cluster # 8273

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8273 cluster # 8273 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8273#0 length = 597 sequences # 5

consensus_8273#1 length = 533 sequences # 1

consensusID : consensus_8273#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 597
fasta sequence

                              [CTTTTATAATAATAATAATAATAATAATAATAATAATGATAACAATATCCTTCAATAGATATATCATC-TTACTG-ATCCTTATACATTATACTTGTACAAAACCACATTTAGAAACCGTGAGTCGAAGAGATACAGAACATTTTGCTGATGATCCAAATCGACATGATATAGAATTTGATCATAATGCATTTCTAGGTGAAGAGACTGCTAAAGAATTTTCACAACTTACACCAAATGAAAGTGAAGAACAATTAAAGATTATTATACGAAAAATTGATAAAAATAATGATGAAAGAATAACTGAATTAGAATTAAAATCTTGGATTGAATATGTAGCTAAAAAATCAAAACAAAATAGTACTGATCGTCAATGGAATGATATAAATCCAACTAATCAACCTGTTATTAAATGGACAGAATATCTAATGAGGACATATGGACCAGAAGAAGAACGATTAAAAGATACAGCTACATCTGAATCATATAAAAAAGCTGTGCAACATGATCGGCGACGATGGATTGCTGCTGATTTAGATGAAGATGATAGTTTATATAAGACTGAGTTCACTGATTNTGTACATCCTGAAGACAGGCCAA]

[+] EMBL AI977203             [CTTTTATAATAATAATAATAATAATAATAATAATAATGATAACAATATCCTTCAATAGATATATCATC TTACTG ATCCTTATACATTATACTTGTACAAAACCACATTTAGAAACCGTGAGTCGAAGAGATACAGAACATTTTGCTGATGATCCAAATCGACATGATATAGAATTTGATCATAATGCATTTCTAGGTGAAGAGACTGCTAAAGAATTTTCACAACTTACACCAAATGAAAGTGAAGAACAATTAAAGATTATTATACGAAAAATTGATAAAAATAATGATGAAAGAATAACTGAAATAGAATTAAAATCTTGGATTGAATATGTAGCTAAAAAATCAAAACAAAATAGTACTGATCGTCAATGGAATGATATAAATCCAACTAATCAACCTGTTATTAAATGGACAGAATATCTAATGAGGACATATGGACCAGAAGAAGAACGATTAAAAGATACAGCTACATCTGAATCATATAAAAAAGCTGTGCAACATGATCGGCGACGATGGATTGCTGCTGATTTAGATGAAGATGATAGTTTATATA                                          ]
[+] EMBL AI975599             [                       ATAATAATAATAATGATAACAATATCCTTCAATAGATATATCATC TTACTG ATCCTTATACATTATACTTGTACAAAACCACATTTAGAAACCGTGAGTCGAAGAGATACAGAACATTTTGCTGATGATCCAAATCGACATGATATAGAATTTGATCATAATGCATTTCTAGGTGAAGAGACTGCTAAAGAATTTTCACAACTTACACCAAATGAAAGTGAAGAACAATTAAAGATTATTATACGAAAAATTGATAAAAATAATGATGAATGAATAACTGAAATAGAATTAAAATCTTGGATTGAATATGTAGCTAAAAAATCAAAACAAAATAGTACTGATCGTCAATGGAATGATATAAATCCAACTAATCAACCTGTTATTAAATGGACAGAATATCTAATGAGGACATATGGACCAGAAGAAGAACGATTAAAAGATACAGCTACATC                                                                                                                          ]
[+] EMBL BF936106             [                                                  TTCAATAGATATATCATC TTACTG ATCCTTATACATTATACTTGTACAAAACCACATTTAGAAACCGTGAGTCGAAGAGATACAGAACATTTTGCTGATGATCCAAATCGACATGATATAGAATTTGATCATAATGCATTTCTAGGTGAAGAGACTGCTAAAGAATTTTCACAACTTACACCAAATGAAAGTGAAGAACAATTAAAGATTATTATACGAAAAATTGATAAAAATAATGATGAAAGAATAACTGAATTAGAATTAAAATCTTGGATTGAATATGTAGCTAAAAAATCAAAACAAAATAGTACTGATCGTCAATGGAATGATATAAATCCAACTAATCAACCTGTTATTAAATGGACAGAATATCTAATGAGGACATATGGACCAGAAGAAGAACGATTAAAAGATACAGCTACATCTGAATCATATAAAAAAGCTGTGCAACATGATCGGCGACAATGGATTGCTGCTGATTTAGATGAAGATGA                                                     ]
[+] EMBL SM768                [                                                         GATATATCATCTTTACTGNATCCTTATACATTATNCTTGTACAAAACCACATTTAGAAACCGTGAGTCGAAGAGATACAGAACATGNTGNTGATGATCCAAATCGACATGATATAGAATTTGATCATAATGCATTTCTAGGTGANGAGACTGCTAAAGAATNNNCACAACTCACACCAAATGAAAGTGAAGAACAATTAANGATTATTATACGAAANATTGATAAAAATAATGATGAAAGAATAACTGAATTAGAATTAnn                                                                                                                                                                                                                                                                                         ]
[+] EMBL AI977461             [                                                                                                                  AACCGTGAGTCGAAGAGATACAGAACATTTTGCTGATGATCCAAATCGACATGATATAGAATTTGATCATAATGCATTTCTAGGTGAAGAGACTGCTAAAGAATTTTCACAACTTACACCAAATGAAAGTGAAGAACAATTAAAGATTATTATACGAAAAATTGATAAAAATAATGATGAAAGAATAACTGAATTAGAATTAAAATCTTGGATTGAATATGTAGCTAAAAAATCAAAACAAAATAGTACTGATCGTCAATGGAATGATATAAATCCAACTAATCAACCTGTTATTAAATGGACAGAATATCTAATGAGGACATATGGACCAGAAGAAGAACGATTAAAAGATACAGCTACATCTGAATCATATAAAAAAGCTGTGCAACATGATCGGCGACGATGGATTGCTGCTGATTTAGATGAAGATGATAGTTTAAATAAGACTGAGTTCACTGATTNTGTACATCCTGAAGACAGGCCAA]




