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Schistosoma mansoni
cluster # 8274 cluster # 8274       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8274#0 length = 880 sequences # 4  
consensus_8274#1 length = 680 sequences # 2  

consensusID : consensus_8274#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 880
fasta sequence
                              [TTTGGTGCTCTTAATGCGGATATTTTAGATCATCAACTAAATGATGAGTCAGTTGTTTCTGCAACAAGAGATAAGATAGAATCGGTTATCGATGAACTGTTGAGTAATGATGAACCTGAAGAAGATCCTGCTGATTGTTTAAGATTAAGTAAAATTTGCCGTCATCATCCTCCTGAGCATTATTTAAAATTAATTAAACGTTATTGTAGAGCAGGTGATACAAATTCAGCGTTATCAGTATTTTTCTCTGAAATGTTGGAAAAGGATCGTGTTCTACCATCGAGAGTTCATGCTCATATGGTTTTGGACGGTTTAGCCAGAGTTGGAGACAGTGAAAATGCATTTCGCGTTTATAAAAAAATGACTGAATTGGGTATTAATGCAACCCAGGCAACTTACTCACGCTTGTTTCGCGCTTGCGCTGAGGATATTGCAACATGGTTTCGAAGGAATAGAACTCTTATTCCACCTGTTGTAATTCGTACTGAGAACCATTCATCGTTATTACAGCGTAAAATGCTGGCTCTTCAGAAAGCGTTGGCTCCAGATATGTCACCAGATAACTTTGGTGGACCTGCACTTCATAAAGTGTATCGTTTTTGGCGTCGTTTAACGGAAAAAAATATTCCAATGAATCAATTTACATACAATGCACTTATTTTGGCTCTTGCCAAAGCTGGTGATATTCATGGTTGTCTGCGTGCCCTGGATATGATGTTGGCAACAGAAAACAGTGAACGGTTNTCTCAAGGATCAGTTGGTTGTAAAAATAAGTGGTTGGTTCCCGATTCTTTCACTATAACATCTGTATTGTCATCTATTGAACCAGCTACTATGAAAAGAAATCTGGAATCGTGTCATCGACGTATGGATTCATCGG]

