These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8266#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1098 fasta sequence [CGNAGGCCATTAATTCGGCACGAGGGTCAACGATGGACTGCCGAACGTATTCATCAGAAAGACTTGGTTGCTATTCTGCGCCTACTAGTTGCTATTGCTCGTCAATTTAAACCAGAAATGCGTTTTCAACCAGGTATTTTTCTTACCGTCATAATCGCTCGCAAATTAAATGGTAAATTGGAGTATCGTTACGAAAGGGAATACATCACTGAATTCACAGAAACATTATCTGCCAGCAGTCCTCTTGACGCCATATCAGAACATCATATGGTTTTGCAAGCAGTTCTTACTTTTATCAATACACATTTGGAACAAGTTGGCTTTCATGTTAGTGATCTCTCCAAAGATTTTAGAGATGGTGTCTTACTTATTCTATTAATGGGTCTTATTGACGGTTATTTTGTACCATTTCATGCATATCATCCAACACCAACAACAGAAGAATTGTGTATATCAAATATTAAACTAGCCTTTGAACTTATTCAAGCAGCTGGTATGGTTGAACCTCCAGCAAAACCTGAAGAAATTGTTGCAGGCGATAGCAATGCTGTATTACGTGTATTGTATGGTATCTATTCATATTGTGCACATATGGAGGATGAACAACGTCGGTATGAAATAAATAATATTCGGGAAAATGATGAATATTATGGTAATAACCAAAAACCTGTTATACAGCATGATGCAATAAATTTATCATGAAGTATATATAACTGTGATATTTGTCAGCTGTTTTCTGTGATGCTAACTTTTTATAAATTACCATGGGGTTACCATATGAGGTTACTACTGGAGTGACTTATTTTTAATAAGTGACAGCTAGTTACTTTCTTTTCAGAAACAATAAGTACTCCATTATATCATTTATCTCTCTCTTTCTCTCTTCTGCA-AA-ATATATGTTCTGTAGCCTGAAATGTTTTACACCATTAAACATTCTGATAT-AGTTTTGGAG-TATCATATTATTTTTCTGCGGT--ACTGTTTACTTGCTATGATACGTNCCTTGACTACTGANAGGAATGATATTTTTCTCCTACATGANNTTGTGGGATGATAATTTTTGCCTCGGGGTGTTCTCTGATGATTCTTTACAATAGAGGG] [+] EMBL CD081623 [CGNAGGCCATTAATTCGGCACGAGGGTCAACGATGGACTGCCGAACGTATTCATCAGAAAGACTTGGTTGCTATTCTGCGCCTACTAGTTGCTATTGCTCGTCAATTTAAACCAGAAATGCGTTTTCAACCAGGTATTTTTCTTACCGTCATAATCGCTCGCAAATTAAATGGTAAATTGGAGTATCGTTACGAAAGGGAATACATCACTGAATTCACAGAAACATTATCTGCCAGCAGTCCTCTTGACGCCATATCAGAACATCATATGGTTTTGCAAGCAGTTCTTACTTTTATCAATACACATTTGGAACAAGTTGGCTTTCATGTTAGTGATCTCTCCAAAGATTTTAGAGATGGTGTCTTACTTATTCTATTAATGGGTCTTATTGACGGTTATTTTGTACCATTTCATGCATATCATCCAACACCAACAACAGAAGAATTGTGTATATCAAATATTAAACTAGCCTTTGAACTTATTCAAGCAGCTGGTATGGTTGAACCTCCAGCAAAACCTGAAGAAATTGTTGCAGGCGATAGCAATGCTGTATTACGTGTATTGTATGGTATCTATTCATATTGTGCACATATGGAGGATGAACAACGTCGGTATGAAATAAATAATATTCGGGAAAATGATGAATATTATGGTAATAACCAAAAACCTGTTATACAGCATGATGCAATAAATTTATCATGAAGTATATATAACTGTGATATTTGTCAGCTGTTTTCTGTGATGCTAACTTTTTATAAATTACCATGGGGTTACCATATGAGGTTACTACTGGAGTGACTTATTTTTAAATAGTGACAGCTAGTTACTTTCTTTTCAGAAACAAATAGTACTCCATTATATCATTTATCTCTCTCTTTCTCTCTTCTGCA AA ATATATGTTCTGTAGCCTGAAATG TTTACACCATT AACATTCTGATAT AGTTTTGGAG TATCATATTATTTTTCTGCGGT