>consensus_8273#0
CTTTTATAATAATAATAATAATAATAATAATAATAATGATAACAATATCCTTCAATAGAT
ATATCATCTTACTGATCCTTATACATTATACTTGTACAAAACCACATTTAGAAACCGTGA
GTCGAAGAGATACAGAACATTTTGCTGATGATCCAAATCGACATGATATAGAATTTGATC
ATAATGCATTTCTAGGTGAAGAGACTGCTAAAGAATTTTCACAACTTACACCAAATGAAA
GTGAAGAACAATTAAAGATTATTATACGAAAAATTGATAAAAATAATGATGAAAGAATAA
CTGAATTAGAATTAAAATCTTGGATTGAATATGTAGCTAAAAAATCAAAACAAAATAGTA
CTGATCGTCAATGGAATGATATAAATCCAACTAATCAACCTGTTATTAAATGGACAGAAT
ATCTAATGAGGACATATGGACCAGAAGAAGAACGATTAAAAGATACAGCTACATCTGAAT
CATATAAAAAAGCTGTGCAACATGATCGGCGACGATGGATTGCTGCTGATTTAGATGAAG
ATGATAGTTTATATAAGACTGAGTTCACTGATTNTGTACATCCTGAAGACAGGCCAA

consensusID : consensus_8273#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 533
fasta sequence

                              [CCCTCAGGCCAGAATTCGGCACGAGGATTGCTTGTATACACTTTTTAACCCTTTTATAATAATAATAATAATGATAACAATATCCTTCAATAGATATATCATCTTACTGATCCTTATCATTATACTTGTACAAAACCACATTTAGAAACCGTGAGTCGAAGAGATACAGAACATTTTGCTGATGATCCAAATCGACATGATATAGAATTTGATCATAATGCATTTCTAGGTGAAGAGACTGCTAAAGAATTTTCACAACTTACACCAAATGAAAGTGAAGAACAATTAAAGATTATTATACGAAAAATTGATAAAAATAATGATGAAAGAATAACTGAATTGGAATTAAAATCTTGGATTGAATATGTAGCTAAAAAATCTAAACAAAATAGTACTGATCGTCAATGGAATGATATAAATCCAACTAATCAACCTGTTATTAAATGGACAGAATATCTAATGAGGACATATGGACCAGAAGAAGAACGATTAAAAGATACAGCTACATCTGAATCATATAAAAAAGCTGTGCA]

[+] EMBL CD083309             [CCCTCAGGCCAGAATTCGGCACGAGGATTGCTTGTATACACTTTTTAACCCTTTTATAATAATAATAATAATGATAACAATATCCTTCAATAGATATATCATCTTACTGATCCTTATCATTATACTTGTACAAAACCACATTTAGAAACCGTGAGTCGAAGAGATACAGAACATTTTGCTGATGATCCAAATCGACATGATATAGAATTTGATCATAATGCATTTCTAGGTGAAGAGACTGCTAAAGAATTTTCACAACTTACACCAAATGAAAGTGAAGAACAATTAAAGATTATTATACGAAAAATTGATAAAAATAATGATGAAAGAATAACTGAATTGGAATTAAAATCTTGGATTGAATATGTAGCTAAAAAATCTAAACAAAATAGTACTGATCGTCAATGGAATGATATAAATCCAACTAATCAACCTGTTATTAAATGGACAGAATATCTAATGAGGACATATGGACCAGAAGAAGAACGATTAAAAGATACAGCTACATCTGAATCATATAAAAAAGCTGTGCA]




