cluster # 8247

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Schistosoma mansoni
cluster # 8247 cluster # 8247 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8247#0 length = 843 sequences # 5

consensus_8247#1 length = 395 sequences # 1

consensusID : consensus_8247#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 843
fasta sequence

                              [TCAGCTCAACCAGGATCATTTCAATTCAGTCCTCAATGGATTAGGGAATTATCAGATGATGCATTTAACTCTAGAAGACAGTCGAGCCGCAGTCCAACCGAAGGTCGCGTTTCCAGCAAATCCCCCAGCCTGTTCTCAAACTTCGTCCAGAAACATTCTAATTGTTCTGTTCCCGGGGATAAACGAAAAGACATGGTTGTAGGCAAAGTCTCGAAACTTGTGTGGCCAGGTGACACCATTTATGCTACTTCTGTAGCTGAAACGGACAGTCAAGGACAATCTTCCCGAGAGGTGATCAAACAGTATTCACACAGCATACAGTTTTCTGACTCCATATATGGCCAAAAATCGAATGCCAACCAACTCATCAATCCCGCTAGCCATTGTGTTGATACCAGCAAACAAGCAATACAGTGGACTCAGAAGTCCTCTTTGATTTCTCCCCCCGAACCGTGTTGGCAACTCCACTCGGACTCAGGCATTGAAACGTCCGTTAACAAAATACCAGATACAATAAACCTGAATACAGCAGGTCATTCTTTACCTTCATCGAGTGCCCGACCTCTTGAAGTGCAGCATGTAGGGGCTTCTCTCTTATCAGGAAATTCGTCAGTTGTAAGCAACGCAACGTTGAATATAAATTCTATTTTACCTAATGAAGGTATCCCAGTTCCCCGATCAGATCCATATAGTCAGAATAATACTGATTCATATAATAATCAGAGTAAACGGGCTGTCAGAGCTTACTATGGAATCAATGATGCAGACAAGAACATAGATTCCAGTGTGAACTCAAACGCTATATGGATGCAGCAGCATATATGGTCAAAGTCTGTTCCACAG]