ACTGTTTACTTGCTATGATACGTNCCTTGACTACTGANAGGAATGATATTTTTCTCCTACATGANNTTGTGGGATGATAATTTTTGCCTCGGGGTGTTCTCTGATGATTCTTTACAATAGAGGG] [+] EMBL CD078638 [ TGATCTCTCCAAAGATTTTAGAGATGGTGTCTTACTTATTCTATTAATGGGTCTTATTGACGGTTATTTTGTACCATTTCATGCATATCATCCAACACCAACAACAGAAGAATTGTGTATATCAAATATTAAACTAGCCTTTGAACTTATTCAAGCAGCTGGTATGGTTGAACCTCCAGCAAAACCTGAAGAAATTGTTGCAGGCGATAGCAATGCTGTATTACGTGTATTGTATGGTATCTATTCATATTGTGCACATATGGAGGATGAACAACGTCGGTATGAAATAAATAATATTCGGGAAAATGATGAATATTATGGTAATAACCAAAAACCTGTTATACAGCATGATGCAATAAATTTATCATGAAGTATATATAACTGTGATATTTGTCAGCTGTTTTCTGTGATGCTAACTTTTTATAAATTACCATGGGGTTACCATATGAGGTTACTACTGGAGTGACTTATTTTTAATAAGTGACAGCTAGTTACTTTCTTTTCAGAAACAATAAGTACTCCATTATATCATTTATCTCTCTCTTTCTCTCTTCTGCANAT ATATATGTTCTGTACCCTGAAATGTTTTACACCATTAAACATTCTGATAT ] [+] EMBL CD084310 [ GCAAAACCTGAAGAAATTGTTGCAGGCGATAGCAATGCTGTATTACGTGTATTGTATGGTATCTATTCATATTGTGCACATATGGAGGATGAACAACGTCGGTATGAAATAAATAATATTCGGGAAAATGATGAATATTATGGTAATAACCAAAAACCTGTTATACAGCATGATGCAATAAATTTATCATGAAGTATATATAACTGTGATATCTGTCAGCTGTTTTCTGTGATGCTAACTTTTTATAAATTACCATGGGGTTACCATATGAGGTTACTACTGGAGTGACTTATTTTTAATAAGTGACAGCTAGTTACTTTCTTTTCAGAAACAATAAGTACTCCATTATATCATTTATCTCTCTCTTTCTCTCTTCTGCA AATATATATGTTCTGTAGCCTGAAATGTTTTACACCATTAAACATTCTGATATNAGTTTAGTAGTTATC TATTATTTTTCTGCGGTTAACTGT ] consensusID : consensus_8266#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 621 fasta sequence [TTGTTGCAGGCGATAGCAATGCTGTATTACGTGTATTGTATGGTATCTATTCATATTGTGCACATATGGAGGATGAACAACGTCGGTATGAAATAAATAATATTCGGGAAAATGATGAATATTATGGTAATAACCAAAAACCTGTTATACAGCATGATGCAATAAATTTATCATGAAGTATATATAACTGTGATATTTGTCAGCTGTTTTCTGTGATGCTAACTTTTTATAAATTACCATGGGGTTACCATATGAGGTTACTACTGGAGTGACTTATTTTTAATAAGTGACAGCTAGTTACTTTCTTTTCAGAAACAATAAGTACTCCATTATATCATTTATCTCTCTCTTTCTCTCTTCTGCAAATATATATGTTCTGTAGCCTGAAATGTTTTACACCATTAAACATTCTGATATTAGTTTTGTAGTTATCTATATTATTTTTCTGCGGTTAACTGTTTTACTTTGCTTATGATCACGTTCCTTTTGACTTACTGGTAGTGTAATTGATTATTTTTTTCTTCCTACTATGTAGTTTTGTTGTGTATTGTATAAGTTTTCTGCGCTCGTGGGGTTGTATCTCACTGAATGTATTCATTACTACCAAATAGAATGGGGTTT] [-] EMBL CD075445 [TTGTTGCAGGCGATAGCAATGCTGTATTACGTGTATTGTATGGTATCTATTCATATTGTGCACATATGGAGGATGAACAACGTCGGTATGAAATAAATAATATTCGGGAAAATGATGAATATTATGGTAATAACCAAAAACCTGTTATACAGCATGATGCAATAAATTTATCATGAAGTATATATAACTGTGATATTTGTCAGCTGTTTTCTGTGATGCTAACTTTTTATAAATTACCATGGGGTTACCATATGAGGTTACTACTGGAGTGACTTATTTTTAATAAGTGACAGCTAGTTACTTTCTTTTCAGAAACAATAAGTACTCCATTATATCATTTATCTCTCTCTTTCTCTCTTCTGCAAATATATATGTTCTGTAGCCTGAAATGTTTTACACCATTAAACATTCTGATATTAGTTTTGTAGTTATCTATATTATTTTTCTGCGGTTAACTGTTTTACTTTGCTTATGATCACGTTCCTTTTGACTTACTGGTAGTGTAATTGATTATTTTTTTCTTCCTACTATGTAGTTTTGTTGTGTATTGTATAAGTTTTCTGCGCTCGTGGGGTTGTATCTCACTGAATGTATTCATTACTACCAAATAGAATGGGGTTT] [-] EMBL CD073102 [ ACAACGTCGGTATGAAATAAATAATATTCGGGAAAATGATGAATATTATGGTAATAACCAAAAACCTGTTATACAGCATGATGCAATAAATTTATCATGAAGTATATATAACTGTGATATTTGTCAGCTGTTTTCTGTGATGCTAACTTTTTATAAATTACCATGGGGTTACCATATGAGGTTACTACTGGAGTGACTTATTTTTAATAAGTGACAGCTAGTTACTTTCTTTTCAGAAACAATAAGTACTCCATTATATCATTTATCTCTCTCTTTCTCTCTTCTGCAAATATATATGTTCTGTAGCCTGAAATGTTTTACACCATTAAACATTCTGATATTAGTTTTGTAGTTATCTATATTATTTTTCTGCGGTTAACTGTTTTACTTTGCTTATGATCACGTTCCTTTTGACTTACTGGTAGTGTAATTGATTATTTTTTTCTTCCTACTATGTAGTTTTGTTGTGTATTGTATAAGTTTTCTGCGCTCGTGGGGTTGTATCTCACTGAATGTATTCATTACTACCAAATAGAATGGGGTTT] consensusID : consensus_8266#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence [ACAAATTATNGGCATGGATTAACAACGAACTATCAGACNATCGAATTCTCGTGAGAGATATTCAAGAAGACTTATATGATGGTCAACTTCTGCAAAAGTTAGTTGAAAAACTAGCGAAGATAGAGCTAGATCATCCTGAGTTAACTCAGTCTGAAATCGGACAGCTTCAACGCTTGCGAGGTGTATTGCAAACTGTCAACGAAATACTTCATGTATCAGAAAGTTGGGCCAGTCAACGATGGACCGCCGAACGTATTCATCAGAAAGACTTGGTTGCTATTCTGCGCCTACTAGTTGCTATTGCTCGTCAATTTAAACCAGAAATGCGTTTTCAACCAGGTATT] [-] EMBL CD138254 [ACAAATTATNGGCATGGATTAACAACGAACTATCAGACNATCGAATTCTCGTGAGAGATATTCAAGAAGACTTATATGATGGTCAACTTCTGCAAAAGTTAGTTGAAAAACTAGCGAAGATAGAGCTAGATCATCCTGAGTTAACTCAGTCTGAAATCGGACAGCTTCAACGCTTGCGAGGTGTATTGCAAACTGTCAACGAAATACTTCATGTATCAGAAAGTTGGGCCAGTCAACGATGGACCGCCGAACGTATTCATCAGAAAGACTTGGTTGCTATTCTGCGCCTACTAGTTGCTATTGCTCGTCAATTTAAACCAGAAATGCGTTTTCAACCAGGTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8266#0 CGNAGGCCATTAATTCGGCACGAGGGTCAACGATGGACTGCCGAACGTATTCATCAGAAA 60 consensus_8266#1 ------------------------------------------------------------ consensus_8266#2 ------------------------------------------------------------ consensus_8266#0 GACTTGGTTGCTATTCTGCGCCTACTAGTTGCTATTGCTCGTCAATTTAAACCAGAAATG 120 consensus_8266#1 ------------------------------------------------------------ consensus_8266#2 ------------------------------------------------------------ consensus_8266#0 