These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8257#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 759 fasta sequence [ATAACATAGTCCGTAGGCTTTCTGTCTCTACTACATAACTGATTTTTGAATCTGAATCTTTGTTTTTCCGGACAGAGCGAAACTAGTCCTTGAAAGTGGTTCTAAGATCCTAACGTTCGTATCCCGTTTTCGCTGGTAATGTACTTGGTCCTGCAGAGTTGTCAAACTCGAGTAAGATTTGTTGTTTACAAGCAGTTTAACTCGAATTGGTTTCAGGGGCTCCATAACAATCTTTAGAAGATTGTCAACACCCGTATGCTTCCATAGGGAATTCTACTGGAATGATCGATGCGATAATAATGAAGAGAAATTCGAAAAAGTACTCATAGCAAATCGAGGTGAAATCGCCTGCCGTATAATCCAGTCATGTAAACGATTAGGGATTCGCACTGTCGCTATTCACAGCGAAGCGGATTATTTATCTCGTTTTGTGTCCATGGCGGACGAAGCAGTATGTGTTGGTCCATCTCCAAGCGCCCAATCTTATCTAAATATCTCTGCTATTTTAAACGCTGTGAAGTCGACGAGTGCCCAAGCAGTACACCCTGGTTATGGTTTTTTGTCGGAAAACACTCTTTTTGCCGCGGAGTTAGAGAAAATGAATGTTGTCTTTCTTGGTCCTAATTCTAGAGCTATCAAAGCTATGGGAGATAAAATTGAGAGCAAACGAATTGCTAATCAAGCTAAAGTTAATTGTATCCCAGGTTATGATGGAGAAGTGGATGGCCCANATGAAGCTGCTAGGATTGCTGCTGAAAT] [+] EMBL CD191578 [ATAACATAGTCCGTAGGCTTTCTGTCTCTACTACATAACTGATTTTTGAATCTGAATCTTTGTTTTTCCGGACAGAGCGAAACTAGTCCTTGAAAGTGGTTCTAAGATCCTAACGTTCGTATCCCGTTTTCGCTGGTAATGTACTTGGTCCTGCAGAGTTGTCAAACTCGAGTAAGATTTGTTGTTTACAAGCAGTTTTTCTCAGATTGGTTTCAGGGGCTCCATAACAATCTTTAGAAGATTGTCAACACCCGTATGCTTCCATAGGGAATTCTACTGGAATGATCGATGCGATAATAATGAAGAGAAATTCGAAAAAGTACTCATAGCAAATCGAGGTGAAATCGCCTGCCGTATAATCCAGTCATGTAAACGATTAGGGATTCGCACTGTCGCTATTCACAGCGAAGCGGATTATTTATCTCGTTTTGTGT CATGGCGGAC ] [+] EMBL CD191499 [ATAACATAGTCCGTAGGCTTTCTGTCTCTACTACATAACTGATTTTTGAATCTGAATCTTTGTTTTTCCGGACAGAGCGAAACTAGTCCTTGAAAGTGGTTCTAAGATCCTAACGTTCGTATCCCGTTTTCGCTGGTAATGTACTTGGTCCTGCAGAGTTGTCAAACTCGAGTAAGATTTGTTGTTTACAAGCAGTTTTTCTCAGATTGGTTTCAGGGGCTCCATAACAATCTTTAGAAGATTGTCAACACCCGTATGCTTCCATGGGGAATTCTACTGGAATGATCGATGCGATAATAATGAAGAGAGATTCGAAAAAGTACTCATAGCAAATCGAGGTGAAATCGCCTGCCGTATAATCCAGTCATGTAAACGATTAGGGATTCGCACTGTCGCTATTCACAGCGAAGCGGATTATTTAT ] [+] EMBL CD095144 [ AACTCGAATTGGTTTCAGGGGCTCCATAACAATCTTTAGAAGATTGTCAACACCCGTATGCTTCCATAGGGAATTCTACTGGAATGATCGATGCGATAATAATGAAGAGAAATTCGAAAAAGTACTCATAGCAAATCGAGGTGAAATCGCCTGCCGTATAATCCAGTCATGTAAACGATTAGGGATTCGCACTGTCGCTATTCACAGCGAAGCGGATTATTTATCTCGTTTTGTGTCCATGGCGGACGAAGCAGTATGTGTTGGTCCATCTCCAAGCGCCCAATCTTATCTAAATATCTCTGCTATTTTAAACGCTGTGAAGTCGACGAGTGCCCAAGCAGTACACCCTGGTTATGGTTTTTTGTCGGAAAACACTCTTTTTGCCGCGGAGTTAGAGAAAATGAATGTTGTCTTTCTTGGTCCTAATTCTAGAGCTATCAAAGCTATGGGAGATAAAATTGAGAGCAAACGAATTGCTAATCAAGCTAAAGTTAATTGTATCCCAGGTTATGATGGAGAAGTGGATGGCCCANATGAAGCTGCTAGGATTGCTGCTGAAAT] [+] EMBL CD120921 [ agttgtcaAACTCGAATTGGTTTCAGGGGCTCCATAACAATCTTTAGAAGATTGTCAACACCCGTATGCTTCCATAGGGAATTCTACTGGAATGATCGATGCGATAATAATGAAGAGAAATTCGAAAAAGTACTCATAGCAAATCGAGGTGAAATCGCCTGCCGTATAATCCAGTCATGTAAACGATTAGGGATTCGCACTGTCGCTATTCACAGCGAAGCGGATTATTTATCTCGTTTTGTGTCCATGGCGGACGAAGCAGTATGTGTT ] [+] EMBL CD121027 [ agttgtcaAACTCGAATTGGTTTCAGGGGCTCCATAACAATCTTTAGAAGATTGTCAACACCCGTATGCTTCCATAGGGAATTCTACTGGAATGATCGATGCGATAATAATGAAGAGAAATTCGAAAAAGTACTCATAGCAAATCGAGGTGAAATCGCCTGCCGTATAATCCAGTCATGTAAACGATTAGGGATTCGCACTGTCGCTATTCACAGCGAAGCGGATTATTTATCTCGTTTTGTGTCCATGGCGGACGAAGCAGTATGTGTT ] consensusID : consensus_8257#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 317 fasta sequence [AGTTGTCAAACTCGAGTAAGATTTGTTGTTTACAAGCAGTTTTTCTCAGATTGGTTTCAGGGGCTCCATAACAATCTTTAGAAGATTGTCAACACCCGTATGCTTCCATAGGGAATTCTACTGGAATGATCGATGCGATAATAATGAAGAGGTAAATTAACAAAAAATTCGAAAAAGTACTCATAGCAAATCGAGGTGAAATCGCCTGCCGTATAATCCAGTCATGTAAACGATTAGGGATTCGCACTGTCGCTATTCACAGCGAAGCGGATTATTTATCTCGTTTTGTGTCCATGGCGGACGAAGCAGTATGTGTT] [+] EMBL CD170702 [AGTTGTCAAACTCGAGTAAGATTTGTTGTTTACAAGCAGTTTTTCTCAGATTGGTTTCAGGGGCTCCATAACAATCTTTAGAAGATTGTCAACACCCGTATGCTTCCATAGGGAATTCTACTGGAATGATCGATGCGATAATAATGAAGAGGTAAATTAACAAAAAATTCGAAAAAGTACTCATAGCAAATCGAGGTGAAATCGCCTGCCGTATAATCCAGTCATGTAAACGATTAGGGATTCGCACTGTCGCTATTCACAGCGAAGCGGATTATTTATCTCGTTTTGTGTCCATGGCGGACGAAGCAGTATGTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8257#0 ATAACATAGTCCGTAGGCTTTCTGTCTCTACTACATAACTGATTTTTGAATCTGAATCTT 60 consensus_8257#1 ------------------------------------------------------------ consensus_8257#0 TGTTTTTCCGGACAGAGCGAAACTAGTCCTTGAAAGTGGTTCTAAGATCCTAACGTTCGT 120 consensus_8257#1 ------------------------------------------------------------ consensus_8257#0 ATCCCGTTTTCGCTGGTAATGTACTTGGTCCTGCAGAGTTGTCAAACTCGAGTAAGATTT 180 consensus_8257#1 ------------------------------------AGTTGTCAAACTCGAGTAAGATTT 24 ************************ consensus_8257#0 GTTGTTTACAAGCAGTTTAACTCGAATTGGTTTCAGGGGCTCCATAACAATCTTTAGAAG 240 consensus_8257#1 GTTGTTTACAAGCAGTTTTTCTCAGATTGGTTTCAGGGGCTCCATAACAATCTTTAGAAG 84 ****************** *** *********************************** consensus_8257#0 ATTGTCAACACCCGTATGCTTCCATAGGGAATTCTACTGGAATGATCGATGCGATAATAA 300 consensus_8257#1 ATTGTCAACACCCGTATGCTTCCATAGGGAATTCTACTGGAATGATCGATGCGATAATAA 144 ************************************************************ consensus_8257#0 TGAAGAG-------------AAATTCGAAAAAGTACTCATAGCAAATCGAGGTGAAATCG 347 consensus_8257#1 TGAAGAGGTAAATTAACAAAAAATTCGAAAAAGTACTCATAGCAAATCGAGGTGAAATCG 204 ******* **************************************** consensus_8257#0 CCTGCCGTATAATCCAGTCATGTAAACGATTAGGGATTCGCACTGTCGCTATTCACAGCG 407 consensus_8257#1 CCTGCCGTATAATCCAGTCATGTAAACGATTAGGGATTCGCACTGTCGCTATTCACAGCG 264 ************************************************************ consensus_8257#0 AAGCGGATTATTTATCTCGTTTTGTGTCCATGGCGGACGAAGCAGTATGTGTTGGTCCAT 467 consensus_8257#1 AAGCGGATTATTTATCTCGTTTTGTGTCCATGGCGGACGAAGCAGTATGTGTT------- 317 ***************************************************** consensus_8257#0 CTCCAAGCGCCCAATCTTATCTAAATATCTCTGCTATTTTAAACGCTGTGAAGTCGACGA 527 consensus_8257#1 ------------------------------------------------------------ consensus_8257#0 GTGCCCAAGCAGTACACCCTGGTTATGGTTTTTTGTCGGAAAACACTCTTTTTGCCGCGG 587 consensus_8257#1 ------------------------------------------------------------ consensus_8257#0 AGTTAGAGAAAATGAATGTTGTCTTTCTTGGTCCTAATTCTAGAGCTATCAAAGCTATGG 647 consensus_8257#1 ------------------------------------------------------------ consensus_8257#0 GAGATAAAATTGAGAGCAAACGAATTGCTAATCAAGCTAAAGTTAATTGTATCCCAGGTT 707 consensus_8257#1 ------------------------------------------------------------ consensus_8257#0 ATGATGGAGAAGTGGATGGCCCANATGAAGCTGCTAGGATTGCTGCTGAAAT 759 consensus_8257#1 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||