[+] EMBL CD122086             [TCAGCTCAACCAGGATCATTTCAATTCAGTCCTCAATGGATTAGGGAATTATCAGATGATGCATTTAACTCTAGAAGACAGTCGAGCCGCAGTCCAACCGAAGGTCGCGTTTCCAGCAAATCCCCCAGCCTGTTCTCAAACTTCGTCCAGAAACATTCTAATTGTTCTGTTCCCGGGGATAAACGAAAAGACATGGTTGTAGGCAAAGTCTCGAAACTTGTGTGGCCAGGTGACACCATTTATGCTACTTCTGTAGCTGAAACGGACAGTCAAGGACAATCTTCCCGAGAGGTGATCAAACAGTATTCACACAGCATACAGTTTTCTGACTCCATATATGGCCAAAAATCGAATGCCAACCAACTCATCAATCCCGCTAGCCATTGTGTTGATACCAGCAAACAAGCAATACAGTGGACTCAGAAGTCCTCTTTGATTTCTCCCCCCGAACCGTGTTGGCAACTCCACTCGGACTCAGGCATTGAAACGTCCGTTAACAAAATACCAGATACAATAAACCTGAATACAGCAGGTCATTCTTTACCTTCATCGAGTGCCCGACCT                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD062721             [                           AGTCCTCAATGGATTAGGGAATTATCAGATGATTCTTTTAACTCTAGAAGACAGTCGAGCCGCAGTGGAACCGAAGGTCGCGTTTCCAGCAAATCCCCCAGCCTGTTCTCAAACTTCGTCCAGAAACATTCTAATTGTTCTGTTCCCGGGGATAAACGAAAAGACATGGTTGTAGGCAAAGTCTCGAAACTTGTGTGGCCAGGTGACACCATTTATGCTACTTCTGTAGCTGAAACGGACAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD145160             [                                                                                     GCCGCAGTCCAACCGAAGGTCGCGTTTCCAGCAAATCCCCCAGCCTGTTCTCAAACTTCGTCCAGAAACATTCTAATTGTTCTGTTCCCGGGGATAAACGAAAAGACATGGTTGCAGGCAAAGTCTCGAAACTTGTGTGGCCAGGTGACACCATTTATGCTACTTCTGTAGCTGAAACGGACAGTCAAGGACAATCTTCCCGAGAGGTGATCAAACAGTATTCACACAGCATACAGTTTTCTGACTCCATATATGGCCAAAAATCGAATGCCAACCAACTCATCAATCCCGCTAGCCATTGTGTTGATACCAGCAAACAAGCAATACAGTGGACTCAGAAGTCCTCTTTGATTTCTCCCCCCGAACCGTGTTGGCAACTCCACTCGGACTCAGGAATTGAAACGTCCGTTAACAAAATACCAGATACAATAAACCTGAATACGGCAGGTCATTCTTTACCTTCATCGAGTGCCCGACCTCTTGAAGTGCAGCATGTAn                                                                                                                                                                                                                                                                    ]
[-] EMBL CD145355             [                                                                                                                                                                                                                                                                                                 AGGTGATCANACAGTATTCACACAGCATACAGTTTTCTGACTCCATATATGGCCAAAAATCGAATGCCAACCAACTCATCAATCCCGCTAGCCATTGTGTTGATACCAGCAAACAAGCAATACAGTGGACTCAGAAGTCCTCTTTGATTTCTCCCCCCGAACCGTGTTGGCAACCCCACTCGGACTCAGGCATTGAAACGTCCGTTAACAAAATACCAGATACAATAAACCTGAATACAGCAGGTCATTCTTTACCTTCATCGAGTGCCCGACCTCTTGAAGTGCAGCATGTAGGGGCTTCTCTCTTATCAGGAAATTCGTCAGTTGTAAGCAACGCAACGTTGAATATAAATTCTATTTTACCTAATGAAGGTATCCCAGTTCCCCGATCAGATCCATATAGTCAGAATAATACTGATTCATATAATAATCAGAGTAAACGGGCTGTCAGAGCTTACTATGGAATCAATGATGCAGACAAGAACATAGATTCCAGTGTGAACTCAAACGCTATATGGATGCAGCAGCATATATGGTCAAAGTCTGTTCCACAG]
[-] EMBL CD145354             [                                                                                                                                                                                                                                                                                                                                GTTTTCTGACTCCATATATGGCCAAAAATCGAATGCCAACCAACTCATCAATCCCGCTAGCCATTGTGTTGATACCAGCAAACAAGCAATACAGTGGACTCAGAAGTCCTCTTTGATTTCTCCCCCCGAACCGTGTTGGCAACTCCACTCGGACTCAGGCATTGAAACGTCCGTTAACAAAATACCAGATACAATAAACCTGAATACAGCAGGTCATTCTTTACCTTCATCGAGTGCCCGACCTCTTGAAGTGCAGCATGTAGGGGCTTCTCTCTTATCAGGAAATTCGTCAGTTGTAAGCAACGCAACGTTGAATATAAATTCTATTTTACCTAATGATGGTATCCCAGTTCCCCGATCAGATCCATATAGTCAGAATAATACTGATTCATATAATAATCAGAGTAAACGGGCTGTCAGTGCTTATTATGGAATCAATGATGCAGACAAGAACTTAGATTCCAGTGTGAACTCAAACGCTATATGGATGCAGCAGCATATATGGTCAAAGTCTGTTCCACAG]




