These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8243#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1117 fasta sequence [GCCAANAATTCGGCACGAGGCCNAAATCATGATATCCAATATGGAACAAAATGAAACGATGTTATCTCCGTATGCCACCCCGTCACATCATTCTCATCATCATCATCATTATCATAATAGTTACCAAGATCATAAAGAAATCATGACATCCAATATGGAAGACAGTGTAACAGAAGGAGAAGACGAAGAAAAGGAAGAATATGTTTTAGTTTATTTAATTGATTTTACACGTTGGGAATTAGTAACAAATTGTAATCAAATCAAAGATGAAAATTTTTTATATGGTTTAAATTATTTAATTGAATTATTTAAACGTGCATCATTAGATTCTACACCATTGGATAAAATTCCTAGTCTATCTATAACTTGATCATTGACAAGGATTGGTATGTTTTTATATATATAGTTGATATCATAAGTCAATTGAAGCTAGACCATCGTGGTGGAAAACCTGGAAGCACTGTTTGACAGCCGTTTCGTCCTATTGTGGGATCAGGTTTTCCTTGGTGGTCCTAGCCTCAATTAACTCATGGTTTCAACTATATATATAAAAAAAATTACTAAAAAAATCTCCACAGAAACCCCCCACCCCCTAATCATTCGTATTATCAAGGAGGANAAACAAGCCAACAAACAAACATGTACAGTGTTCACATTTTATGTATTCAATAATCAATTTATTTTGCAAAAAATCTTTTTTTTTTGCTGCTCATTTTTCTTCTACCCTTTTTTTTGAACTGCCAAAAAATGTTCGTCTTTCATTACTAATTACTATCAGTAGTAAAGTGAATCTGTTTTTTTTTAAAATATTTCTATATTGAACTGTATCAATAAATCAAGGTTAAGAAACAATTGGGGGTTGGAGGGGAGGTGGAGTAGGGATTTCTCTATTTCTTTACATATAGTTTATAGAAATATATTTTATTACCCTATTACCATGATAGATTATATATGATGAGTGTATCCATCTCAAGGTTTATTTTTATTATTCTTATTATTGTAAATCTTATTTTGTTATAATTTTCATTAGAAATGAAGATTTTTATATTTTGTATTATATTGTATGTTCTAATATATTAGAACAAGACCTA-ATGTAATTTGAATTTGATACCCAATT] [+] EMBL CD080773 [GCCAANAATTCGGCACGAGGCCNAAATCATGATATCCAATATGGAACAAAATGAAACGATGTTATCTCCGTATGCCACCCCGTCACATCATTCTCATCATCATCATCATTATCATAATAGTTACCAAGATCATAAAGAAATCATGACATCCAATATGGAAGACAGTGTAACAGAAGGAGAAGACGAAGAAAAGGAAGAATATGTTTTAGTTTATTTAATTGATTTTACACGTTGGGAATTAGTAACAAATTGTAATCAAATCAAAGATGAAAATTTTTTATATGGTTTAAATTATTTAATTGAATTATTTAAACGTGCATCATTAGATTCTACACCATTGGATAAAATTCCTAGTCTATCTATAACTTGATCATTGACAAGGATTGGTATGTTTTTATATATATAGTTGATATCATAAGTCAATTGAAGCTAGACCATCGTGGTGGAAAACCTGGAAGCACTGTTTGACAGCCGTTTCGTCCTATTGTGGGATCAGGTTTTCCTTGGTGGTCCTAGCCTCAATTAACTCATGGTTTCAACTATATATATAAAAAAAATTACTAAAAAAATCTCCACAGAAACCCCCCACCCCCTAATCATTCGTATTATCAAGGAGGANAAACAAGCCAACAAACAAACATGTACAGTGTTCACATTTTATGTATTCAATAATCAATTTATTTTGC ANAAATCTTTT ] [-] EMBL CD074698 [ CCTAATCATTCGTATTATCAAGGAGGAAAAACAAGCCAACAAACAAACATGTACAGTGTTCACATTTTATGTATTCAATAATCAATTTATTTTGCAAAAAATCTTTTTTTTTTGCTGCTCATTTTTCTTCTACCCTTTTTTTTGAACTGCCAAAAAATGTTCGTCTTTCATTACTAATTACTATCAGTAGTAAAGTGAATCTGTTTTTTTTTAAAATATTTCTATATTGAACTGTATCAATAAATCAAGGTTAAGAAACAATTGGGGGTTGGAGGGGAGGTGGAGTAGGGATTTCTCTATTTCTTTACATATAGTTTATAGAAATATATTTTATTACCCTATTACCATGATAGATTATATATGATGAGTGTATCCATCTCAAGGTTTATTTTTATTATTCTTATTATTGTAAATCTTATTTTGTTATAATTTTCATTAGAAATGAAGATTTTTATATTTTGTATTATATTGTATGTTCTAATATATTAGAACAAGACCTA