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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8234#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 546 fasta sequence
[CCTGNAATTCGGCACCAGGGTACTGGGCTACAACCAGTTGTCGTGAAGCGTTAACAGATCAAAATCTTACTCAAGCTTTTTCATGGCACGTCCATGTTGCTATGCTCTCAAGACCCGAGCATTTAATTGCTGCGTTAGAAGAGGATGGACGTTTTACATCGAAAGAACAACAGATTATTGAAAAATCTTTATCGGGTCGTCGTTTATGTATTGGAATCAAGCAT-TTGCTTGATTTGATTGACCT-CGTTTCGAAAAACGATCCAGATCATCGTGTTGCTGCATTTCTTGCTAAATTAGAAGAAGTTGGCATTGTCGATGAATAAGA-ACAAATGAATAATATTTATGACAGTTTGCTGCCGTCTCTACAGATATTTATGATCAAAATGGTTGTGTATGCCAAAACAAGAAGAGTCTCAATTCCACGATATATATGTATATTCTATTGTTGAATTTGTTTATTTATTTTAATCTTTAATCATTCCGTGAATATTTATATTTTCCTCAAACTATGATTGTTATATAATCACTTGATTCTTTCAATTCATT]
[+] EMBL CD081506 [CCTGNAATTCGGCACCAGGGTACTGGGCTACAACCAGTTGTCGTGAAGCGTTAACAGATCAAAATCTTACTCAAGCTTTTTCATGGCACGTCCATGTTGCTATGCTCTCAAGACCCGAGCATTTAATTGCTGCGTTAGAAGAGGATGGACGTTTTACATCGAAAGAACAACAGATTATTGAAAAATCTTTATCGGGTCGTCGTTTATGTATTGGAATCAAGCAT TTGCTTGATTTGATTGACCT CGTTTCGAAAAACGATCCAGATCATCGTGTTGCTGCATTTCTTGCTAAATTAGAAGAAGTTGGCATTGTCGATGAATAAGA ACAAATGAATAATATTTATGACAGTTTGCTGCCATCTCTACAGATATTTATGATCAAAATGGTTGTGTATGCCAAAACAAGAAGAGTCTCAATTCCACGATATATATGTATATTCTATTGTTGAATTTGTTTATTTATTTTAATCTTTAATCATTCCGTGAATATTTATATTTTCCTCAAACTATAATTGTTATATAATCACTTGATTCTTTCAATTCAT ]
[+] EMBL CD090393 [ CATCTTACCTGATTCCAGTGACATACGTTTCGAAAAACGATCCAGATCATCGTGTTGCTGCATTTCTTGCTAAATTAGAAGAAGTTGGCATTGTCGATGAATAAGA ACAAATGAATAATATTTATGACAGTTTGCTGCCGTCTCTACAGATATTTATGATCAAAATGGTTGTGTATGCCAAAACAAGAAGAGTCTCAATTCCACGATATATATGTATATTCTATTGTTGAATTTGTTTATTTATTTTAATCTTTAATCATTCCGTGAATATTTATATTTTCCTNCAACTATGATTGTTATATAATCACTTGATTCTTTCAATTCtt ]
[-] EMBL CD136611 [ anGAAGTTGGCATTGTCGATGAATAAGG ACAAATGAATAATATTTATGACAGTTTGCTGCCGTCTCTACAGATATTTATGATCAAAATGGTTGTGTATGCCAAAACAAGAAGAGTCTCAATTCCACGATATATATGTATATTCTATTGTTGAATTTGTTTATTTATTTTAATCTTTAATCATTCCGTGAATATTTATATTTTCCTCAAACTATGATTGTTATATAATCACTTGATTCTTTCAATTCATT]
[-] EMBL CD090391 [ tgnTCGATGAAT AGANNCAAATGAATAATATTTATGACAGTTTGCTGCCGTCTCTACAGATATTTATGATCAAAATGGTTGTGTATGCCAAAACAAGAAGAGTCTCAATTCCACGATATATATGTATATTCTATTGTTGAATTTGTTTATTTATTTTAATCTTTAATCATTCCGTGAATATTTATATTTTCCTCAAACTATGATTGTTATATAATCACTTGATTCTTTCAATTCtt ]
consensusID : consensus_8234#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 447 fasta sequence
[AACCGATATATTTTCATTCTATGAAGATCCAAATTTAAAGGAAAATGATTAAATAAATAAGTTTTTATTATATCACGATATGTCTGTTCTAAACTGGCTCATTATGATTTTGTGTTAAAGGGAATGAGTGAAAAGTAAATAAACGTTTATTGTAATATGCCCAGGGGGAAACAAAAACCATACCCAACCACACTAATATGTATATATATAAATATTACCCATCCACGTGCATAAATAATAATAGTAATAATAATAATCGTGTTACAAATGATGATCAATGACGAATCCGTAAAACGTTACGTAATAACGCGTAGGGTACTCTAAAAAAACAAGAGTAACCAGGTAAATTTCGCATATAATATGAACTGTGAAATAATGACAATAAATTTATCAGAGGGAAAAAAACCAAGAAAAAAAATGAATTGAAAGAATCAAGTGATTATATAA]
