cluster # 8249

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Schistosoma mansoni
cluster # 8249 cluster # 8249 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8249#0 length = 535 sequences # 2

consensus_8249#1 length = 483 sequences # 4

consensusID : consensus_8249#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 535
fasta sequence

                              [TCGAGGCAAGAATCGGCACGAGGCAAAAAATCCCAAAAAAGAAACACTAC-GACATGTCTTTCGGATCTTTTCTATTCAGTCGTATCTCAGCAAAGAAGGGTGGGCCAGATGCGTCCAAAGAAGTTCATACAAAAGTTGAAGCGGGAGAATGGATTATTTGATAACTATCTACAACAGGATGCTCATGAATTTCTTAACTATCTTCTCAACAAAATAGCTGATATAATAAGAGCCGAACAACAACCAATCGGAGTAGATGCTGAAGATCCTAGTGATTGTGAAATGACTGATGTTTCCGAAAGTAATAGAAAGCATAGTGGCCGTAACTGGATTCATGAGATCTTTCAGGGAAGTTTAACCAATGAAACTAGGTGCCTTAACTGTGATAATGTTCGCACGAAAGAGGAAAATTTCCTCGATCTATCAGTCGATGTCGGAGAAAATGTTGATATATCTTATTGTCTCCGTTGCTTTTCCGATACTGAAACAATGCGTTCAGACAATAAGTATTACTGTGAATTTTGTCGTTGCAAGC]

[+] EMBL CD083420             [TCGAGGCAAGAATCGGCACGAGGCAAAAAATCCCAAAAAAGAAACACTAC GACATGTCTTTCGGATCTTTTCTATTCAGTCGTATCTCAGCAAAGAAGGGTGGGCCAGATGCGTCCAAAGAAGTTCATACAAAAGTTGAAGCGGGAGAATGGATTATTTGATAACTATCTACAACAGGATGCTCATGAATTTCTTAACTATCTTCTCAACAAAATAGCTGATATAATAAGAGCCGAACAACAACCAATCGGAGTAGATGCTGAAGATCCTAGTGATTGTGAAATGACTGATGTTTCCGAAAGTAATAGAAAGCATAGTGGCCGTAACTGGATTCATGAGATCTTTCAGGGAAGTTTAACCAATGAAACTAGGTGCCTTAACTGTGATAATGTTCGCACGAAAGAGGAAAATTTCCTCGATCTATCAGTCGATGTCGGAGAAAATGTTGATATATCTTATTGTCTCCGTTGCTTTTCCGATACTGAAACAATGCGTTCAGACAATAAGTATTACTGTGAATTTTGTCGTTGCAAGC]
[+] EMBL CD120847             [                                          AACACTACTGACATGTCTTCCGGATCTTTTCTATTCAGTCGTATCTCAGCAAAGAAGGGTGGGCCAGATGCGTCCAAAGAAGTTCATACAAAAGTTGAAGCGGGAGAATGGATTATTTGATAACTATCTACAACAGGATGCTCATGAATTTCTTAACTATCTTCTCAACAAAATAGCTGATATAATAAGAGCCGAACAACAACCAATCGGAGTAGATGCTGAAGATCCTAGTGATTGTGAAATGACTGATGTTTCCGAAAGTAATAGAGAGCATAGTGGCCGTAACTGGATTCATGAGATCTTTCAGGGA                                                                                                                                                                                        ]




>consensus_8249#0
TCGAGGCAAGAATCGGCACGAGGCAAAAAATCCCAAAAAAGAAACACTACGACATGTCTT
TCGGATCTTTTCTATTCAGTCGTATCTCAGCAAAGAAGGGTGGGCCAGATGCGTCCAAAG
AAGTTCATACAAAAGTTGAAGCGGGAGAATGGATTATTTGATAACTATCTACAACAGGAT
GCTCATGAATTTCTTAACTATCTTCTCAACAAAATAGCTGATATAATAAGAGCCGAACAA
CAACCAATCGGAGTAGATGCTGAAGATCCTAGTGATTGTGAAATGACTGATGTTTCCGAA
AGTAATAGAAAGCATAGTGGCCGTAACTGGATTCATGAGATCTTTCAGGGAAGTTTAACC
AATGAAACTAGGTGCCTTAACTGTGATAATGTTCGCACGAAAGAGGAAAATTTCCTCGAT
CTATCAGTCGATGTCGGAGAAAATGTTGATATATCTTATTGTCTCCGTTGCTTTTCCGAT
ACTGAAACAATGCGTTCAGACAATAAGTATTACTGTGAATTTTGTCGTTGCAAGC

consensusID : consensus_8249#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 483
fasta sequence