ATGTAATTTGAATTTGATACCCAATT] [-] EMBL CD076644 [ CATTTTATGTATTCAATAATCAATTTATTTTGCAAAAAATCTTTTTTTTTTGCTGCTCATTTTTTTTTTACCCTTTTTTTTGAACTGCCAAAAAATGTTCGTCTTTCATTACTAATTACTATCAGTAGTAAAGTGAATTTGTTTTTTTTTAAAATATTTTTATATTGAACTGTATCAATAAATCAAGGTTAAGAAACAATTGGGGGTTGGAGGGGAGGTG ] [-] EMBL CD076643 [ TATAGAAATATATTTTATTACCCTATTACCATGATAGATTATATATGATGAGTGTATCCATTTCAAGGTTTATTTTTATTATTTTTATTATTGTAAATTTTATTTTGTTATAATTTTCATTAGAAATGAAGATTTTTATATTTTGTATTATATTGTATGTTTTAATATATTAGAACAAG GCTATATGTAATTTGAATTTGATACCCAATT] consensusID : consensus_8243#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [AGGGCTTCCAAGAGGATAAAGAAATCATGATATCCAATATGGAACAAAATGAAACGATGTTATCTCCGTATGCCACCCCGTCACATCATTCTCATCATCATCATCATTATCATCATAGTTACCAAGATCATAAAGAAATCATGACATCCAATATGGAAGACAGTGTAACAGAAGGAGAAGACGAAGAAAAGGAAGAATATGTTTTAGTTTATTTAATTGATTTTACACGTTGGGAATTAGTAACAAATTGTAATCAAATCAAAGATGAAAATTTTTTATATGGTTTAAATTATTTAATTGAATTATTTAAACGTGCATCATTAGATTCTACACCATTGGATAAAATTCCTAGTCTATCTATAACTTGATCATTGACAAGGATTGGTATGTTTTTATATATATAGTTGATATCATAAGTCAATTGAAGCTAGACCATCGTGGTGGAAAACCTGGAAGCACTGTTTGACAGCCGTTTCGTCCTATTGTGGGATCAGGTTTTCCTTGGTGGTCCTAGCCTCAATTAACTCATGGTTTCAACTATATATATAAAAAAAATTACTAAAAAAATCTCCACAGAAACCCCCCACCCCCTAATCATTCGTATTATCAAG] [+] EMBL CD083070 [AGGGCTTCCAAGAGGATAAAGAAATCATGATATCCAATATGGAACAAAATGAAACGATGTTATCTCCGTATGCCACCCCGTCACATCATTCTCATCATCATCATCATTATCATCATAGTTACCAAGATCATAAAGAAATCATGACATCCAATATGGAAGACAGTGTAACAGAAGGAGAAGACGAAGAAAAGGAAGAATATGTTTTAGTTTATTTAATTGATTTTACACGTTGGGAATTAGTAACAAATTGTAATCAAATCAAAGATGAAAATTTTTTATATGGTTTAAATTATTTAATTGAATTATTTAAACGTGCATCATTAGATTCTACACCATTGGATAAAATTCCTAGTCTATCTATAACTTGATCATTGACAAGGATTGGTATGTTTTTATATATATAGTTGATATCATAAGTCAATTGAAGCTAGACCATCGTGGTGGAAAACCTGGAAGCACTGTTTGACAGCCGTTTCGTCCTATTGTGGGATCAGGTTTTCCTTGGTGGTCCTAGCCTCAATTAACTCATGGTTTCAACTATATATATAAAAAAAATTACTAAAAAAATCTCCACAGAAACCCCCCACCCCCTAATCATTCGTATTATCAAG] consensusID : consensus_8243#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 229 fasta sequence [GTTTCATTTTGTTCCATATTGGATATCATGATTTCTTTATCCTCTTGGTAACTACTATTATGATGATGATGTAATGAAGGGGTGGTAGTAGTAGTAGTAGTAGAAGAAGAAGTGGTAGTAGTAGTAGGATGTGAAGATATCATCATTTCATTATTTAAAAAAATACTATCATATGCTAATAATAATGAACTATCATAGAAATGATAATAATTNTGATTTTCAAACCATT] [+] EMBL CD066324 [GTTTCATTTTGTTCCATATTGGATATCATGATTTCTTTATCCTCTTGGTAACTACTATTATGATGATGATGTAATGAAGGGGTGGTAGTAGTAGTAGTAGTAGAAGAAGAAGTGGTAGTAGTAGTAGGATGTGAAGATATCATCATTTCATTATTTAAAAAAATACTATCATATGCTAATAATAATGAACTATCATAGAAATGATAATAATTNTGATTTTCAAACCATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8243#0 