCACTTGATTCTTT 537 consensus_8234#1 ATCAAGTGATTATATAA------------------------------------------- 447 ** **** *** ** consensus_8234#0 CAATTCATT 546 consensus_8234#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||