[+] EMBL CD075330 [AACCGATATATTTTCATTCTATGAAGATCCAAATTTAAAGGAAAATGATTAAATAAATAAGTTTTTATTATATCACGATATGTCTGTTCTAAACTGGCTCATTATGATTTTGTGTTAAAGGGAATGAGTGAAAAGTAAATAAACGTTTATTGTAATATGCCCAGGGGGAAACAAAAACCATACCCAACCACACTAATATGTATATATATAAATATTACCCATCCACGTGCATAAATAATAATAGTAATAATAATAATCGTGTTACAAATGATGATCAATGACGAATCCGTAAAACGTTACGTAATAACGCGTAGGGTACTCTAAAAAAACAAGAGTAACCAGGTAAATTTCGCATATAATATGAACTGTGAAATAATGACAATAAATTTATCAGAGGGAAAAAAACCAAGAAAAAAAATGAATTGAAAGAATCAAGTGATTATATAA]
[+] EMBL AI975768 [ ACCGATATATTTTCATTCTATGAAGATACAAATTTAAAGGAAAATGATTAAATAAATAAGTTTTTATTATATCACGATATGTCTGTTCTAAACTGGCTCATTATGATTTTGTGTTAAAGGGAATGAGTGAGAAGTAAATAAACGTTTATTGTAATATGCACAGTGGGAAACAAAAACCATACACAACCACACTAATATGTATATATATAAATATTACGCATCCACGTGCATAAATAATAATAGTAATAATAATAATCGTGTTACGAATGATGATCAATGACGAATACGTAAGACGTTACGTAATAACGCGTAGGGTACTCTAAGAGAACAAGAGTAACCAGGTAAATTTCGCATATAATATGAACTGTGAAAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8234#0 CCTGNAATTCGGCACCAGGGTACTGGGCTACAACCAGT-TGTCGTGAAGCGTTAACAGAT 59
consensus_8234#1 -------------------------------AACCGATATATTTTCATTCTATGA-AGAT 28
**** * * * * * * * * ****
consensus_8234#0 CAAAATCTTACTCAAGCTTTTTCATGGCACGTCCATGTTGCTATGCTCTCAAGACCCGAG 119
consensus_8234#1 CCAAATTTAAAGGAAAATGATTAA----ATAAATAAGTTTTTATTATATCACGATATGTC 84
* **** * * ** * ** * * * *** *** * *** ** *
consensus_8234#0 CATTTAATTGCTGCGTTAGAAGAGGATGGACGTTTTACATCGAAAGAACAACAGATTATT 179
consensus_8234#1 TGTTCTAA-ACTGGCTCATTATGATTT---TGTGTTAAAGGGAATGAGTGAAAAGTAAAT 140
** * *** * * * * ** *** * *** ** * * * * *
consensus_8234#0 GAAAAATCTTTATCGGGTCGTCGTTTATGTATTGGAATCAAGCATTTGCTTGATTTGATT 239
consensus_8234#1 ---AAACGTTTATTGTAATAT-GCCCAGGGG--GAAACAAAAACCATACCCAACCACACT 194
*** ***** * * * * * * ** ** * * * * *
consensus_8234#0 GACCT-CGTTTCGAAAAACGATCCAGATCATCGTGTTGCTGCATTTCTTGCTAAATTAGA 298
consensus_8234#1 AATATGTATATATATAAATATTACCCATCCACGTGCATAAATAATAATAGTAATAATAAT 254
* * * * * *** * * *** **** * * * * * * **
consensus_8234#0 AGAAGTTGGCATTGTCGATGAATAAGAACAAATGAATAATAT-TTATGACAGTTTGCTGC 357
consensus_8234#1 AATCGT-GTTACAAATGATGATCAATGACGAATCCGTAAAACGTTACGTAATAACGCGTA 313
* ** * * ***** ** ** *** *** * *** * * **
consensus_8234#0 CGTCTCTACAGATATTTATGATCAAAATGGTTGTGTATGCCAAAACAAGAAGAGTCTCAA 417
consensus_8234#1 GGGTACTCTAAAAAAACAAGAGTAACCAGGTAAATTTCGC--ATATAATATGAACTGTGA 371
* ** * * * * ** ** *** * ** * * ** * ** *
consensus_8234#0 TTCCACGATATATATGTATATTCTATTGTTGAATTTGTTTATTTATTTTAATCTTTAATC 477
consensus_8234#1 AATAATGACA-ATAAATTTATCAGAGGGAAAAAAACCAAGAAAAAAAATGAATTGAAAGA 430
* ** * *** * *** * * ** * * * * * **
consensus_8234#0 ATTCCGTGAATATTTATATTTTCCTCAAACTATGATTGTTATATAATCACTTGATTCTTT 537
consensus_8234#1 ATCAAGTGATTATATAA------------------------------------------- 447
** **** *** **
consensus_8234#0 CAATTCATT 546
consensus_8234#1 ---------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||