                              [GAAGAGGTTTTTGCGCTACAACTCTATTCTGTTTTAAGATCATGATGATACTTCATTATGAGGTTTCTGGAGTCTTTCCTTCGTATTAATTGCTTAAAAATGGGGCTCAGTAGTTCTCAGTTAGAGAAAGAGATTGCCGGTGACCAACTTCTCAGTGGAGAGCGATATTTTGGGCTGGTGAACTTCGGAAATACATGCTACTGCAATTCAGTAATACAGGCTTTGTTCTTCTGTAAGCCATTTCGAGACAAGGTTTTACAATACAATGATCGAGCAAAAAATCCCAAAAAAGAAACACTACTGACATGTCTTTCGGATCTTTTCTATTCAGTCGTATCTCAGCAAAGAAGGGTGGGCCAGATGCGTCCAAAGAAGTTCATACAAAAGTTGAAGCGGGAGAATGGATTATTTGATAACTATCTACAACAGGATGCTCATGAATTTCTTAACTATCTTCTCAACAAAATAGCTGATATAATAAGA]

[+] EMBL CD122897             [GAAGAGGTTTTTGCGCTACAACTCTATTCTGTTTTAAGATCATGATGATACTTCATTATGAGGTTTCTGGAGTCTTTCCTTCGTATTAATTGCTTAAAAATGGGGCTCAGTAGTTCTCAGTTAGAGAAAGAGATTGCCGGTGACCAACTTCTCAGTGGAGAGCGATATTTTGGGCTGGTGGACTTCGGAAATACATGCTACTGCAATTCAGTAATACAGGCTTTGTTCTTCTGTAAGCCATTTCGAGACAAGGTTTTACAATACAATGATCGAGCAAAAAATCCCAAAAAAGAAACACTACTGACATGTCTTTCGGATCTTTTCTATTCAGTCGTATCTCAACAAAGAAGGGTGGGCCAGATGCGTCCAAAGAAGTTCATACAAAAGTTGAAGCGGGAGAATGGATTATTTGATAACTATCTACAACAGGATGCTCATGAATTTCTTAACTATTTTTTCAACAAAATAGCTGATATAATAAG ]
[+] EMBL CD123069             [GAAGAGGTTTTTGCGCTACAACTCTATTCTGTTTTAAGATCATGATGATACTTCATTATGAGGTTTCTGGAGTCTTTCCTTCGTATTAATTGCTTAAAAATGGGGCTCAGTAGTTCTCAGTTAGAGAAAGAGATTGCCGGTGACCAACTTCTCAGTGGAGAGCGATATTTTGGGCTGGTGAACTTCGGAAATACATGCTACTGCAATTCAGTAATACAGGCTTTGTTCTTCTGTAAGCCATTTCGAGACAAGGTTTTACAATACAATGATCGAGCAAAAAATCCCAAAAAAGAAACACTACTGACATGTCTTTCGGATCTTTTCTATTCAGTCGTATCTCAGCAAAGAAGGGTGGGCCAGATGCGTCCAAAGGAGTTCATACAAAAGTTGAAGCGGGAGAATGGATTATTTGATAACTATCTACAACACGATGCTCATGAATTTCTTAACTATCTTCTCAACAA                   ]
[-] EMBL CD122742             [ AAGAGGTTTTTGCGCTACAACTCTATTCTGTTTTAAGATCATGATGATACTTCATTATGAGGTTTCTGGAGTCTTTCCTTCGTATTAATTGCTTAAAAATGGGGCTCAGTAGTTCTCAGCTAGAGAAAGAGATTGCCGGTGACCAACTTCTCAGTGGAGAGCGATATTTTGGGCTGGTGAACTTCGGAAATACATGCTACTGCAATTCAGTAATACAGGCTTTGTTCTTCTGTAAGCCATTTCGAGACAAGGTTTTACAATACAGTGATCGAGCAAAAAATCCCAAAAAAGAAACACTACTGACATGTCTTTCGGATCTTTTCTATTCAGTCGTATCTCAGCAAAGAAGGGTGGGCCAGATGCGTCCAAAGAAGTTCATACAAAAGTTGAAGCGGGAGAATGGATTATTTGATAACTATCTACAACAGGATGCTCATGAATTTCTTAACTATCTTCTCAACAAAATAGCTGATATAATAAGA]
[+] EMBL CD156734             [                                                                       GTCTTTCCTTCGTATTAATTGCTTAAAAATGGGGCTCAGTAGTTCTCAGTTAGAGAAAGAGATTGCCGGTGACCAACTTCTCAGTGGAGAGCGATATTTTGGGCTGGTGAACTTCGGAAATACATGCTACTGCAATTCAGTAATACAGGCTTTGTTCTTCTGTAAGCCATTTCGAGACAAGGTTTTACAATACAATGATCGAGCAAAAAATCCCAAAAAAGAAACACTACTGACATGTCTTTCGGATCTTT                                                                                                                                                                 ]