>consensus_8247#0
TCAGCTCAACCAGGATCATTTCAATTCAGTCCTCAATGGATTAGGGAATTATCAGATGAT
GCATTTAACTCTAGAAGACAGTCGAGCCGCAGTCCAACCGAAGGTCGCGTTTCCAGCAAA
TCCCCCAGCCTGTTCTCAAACTTCGTCCAGAAACATTCTAATTGTTCTGTTCCCGGGGAT
AAACGAAAAGACATGGTTGTAGGCAAAGTCTCGAAACTTGTGTGGCCAGGTGACACCATT
TATGCTACTTCTGTAGCTGAAACGGACAGTCAAGGACAATCTTCCCGAGAGGTGATCAAA
CAGTATTCACACAGCATACAGTTTTCTGACTCCATATATGGCCAAAAATCGAATGCCAAC
CAACTCATCAATCCCGCTAGCCATTGTGTTGATACCAGCAAACAAGCAATACAGTGGACT
CAGAAGTCCTCTTTGATTTCTCCCCCCGAACCGTGTTGGCAACTCCACTCGGACTCAGGC
ATTGAAACGTCCGTTAACAAAATACCAGATACAATAAACCTGAATACAGCAGGTCATTCT
TTACCTTCATCGAGTGCCCGACCTCTTGAAGTGCAGCATGTAGGGGCTTCTCTCTTATCA
GGAAATTCGTCAGTTGTAAGCAACGCAACGTTGAATATAAATTCTATTTTACCTAATGAA
GGTATCCCAGTTCCCCGATCAGATCCATATAGTCAGAATAATACTGATTCATATAATAAT
CAGAGTAAACGGGCTGTCAGAGCTTACTATGGAATCAATGATGCAGACAAGAACATAGAT
TCCAGTGTGAACTCAAACGCTATATGGATGCAGCAGCATATATGGTCAAAGTCTGTTCCA
CAG

consensusID : consensus_8247#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence

                              [GATTTCTCCCCCCGAACCGTGTTGGCAACTCCACTCGGACTCAGGCATTGTAACGTCCGTTAACAAAATACCAGATACAATAAACCTTGATACCGCAGGGTAATCTTTACCTTCATTGAAGGCCCGACCTCTTGAAATGCAACATGTAGGGGCTTCTCTCTTATTGAGGAATTCGGTCAGTGTAAACCACACCACCTTGAATATAAATTCTATTTTACCTAATGAGAGGGTTCCAATTTCCCCGATCAGATCCATATAGTCAGAATAATACTGATTCATATAATAATCACAGTAAACGGGCTGTCAGTGCTTATTATGGAATCAATGATGCAGACAAGAACTTAGATTCTAGTGTGAACTCAAACGCTATATGGATGCAGCAGCATATATGGTCA]

[+] EMBL CD067470             [GATTTCTCCCCCCGAACCGTGTTGGCAACTCCACTCGGACTCAGGCATTGTAACGTCCGTTAACAAAATACCAGATACAATAAACCTTGATACCGCAGGGTAATCTTTACCTTCATTGAAGGCCCGACCTCTTGAAATGCAACATGTAGGGGCTTCTCTCTTATTGAGGAATTCGGTCAGTGTAAACCACACCACCTTGAATATAAATTCTATTTTACCTAATGAGAGGGTTCCAATTTCCCCGATCAGATCCATATAGTCAGAATAATACTGATTCATATAATAATCACAGTAAACGGGCTGTCAGTGCTTATTATGGAATCAATGATGCAGACAAGAACTTAGATTCTAGTGTGAACTCAAACGCTATATGGATGCAGCAGCATATATGGTCA]




>consensus_8247#1
GATTTCTCCCCCCGAACCGTGTTGGCAACTCCACTCGGACTCAGGCATTGTAACGTCCGT
TAACAAAATACCAGATACAATAAACCTTGATACCGCAGGGTAATCTTTACCTTCATTGAA
GGCCCGACCTCTTGAAATGCAACATGTAGGGGCTTCTCTCTTATTGAGGAATTCGGTCAG
TGTAAACCACACCACCTTGAATATAAATTCTATTTTACCTAATGAGAGGGTTCCAATTTC
CCCGATCAGATCCATATAGTCAGAATAATACTGATTCATATAATAATCACAGTAAACGGG
CTGTCAGTGCTTATTATGGAATCAATGATGCAGACAAGAACTTAGATTCTAGTGTGAACT
CAAACGCTATATGGATGCAGCAGCATATATGGTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8247#0      TCAGCTCAACCAGGATCATTTCAATTCAGTCCTCAATGGATTAGGGAATTATCAGATGAT 60
consensus_8247#1      ------------------------------------------------------------
                                                                                  