[+] EMBL CD129042             [TTTGGTGCTCTTAATGCGGATATTTTAGATCATCAACTAAATGATGAGTCAGTTGTTTCTGCAACAAGAGATAAGATAGAATCGGTTATCGATGAACTGTTGAGTAATGATGAACCTGAAGAAGATCCTGCTGATTGTTTAAGATTAAGTAAAATTTGCCGTCATCATCCTCCTGAGCATTATTTAAAATTAATTAAACGTTATTGTAGAGCAGGTGATACAAATTCAGCGTTATCAGTATTTTTCTCTGAAATGTTGGAAAAGGATCGTGTTCTACCATCGAGAGTTCATGCTCATATGGTTTTGGACGGTTTAGCCAGAGTTGGAGACAGTGAAAGTGCATTTCGCGTTTATAAAAAAATGACTGAATTGGGTATTAATGCAACCCAGGCAACTTACTCACGCTTGTTTCGCGCTTGCGCTGAGGATATTGCAACATGGTTTCGAAGGAATAGAACTCTTATTCCACCTGTTGTAATTCGTACTGAGAACCATTCATCGTTATTACAGCGTAAAATGCTGGCTCTTCAG                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD121238             [                                                                                                                                                                                                        TTATTGTAGAGCAGGTGATACAAATTCAGCGTTATCAGTATTTTTCTCTGAAATGTTGGAAAAGGATCGTGTTCTACCATCGAGAGTTCATGCTCATATGGTTTTGGACGGTTTAGCCAGAGTTGGAGACAGTGAAAATGCATTTCGCGTTTATAAAAAAATGACTGAATTGGGTATTAATGCAACCCAGGCAACTTACTCACGCTTGTTTCGCGCTTGCGCTGAGGATATTGCAACATGGTTTCGAAGGAATAGAACTCTTATTCCACCTGTTGTAATTCGTACTGAGAACCATTCATCGTTATTACAGCGTAAAATGCTGGCTCTTCAGAAAGCGTTGGCTCCAGATATGTCACCAGATAACTTTGGTGGACCTGCACTTCATAAAGTGTATCGTTTTTGGCGTCGTTTAACGGAAAAAAATATTCCAATGAATCAATTTACATACAATGCACTTATTTTGGCTCTTGCCAAAGCTGGTGATATTCATGGTTGTCTGCGTGCCCTGGATATGATGTTGGCAACAGAAAACAGTGAACGGTTNTCTCAAGG                                                                                                                                ]
[+] EMBL CD121192             [                                                                                                                                                                                                        TTATTGTAGAGCAGGTGATACAAATTCAGCGTTATCAGTATTTTTCTCTGAAATGTTGGAAAAGGATCGTGTTCTACCATCGAGAGTTCATGCTCATATGGTTTTGGACGGTTTAGCCAGAGTTGGAGACAGTGAAAATGCATTTCGCGTTTATAAAAAAATGACTGAATTGGGTATTAATGCAACCCAGGCAACTTACTCACGCTTGTTTCGCGCTTGCGCTGAGGATATTGCAACATGGTTTCGAAGGAATAGAACTCTTATTCCACCTGTTGTAATTCGTACTGAGAACCATTCATCGTTATTACAGCGTAAAATGCTGGCTCTTCAGAAAGCGTTGGCTCCAGATATGTCACCAGATAACTTTGGTGGACCTGCACTTCATAAAGTGTATCGTTTTTGGCGTCGTTTAACGGAAAAAAATATTCCAATGAATCAATTTACATACAATGCACTTATTTTGGCTCTTGCCAAAGCTGGTGATATTCATGGTTGTCTGCGTGCCCTGNATATGATGTTGGCAACAGAAAACAGTGAACGGTTNTCT                                                                                                                                     ]
[-] EMBL CD060218             [                                                                                                                                                                                                                                                                                                                                              AAAATGCATTTCGCGTTTATAAAAAAATGACTGAATTGGGTATTAATGCAACCCAGGCAACTTACTCACGCTTGTTTCGCGCTTGCGCTGAGGATATTGCAACATGGTTTCGAAGGAATAGAACTCTTATTCCACCTGTTGTAATTCGTACTGAGAACCATTCATCGTTATTACAGCGTAAAATGCTGGCTCTTCAGAAAGCGTTGGCTCCAGATATGTCACCAGATAACTTTGGTGGACCTGCACTTCATAAAGTGTATCGTTTTTGGCGTCGTTTAACGGAAAAAAATATTCCAATGAATCAATTTACATACAATGCACTTATTTTGGCTCTTGCCAAAGCTGGTGATATTCATGGTTGTCTGCGTGCCCTGGATATGATGTTGGCAACAGAAAACAGTGAACGGTTTTCTCAAGGATCAGTTGGTTGTAAAAATAAGTGGTTGGTTCCCGATTCTTTCACTATAACATCTGTATTGTCATCTATTGAACCAGCTACTATGAAAAGAAATCTGGAATCGTGTCATCGACGTATGGATTCATCGG]


>consensus_8274#0 TTTGGTGCTCTTAATGCGGATATTTTAGATCATCAACTAAATGATGAGTCAGTTGTTTCT GCAACAAGAGATAAGATAGAATCGGTTATCGATGAACTGTTGAGTAATGATGAACCTGAA GAAGATCCTGCTGATTGTTTAAGATTAAGTAAAATTTGCCGTCATCATCCTCCTGAGCAT TATTTAAAATTAATTAAACGTTATTGTAGAGCAGGTGATACAAATTCAGCGTTATCAGTA TTTTTCTCTGAAATGTTGGAAAAGGATCGTGTTCTACCATCGAGAGTTCATGCTCATATG GTTTTGGACGGTTTAGCCAGAGTTGGAGACAGTGAAAATGCATTTCGCGTTTATAAAAAA ATGACTGAATTGGGTATTAATGCAACCCAGGCAACTTACTCACGCTTGTTTCGCGCTTGC GCTGAGGATATTGCAACATGGTTTCGAAGGAATAGAACTCTTATTCCACCTGTTGTAATT CGTACTGAGAACCATTCATCGTTATTACAGCGTAAAATGCTGGCTCTTCAGAAAGCGTTG GCTCCAGATATGTCACCAGATAACTTTGGTGGACCTGCACTTCATAAAGTGTATCGTTTT TGGCGTCGTTTAACGGAAAAAAATATTCCAATGAATCAATTTACATACAATGCACTTATT TTGGCTCTTGCCAAAGCTGGTGATATTCATGGTTGTCTGCGTGCCCTGGATATGATGTTG GCAACAGAAAACAGTGAACGGTTNTCTCAAGGATCAGTTGGTTGTAAAAATAAGTGGTTG GTTCCCGATTCTTTCACTATAACATCTGTATTGTCATCTATTGAACCAGCTACTATGAAA AGAAATCTGGAATCGTGTCATCGACGTATGGATTCATCGG