>consensus_8273#1
CCCTCAGGCCAGAATTCGGCACGAGGATTGCTTGTATACACTTTTTAACCCTTTTATAAT
AATAATAATAATGATAACAATATCCTTCAATAGATATATCATCTTACTGATCCTTATCAT
TATACTTGTACAAAACCACATTTAGAAACCGTGAGTCGAAGAGATACAGAACATTTTGCT
GATGATCCAAATCGACATGATATAGAATTTGATCATAATGCATTTCTAGGTGAAGAGACT
GCTAAAGAATTTTCACAACTTACACCAAATGAAAGTGAAGAACAATTAAAGATTATTATA
CGAAAAATTGATAAAAATAATGATGAAAGAATAACTGAATTGGAATTAAAATCTTGGATT
GAATATGTAGCTAAAAAATCTAAACAAAATAGTACTGATCGTCAATGGAATGATATAAAT
CCAACTAATCAACCTGTTATTAAATGGACAGAATATCTAATGAGGACATATGGACCAGAA
GAAGAACGATTAAAAGATACAGCTACATCTGAATCATATAAAAAAGCTGTGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8273#0      ------------------------------CTTTTATAATAATAATAA-----TAATAAT 25
consensus_8273#1      CCCTCAGGCCAGAATTCGGCACGAGGATTGCTTGTATACACTTTTTAACCCTTTTATAAT 60
                                                    *** ****    *  ***     * *****

consensus_8273#0      AATAATAATAATGATAACAATATCCTTCAATAGATATATCATCTTACTGATCCTTATACA 85
consensus_8273#1      AATAATAATAATGATAACAATATCCTTCAATAGATATATCATCTTACTGATCCTTAT-CA 119
                      ********************************************************* **

consensus_8273#0      TTATACTTGTACAAAACCACATTTAGAAACCGTGAGTCGAAGAGATACAGAACATTTTGC 145
consensus_8273#1      TTATACTTGTACAAAACCACATTTAGAAACCGTGAGTCGAAGAGATACAGAACATTTTGC 179
                      ************************************************************

consensus_8273#0      TGATGATCCAAATCGACATGATATAGAATTTGATCATAATGCATTTCTAGGTGAAGAGAC 205
consensus_8273#1      TGATGATCCAAATCGACATGATATAGAATTTGATCATAATGCATTTCTAGGTGAAGAGAC 239
                      ************************************************************

consensus_8273#0      TGCTAAAGAATTTTCACAACTTACACCAAATGAAAGTGAAGAACAATTAAAGATTATTAT 265
consensus_8273#1      TGCTAAAGAATTTTCACAACTTACACCAAATGAAAGTGAAGAACAATTAAAGATTATTAT 299
                      ************************************************************

consensus_8273#0      ACGAAAAATTGATAAAAATAATGATGAAAGAATAACTGAATTAGAATTAAAATCTTGGAT 325
consensus_8273#1      ACGAAAAATTGATAAAAATAATGATGAAAGAATAACTGAATTGGAATTAAAATCTTGGAT 359
                      ****************************************** *****************

consensus_8273#0      TGAATATGTAGCTAAAAAATCAAAACAAAATAGTACTGATCGTCAATGGAATGATATAAA 385
consensus_8273#1      TGAATATGTAGCTAAAAAATCTAAACAAAATAGTACTGATCGTCAATGGAATGATATAAA 419
                      ********************* **************************************

consensus_8273#0      TCCAACTAATCAACCTGTTATTAAATGGACAGAATATCTAATGAGGACATATGGACCAGA 445
consensus_8273#1      TCCAACTAATCAACCTGTTATTAAATGGACAGAATATCTAATGAGGACATATGGACCAGA 479
                      ************************************************************

consensus_8273#0      AGAAGAACGATTAAAAGATACAGCTACATCTGAATCATATAAAAAAGCTGTGCAACATGA 505
consensus_8273#1      AGAAGAACGATTAAAAGATACAGCTACATCTGAATCATATAAAAAAGCTGTGCA------ 533
                      ******************************************************      

consensus_8273#0      TCGGCGACGATGGATTGCTGCTGATTTAGATGAAGATGATAGTTTATATAAGACTGAGTT 565
consensus_8273#1      ------------------------------------------------------------
                                                                                  

consensus_8273#0      CACTGATTNTGTACATCCTGAAGACAGGCCAA 597
consensus_8273#1      --------------------------------