consensus_8247#0      GCATTTAACTCTAGAAGACAGTCGAGCCGCAGTCCAACCGAAGGTCGCGTTTCCAGCAAA 120
consensus_8247#1      ------------------------------------------------------------
                                                                                  

consensus_8247#0      TCCCCCAGCCTGTTCTCAAACTTCGTCCAGAAACATTCTAATTGTTCTGTTCCCGGGGAT 180
consensus_8247#1      ------------------------------------------------------------
                                                                                  

consensus_8247#0      AAACGAAAAGACATGGTTGTAGGCAAAGTCTCGAAACTTGTGTGGCCAGGTGACACCATT 240
consensus_8247#1      ------------------------------------------------------------
                                                                                  

consensus_8247#0      TATGCTACTTCTGTAGCTGAAACGGACAGTCAAGGACAATCTTCCCGAGAGGTGATCAAA 300
consensus_8247#1      ------------------------------------------------------------
                                                                                  

consensus_8247#0      CAGTATTCACACAGCATACAGTTTTCTGACTCCATATATGGCCAAAAATCGAATGCCAAC 360
consensus_8247#1      ------------------------------------------------------------
                                                                                  

consensus_8247#0      CAACTCATCAATCCCGCTAGCCATTGTGTTGATACCAGCAAACAAGCAATACAGTGGACT 420
consensus_8247#1      ------------------------------------------------------------
                                                                                  

consensus_8247#0      CAGAAGTCCTCTTTGATTTCTCCCCCCGAACCGTGTTGGCAACTCCACTCGGACTCAGGC 480
consensus_8247#1      --------------GATTTCTCCCCCCGAACCGTGTTGGCAACTCCACTCGGACTCAGGC 46
                                    **********************************************

consensus_8247#0      ATTGAAACGTCCGTTAACAAAATACCAGATACAATAAACCTGAATACAGCAGGTCATTCT 540
consensus_8247#1      ATTGTAACGTCCGTTAACAAAATACCAGATACAATAAACCTTGATACCGCAGGGTAATCT 106
                      **** ************************************  **** *****  * ***

consensus_8247#0      TTACCTTCATCGAGTGCCCGACCTCTTGAAGTGCAGCATGTAGGGGCTTCTCTCTTATCA 600
consensus_8247#1      TTACCTTCATTGAAGGCCCGACCTCTTGAAATGCAACATGTAGGGGCTTCTCTCTTATTG 166
                      ********** **  *************** **** **********************  

consensus_8247#0      GGAAATTCGTCAGTTGTAAGCAACGCAACGTTGAATATAAATTCTATTTTACCTAATGAA 660
consensus_8247#1      AGGAATTCGGTCAGTGTAAACCACACCACCTTGAATATAAATTCTATTTTACCTAATGAG 226
                       * ******     ***** * ** * ** ***************************** 

consensus_8247#0      GGTATCCCAGTT-CCCCGATCAGATCCATATAGTCAGAATAATACTGATTCATATAATAA 719
consensus_8247#1      AGGGTTCCAATTTCCCCGATCAGATCCATATAGTCAGAATAATACTGATTCATATAATAA 286
                       *  * *** ** ***********************************************

consensus_8247#0      TCAGAGTAAACGGGCTGTCAGAGCTTACTATGGAATCAATGATGCAGACAAGAACATAGA 779
consensus_8247#1      TCACAGTAAACGGGCTGTCAGTGCTTATTATGGAATCAATGATGCAGACAAGAACTTAGA 346
                      *** ***************** ***** *************************** ****

consensus_8247#0      TTCCAGTGTGAACTCAAACGCTATATGGATGCAGCAGCATATATGGTCAAAGTCTGTTCC 839
consensus_8247#1      TTCTAGTGTGAACTCAAACGCTATATGGATGCAGCAGCATATATGGTCA----------- 395
                      *** *********************************************           

consensus_8247#0      ACAG 843
consensus_8247#1      ----