consensusID : consensus_8274#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 680
fasta sequence
                              [GACTATCTGTTGATTATTGCTTTAGTATCCAGTGTTTTTGGTGCTAATAATGCTCATCGGTTGCTCTAGAATTTGTAGCCTACTGAAATCATCGCTTTATCATTATAGAATTCAACCAATCACTGCTTGTAGCCTGTTGTTGTGGAGACGTTCTCAATCACACTACAAGGCCAATTTATCTACTCGTGATCTTGTGGAAGTGATTAATCAGAAAGCTAAAATTCACAGGTATATAAAGCCACAAGAGCCTGAAGAATCTTTGTATGTAAATAGCCTGGAGAGATGTGATTCAGAAGAGGAATTGAACGTCATATCGGAAAATGATCAGTTTGATTTTGGTGCTCTTAATGCGGATAATTTAGATCCACAGCCATATCATGAGTCACTTGTTACTCGATCAATGTACAACATAGAAAAAAAGTCAGTTATTGATGAACTGTTGAGTAATGATGAACCTGAAGAAGATCCTGCTGATTGTTTAAGATTAAGTAAAATTTACCGTCGTCATCCTCCTGAACATTATTTAAAATTAATTAAACGTTATTGTAGAGCAGGTGATACAAATTCAGCGTTATCAGTAAGAATTTAATCTCTTCCTTTTCTCATTGTTAATGTTTTTTGTATTGGTCTACCATGTGAATTGTTATATTTTCCTGCATCAACATANATAATACTGACTT]

[+] EMBL CD082099             [GACTATCTGTTGATTATTGCTTTAGTATCCAGTGTTTTTGGTGCTAATAATGCTCATCGGTTGCTCTAGAATTTGTAGCCTACTGAAATCATCGCTTTATCATTATAGAATTCAACCAATCACTGCTTGTAGCCTGTTGTTGTGGAGACGTTCTCAATCACACTACAAGGCCAATTTATCTACTCGTGATCTTGTGGAAGTGATTAATCAGAAAGCTAAAATTCACAGGTATATAAAGCCACAAGAGCCTGAAGAATCTTTGTATGTAAATAGCCTGGAGAGATGTGATTCAGAAGAGGAATTGAACGTCATATCGGAAAATGATCAGTTTGATTTTGGTGCTCTTAATGCGGATAATTTAGATCCACAGCCATATCATGAGTCACTTGTTACTCGATCAATGTACAACATAGAAAAAAAGTCAGTTATTGATGAACTGTTGAGTAATGATGAACCTGAAGAAGATCCTGCTGATTGTTTAAGATTAAGTAAAATTTACCGTCGTCATCCTCCTGAACATTATTTAAAATTAATTAAACGTTATTGTAGAGCAGGTGATACAAATTCAGCGTTATCAGTAAGAATTTAATCTCTTCCTTTTCTCATTGTTAATGTTTTTTGTATTGGTCTACCATGTGAATTGTTATATTTTCCTGCATCAACATANATAATACTGACTT]
[-] EMBL CD075714             [                                                                                                                                   GCCTGTTGTTGTGGAGACGTTCTCAATCACACTACAAGGCCAATTTATCTACTCGTGATCTTGTGGAAGTGATTAATCAGAAAGCTAAAATTCACAGGTATATAAAGCCCCAAGAGCCTGAAGAATCTTTGTATGTAAATAGCCTGGAGAGATGTGATTCAGAAGAGGAATTGAACGTCATATCGGAAAATGATCAGTTTGATTTTGGTGCTCTTAATGCGGATAATTTAGATCCCCAGCCATATCATGAGTCACTTGTTACTCGATCAATGTACAACATAGAAAAAAAGTCAGTTATTGATGAACTGTTGAGTAATGATGAACCTGAAGAAGATCCTGCTGATTGTTTAAGATTAAGTAAAATTTACCGTCGTCATCCTCCTGAACATTATTTAAAATTAATTAAACGTTATTGTAGAGCAGGTGATACAAATTCAGCGTTATCAGTAAGAATTTAATCTCTTCCTTTTCTCATTGTTAATGTTTTTTGTATTGGTCTACCATGTGAATTGTTATATTTTCCTGCATCAACATAAATAATACTGACT ]