CGTTTTCAACCAGGTATTTTTCTTACCGTCATAATCGCTCGCAAATTAAATGGTAAATTG 180 consensus_8266#1 ------------------------------------------------------------ consensus_8266#2 ------------------------------------------------------------ consensus_8266#0 GAGTATCGTTACGAAAGGGAATACATCACTGAATTCACAGAAACATTATCTGCCAGCAGT 240 consensus_8266#1 ------------------------------------------------------------ consensus_8266#2 ------------------------------------------------------------ consensus_8266#0 CCTCTTGACGCCATATCAGAACATCATATGGTTTTGCAAGCAGTTCTTACTTTTATCAAT 300 consensus_8266#1 ------------------------------------------------------------ consensus_8266#2 ------------------------------------------------------------ consensus_8266#0 ACACATTTGGAACAAGTTGGCTTTCATGTTAGTGATCTCTCCAAAGATTTTAGAGATGGT 360 consensus_8266#1 ------------------------------------------------------------ consensus_8266#2 ------------------------------------------------------------ consensus_8266#0 GTCTTACTTATTCTATTAATGGGTCTTATTGACGGTTATTTTGTACCATTTCATGCATAT 420 consensus_8266#1 ------------------------------------------------------------ consensus_8266#2 ------------------------------------------------------------ consensus_8266#0 CATCCAACACCAACAACAGAAGAATTGTGTATATCAAATATTAAACTAGCCTTTGAACTT 480 consensus_8266#1 ------------------------------------------------------------ consensus_8266#2 ------------------------------------------------------------ consensus_8266#0 ATTCAAGCAGCTGGTATGGTTGAACCTCCAGCAAAACCTGAAGAAATTGTTGCAGGCGAT 540 consensus_8266#1 ----------------------------------------------TTGTTGCAGGCGAT 14 consensus_8266#2 ------------------------------------------------------------ consensus_8266#0 AGCAATGCTGTATTACGTGTATTGTATGGTATCTATTCATATTGTGCACATATGGAGGAT 600 consensus_8266#1 AGCAATGCTGTATTACGTGTATTGTATGGTATCTATTCATATTGTGCACATATGGAGGAT 74 consensus_8266#2 ---------------------------ACAAATTATNGGCATGGATTAACAACGAACTAT 33 * *** ** * * * * * ** consensus_8266#0 GAACAACGTCGGTATGAAATAAATAATATTCGGGAAAATGATGAATATTATGGTAA---T 657 consensus_8266#1 GAACAACGTCGGTATGAAATAAATAATATTCGGGAAAATGATGAATATTATGGTAA---T 131 consensus_8266#2 CAG-ACNATCGAATTCTCGTGAGAGATATTCAAGAA---GACTTATATGATGGTCAACTT 89 * * *** * * * ****** *** ** **** ***** * * consensus_8266#0 AACCAAAAACCTGTTATACAGCATGATGCAATAAATTTATCATGAAGTATATATAACTGT 717 