>consensus_8249#1
GAAGAGGTTTTTGCGCTACAACTCTATTCTGTTTTAAGATCATGATGATACTTCATTATG
AGGTTTCTGGAGTCTTTCCTTCGTATTAATTGCTTAAAAATGGGGCTCAGTAGTTCTCAG
TTAGAGAAAGAGATTGCCGGTGACCAACTTCTCAGTGGAGAGCGATATTTTGGGCTGGTG
AACTTCGGAAATACATGCTACTGCAATTCAGTAATACAGGCTTTGTTCTTCTGTAAGCCA
TTTCGAGACAAGGTTTTACAATACAATGATCGAGCAAAAAATCCCAAAAAAGAAACACTA
CTGACATGTCTTTCGGATCTTTTCTATTCAGTCGTATCTCAGCAAAGAAGGGTGGGCCAG
ATGCGTCCAAAGAAGTTCATACAAAAGTTGAAGCGGGAGAATGGATTATTTGATAACTAT
CTACAACAGGATGCTCATGAATTTCTTAACTATCTTCTCAACAAAATAGCTGATATAATA
AGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8249#0      TCGAGGCAAGAATCGGCACGAGGCAAAAA-ATCCCAAAAAAGAAACACTACGACATGTCT 59
consensus_8249#1      -----GAAGAGGTTTTTGCGCTACAACTCTATTCTGTTTTAAGATCATGATGATACTTCA 55
                           * *    *     **   ***    ** *      *  * **  * ** *  ** 

consensus_8249#0      TTCGGATCTTTTCTATTCAGTCGTATCTCAGCAAAGAAGGGTGGGCCAGATGCGTCCAAA 119
consensus_8249#1      TTATGAGGTTTCTGG---AGTCTTTCCTTCGTATTAATTGCTTAA--AAATGGGGCTCAG 110
                      **  **  ***       **** *  **  * *   *  * *     * *** * *  * 

consensus_8249#0      GAAGT-TCATACAAAAGTTGAAGCGG--GAGAATGGATTATTTGATAACTATCTACAACA 176
consensus_8249#1      TAGTTCTCAGTTAGAGAAAGAGATTGCCGGTGACCAACTTCTCAGTGGAGAGCGATATTT 170
                       *  * ***   * *    **    *  *   *   * *  *   *    * * * *   

consensus_8249#0      GGATGCTCATGAATTTCTTAACTATCTTCTCAACAAAATAGCTGATATAATAAGAGCCGA 236
consensus_8249#1      TGG-GCTGGTGAACTTCGGAAATACATGCTACTGCAATTCAGTAATACAGGCTTTGTTCT 229
                       *  ***  **** ***  ** **  * **     ** *   * *** *      *    

consensus_8249#0      ACAACAA-CCAATCGGAGTAGATGCTGAAGATCCTAGTGATTGTGAAATGACTGATGTTT 295
consensus_8249#1      TCTGTAAGCCATTTCGAGACAAGGTTTTACAATACAATGATCGAGCAA------AAAATC 283
                       *   ** *** *  ***   * * *  * *    * **** * * **      *   * 

consensus_8249#0      CCGAAAGTAATAGAAAGCATAGTGGC-CGTAACTGGATTCATGAGATCTTTCAGGGAAGT 354
consensus_8249#1      CCAAAAA----AGAAACACTACTGACATGTCTTTCGGATCTTTTC-TATTCAGTCGTATC 338
                      ** ***     *****   ** ** *  **   * *  ** *    * **     * *  

consensus_8249#0      TTAACCAATGAAACTAGGTGCCTTAACTGTGATAATGTTCGCACGAAAGAGGAAAATTTC 414
consensus_8249#1      TCAGCAAAGAAGGGTGGGCCAGATGCGTCCAAAGAAGTTCATACAAAAGTTGAAG--CGG 396
                      * * * **  *   * **     *   *   *  * ****  ** ****  ***      

consensus_8249#0      CTCGATCTATCAGTCGATGTCGGAGAAAATGTTGATATATCTTATTGTCTCCGTTGCTTT 474
consensus_8249#1      GAGAATGGATTATTTGATAACTATCTACAACAGGATGCTCATGAATTTCTTAACTATCTT 456
                          **  ** * * ***  *     * *    ***     * * * ***    *   **

consensus_8249#0      TCCGATACTGAAACAATGCGTTCAGACAATAAGTATTACTGTGAATTTTGTCGTTGCAAG 534
consensus_8249#1      CTCAACA---AAATA----GCTGATATAATAAGA-------------------------- 483
                        * * *   *** *    * * * * ******                           

consensus_8249#0      C 535
consensus_8249#1      -