GCCAANAATTCGGCACGAGGCCNAAATCATGATATCCAATATGGAACAAAATGAAACGAT 60 consensus_8243#1 --AGGGCTTCCAAGAGGATAAAGAAATCATGATATCCAATATGGAACAAAATGAAACGAT 58 consensus_8243#2 -----------------------------------------------------GTTTCAT 7 ** consensus_8243#0 GTTATCTCCGTATGCCACCCCGTCACATCATTCTCATCATCATCATCATTATCATAATAG 120 consensus_8243#1 GTTATCTCCGTATGCCACCCCGTCACATCATTCTCATCATCATCATCATTATCATCATAG 118 consensus_8243#2 TTTGT-TCCATATTGGATATCATGATTTCTTTATCCTCTTGGTAACTACTATTATGATGA 66 ** * *** *** * * * * ** ** ** ** * * * * *** ** ** consensus_8243#0 TTACCAAGATCATAAAGAAATCATGACATCCAATATGGAAGACAGTGTAACAGAAGGAGA 180 consensus_8243#1 TTACCAAGATCATAAAGAAATCATGACATCCAATATGGAAGACAGTGTAACAGAAGGAGA 178 consensus_8243#2 TGAT-GTAATGAAGGGGTGGTAGTAGTAGTAGTAGTAGAAGAAGAAGTGGTAGTAGTAGT 125 * * ** * * * * * * ***** ** ** ** ** consensus_8243#0 AGACGAAGAAAAGGAAGAATATGTTTTAGTTTATTTAATTGATTTTACACGTTGGGAATT 240 consensus_8243#1 AGACGAAGAAAAGGAAGAATATGTTTTAGTTTATTTAATTGATTTTACACGTTGGGAATT 238 consensus_8243#2 AGGATGTGAAGAT-ATCATCATTTCATTATTTAAAAAAATACTATCATATGCTAA----T 180 ** *** * * * ** * * **** ** * * * * * * * * consensus_8243#0 AGTAACAAATTGTAATCAAATCAAAGATGAAAATTTTTTATATGGTTTAAATTATTTAAT 300 consensus_8243#1 AGTAACAAATTGTAATCAAATCAAAGATGAAAATTTTTTATATGGTTTAAATTATTTAAT 298 consensus_8243#2 AATAATGAACTATCAT------AGAAATGATAATAATTNTGATT-TTCAAACCATT---- 229 * *** ** * * ** * * **** *** ** ** ** *** *** consensus_8243#0 TGAATTATTTAAACGTGCATCATTAGATTCTACACCATTGGATAAAATTCCTAGTCTATC 360 consensus_8243#1 TGAATTATTTAAACGTGCATCATTAGATTCTACACCATTGGATAAAATTCCTAGTCTATC 358 consensus_8243#2 ------------------------------------------------------------ consensus_8243#0 TATAACTTGATCATTGACAAGGATTGGTATGTTTTTATATATATAGTTGATATCATAAGT 420 consensus_8243#1 TATAACTTGATCATTGACAAGGATTGGTATGTTTTTATATATATAGTTGATATCATAAGT 418 consensus_8243#2 ------------------------------------------------------------ consensus_8243#0 CAATTGAAGCTAGACCATCGTGGTGGAAAACCTGGAAGCACTGTTTGACAGCCGTTTCGT 480 consensus_8243#1 CAATTGAAGCTAGACCATCGTGGTGGAAAACCTGGAAGCACTGTTTGACAGCCGTTTCGT 478 consensus_8243#2 ------------------------------------------------------------ consensus_8243#0 CCTATTGTGGGATCAGGTTTTCCTTGGTGGTCCTAGCCTCAATTAACTCATGGTTTCAAC 540 consensus_8243#1 CCTATTGTGGGATCAGGTTTTCCTTGGTGGTCCTAGCCTCAATTAACTCATGGTTTCAAC 538 