consensus_8266#1 AACCAAAAACCTGTTATACAGCATGATGCAATAAATTTATCATGAAGTATATATAACTGT 191 consensus_8266#2 CTGCAAAAGTTAGTTGAAAAACTAGCGAAGATAGAGCTAG-ATCATCCTGAGTTAACTCA 148 ***** *** * * * * *** * ** ** * * ***** consensus_8266#0 GATATTTGTCAGCTGTTTTCTGTGAT-GCTAACTTT-TTATAAATTACCATGGGGTTACC 775 consensus_8266#1 GATATTTGTCAGCTGTTTTCTGTGAT-GCTAACTTT-TTATAAATTACCATGGGGTTACC 249 consensus_8266#2 GTCTGAAATCGGACAGCTTCAACGCTTGCGAGGTGTATTGCAAACTGTCAACGAAATACT 208 * ** * *** * * ** * * * ** *** * ** * *** consensus_8266#0 ATATGAGGTTACTACTGGAGTGACTTATTTTTAATAAGTGACAGCTAGTTACTTTCTTTT 835 consensus_8266#1 ATATGAGGTTACTACTGGAGTGACTTATTTTTAATAAGTGACAGCTAGTTACTTTCTTTT 309 consensus_8266#2 TCATG----TATCAGAAAGTTGGGCCAGTC--AACGATGGACCGCCGA--ACGTATTCAT 260 *** ** * ** * * ** * *** ** ** * * * consensus_8266#0 CAGAAACAATAAGTACTCCATTATATCATTTATCTCTCTCTTTCTCTCTTCTGCAAA-AT 894 consensus_8266#1 CAGAAACAATAAGTACTCCATTATATCATTTATCTCTCTCTTTCTCTCTTCTGCAAATAT 369 consensus_8266#2 CAGAAAGACTTGGT-TGCTATTCTG-CGCCTACTAGTTGCTATTGCTCGTC----AATTT 314 ****** * * ** * *** * * ** * ** * *** ** ** * consensus_8266#0 ATATGTTCTGTAGCCTGAAATGTTTTACACCATTAAACATTCTGATAT-AGTTTTGGAGT 953 consensus_8266#1 ATATGTTCTGTAGCCTGAAATGTTTTACACCATTAAACATTCTGATATTAGTTTTGTAGT 429 consensus_8266#2 A----------AACCAGAAATGCGTT-TTCAACCAGGTATT------------------- 344 * * ** ****** ** * * * *** consensus_8266#0 -ATC-ATATTATTTTTCTGCGGT--ACTGTTT-ACTTG--CTATGAT-ACGTNCCTT--G 1003 consensus_8266#1 TATCTATATTATTTTTCTGCGGTTAACTGTTTTACTTTGCTTATGATCACGTTCCTTTTG 489 consensus_8266#2 ------------------------------------------------------------ consensus_8266#0 ACT-ACTGANAG---GAATGAT-ATTTTTCTC------CTACATGANNTTGTGGGATG-- 1050 consensus_8266#1 ACTTACTGGTAGTGTAATTGATTATTTTTTTCTTCCTACTATGTAGTTTTGTTGTGTATT 549 consensus_8266#2 ------------------------------------------------------------ consensus_8266#0 --ATAA--TTTTTGC-CTCGGGGTGTTCTCT-------GATG-ATTCTTTAC-----AAT 1092 consensus_8266#1 GTATAAGTTTTCTGCGCTCGTGGGGTTGTATCTCACTGAATGTATTCATTACTACCAAAT 609 consensus_8266#2 ------------------------------------------------------------ consensus_8266#0 AGAGGG------ 1098 consensus_8266#1 AGAATGGGGTTT 621 consensus_8266#2 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Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||