consensus_8243#2 ------------------------------------------------------------ consensus_8243#0 TATATATATAAAAAAAATTACTAAAAAAATCTCCACAGAAACCCCCCACCCCCTAATCAT 600 consensus_8243#1 TATATATATAAAAAAAATTACTAAAAAAATCTCCACAGAAACCCCCCACCCCCTAATCAT 598 consensus_8243#2 ------------------------------------------------------------ consensus_8243#0 TCGTATTATCAAGGAGGANAAACAAGCCAACAAACAAACATGTACAGTGTTCACATTTTA 660 consensus_8243#1 TCGTATTATCAAG----------------------------------------------- 611 consensus_8243#2 ------------------------------------------------------------ consensus_8243#0 TGTATTCAATAATCAATTTATTTTGCAAAAAATCTTTTTTTTTTGCTGCTCATTTTTCTT 720 consensus_8243#1 ------------------------------------------------------------ consensus_8243#2 ------------------------------------------------------------ consensus_8243#0 CTACCCTTTTTTTTGAACTGCCAAAAAATGTTCGTCTTTCATTACTAATTACTATCAGTA 780 consensus_8243#1 ------------------------------------------------------------ consensus_8243#2 ------------------------------------------------------------ consensus_8243#0 GTAAAGTGAATCTGTTTTTTTTTAAAATATTTCTATATTGAACTGTATCAATAAATCAAG 840 consensus_8243#1 ------------------------------------------------------------ consensus_8243#2 ------------------------------------------------------------ consensus_8243#0 GTTAAGAAACAATTGGGGGTTGGAGGGGAGGTGGAGTAGGGATTTCTCTATTTCTTTACA 900 consensus_8243#1 ------------------------------------------------------------ consensus_8243#2 ------------------------------------------------------------ consensus_8243#0 TATAGTTTATAGAAATATATTTTATTACCCTATTACCATGATAGATTATATATGATGAGT 960 consensus_8243#1 ------------------------------------------------------------ consensus_8243#2 ------------------------------------------------------------ consensus_8243#0 GTATCCATCTCAAGGTTTATTTTTATTATTCTTATTATTGTAAATCTTATTTTGTTATAA 1020 consensus_8243#1 ------------------------------------------------------------ consensus_8243#2 ------------------------------------------------------------ consensus_8243#0 TTTTCATTAGAAATGAAGATTTTTATATTTTGTATTATATTGTATGTTCTAATATATTAG 1080 consensus_8243#1 ------------------------------------------------------------ consensus_8243#2 ------------------------------------------------------------ consensus_8243#0 AACAAGACCTAATGTAATTTGAATTTGATACCCAATT 1117 consensus_8243#1 ------------------------------------- consensus_8243#2 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||