>consensus_8274#1 GACTATCTGTTGATTATTGCTTTAGTATCCAGTGTTTTTGGTGCTAATAATGCTCATCGG TTGCTCTAGAATTTGTAGCCTACTGAAATCATCGCTTTATCATTATAGAATTCAACCAAT CACTGCTTGTAGCCTGTTGTTGTGGAGACGTTCTCAATCACACTACAAGGCCAATTTATC TACTCGTGATCTTGTGGAAGTGATTAATCAGAAAGCTAAAATTCACAGGTATATAAAGCC ACAAGAGCCTGAAGAATCTTTGTATGTAAATAGCCTGGAGAGATGTGATTCAGAAGAGGA ATTGAACGTCATATCGGAAAATGATCAGTTTGATTTTGGTGCTCTTAATGCGGATAATTT AGATCCACAGCCATATCATGAGTCACTTGTTACTCGATCAATGTACAACATAGAAAAAAA GTCAGTTATTGATGAACTGTTGAGTAATGATGAACCTGAAGAAGATCCTGCTGATTGTTT AAGATTAAGTAAAATTTACCGTCGTCATCCTCCTGAACATTATTTAAAATTAATTAAACG TTATTGTAGAGCAGGTGATACAAATTCAGCGTTATCAGTAAGAATTTAATCTCTTCCTTT TCTCATTGTTAATGTTTTTTGTATTGGTCTACCATGTGAATTGTTATATTTTCCTGCATC AACATANATAATACTGACTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8274#0      TTTGGTGCTCTTAATGCGGATATTTTAGATCATCAACTAAATGATGAGTCAGTTGTTTCT 60
consensus_8274#1      ------------------------------------------------------------
                                                                                  

consensus_8274#0      GCAACAAGAGATAAGATAGAATCGGTTATCGATGAACTGTTGAGTAATGATGAACCTGAA 120
consensus_8274#1      ---------GACTATCTG---TTGATTATTGCTTTAGTATCCAGTGTTTTTGGTGCTAAT 48
                               **  *  *    * * **** * *  * * *  ***  *  **   ** * 

consensus_8274#0      GAAGATCCTGCTGATTGTTTAAGATTAAGTAAAATTTGCCGTCATCATCCTCCTGAGCAT 180
consensus_8274#1      AATG--CTCATCGGTTGCTCTAGAATTTGTAG--CCTACTGAAATCATCG-CTTTATCAT 103
                       * *  *     * *** *  *** *  ***     * * *  ******  * * * ***

consensus_8274#0      TATTTAAAATTAATTAAACGTTATTGTAGAGCAGGTGATACAAATTCAGCGTTATCAGTA 240
consensus_8274#1      TATA-GAATTCAACCAATCACTGCTTGTAGCCTGTTGTTGTGGA---GACGTTCTCA--A 157
                      ***   ** * **  ** *  *  *      * * ** *    *     **** ***  *

consensus_8274#0      TTTTTCTCTGAAATGTTGGAAAAGGATCGTGTTCTACCATCGAGAGTTCATGCTCATATG 300
consensus_8274#1      TCACACTACAAGGCCAATTTATCTACTCGTGATCTTGT---GGAAGTGATTAATCAGAAA 214
                      *    **   *         *     ***** ***      *  ***   *  *** *  

consensus_8274#0      GTTTTGGACGGTTTAGCCAGAGTTGGAGACAGTGAAAATGCATTTCGCGTTTATAAAAAA 360
consensus_8274#1      GCT----AAAATTCA-CAGGTATATAAAGCCACAAGAGCCTGAAGAATCTTTGTATGTAA 269
                      * *    *   ** * *  *  *   *  *    * *            *** **   **

consensus_8274#0      ATGACTGAATTGGGTATTAATGCAACCCAGGCAACTTACTCACGCTTGTTTCGCGCTTGC 420
consensus_8274#1      ATAGCC----TGGAGA--GATGTGATTCAGAAGAGGAATTGAACGTCATATCG------- 316
                      **  *     ***  *   ***  *  ***   *   * * *   *  * ***       

consensus_8274#0      GCTGAGGATATTGCAACATGGTTTCGAAGGAATAGAACTCTTATTCCACCTGTTGTAATT 480
consensus_8274#1      ---GAAAATGAT-CAGTTTGATTTTGGTGCTCTT-AATGCGGATAATTTAGATCCACAGC 371
                         **  **  * **   ** *** *  *   *  **  *  **        *    *  

consensus_8274#0      CGTACTGAGAACCATTCATCGTTATTACAGCGTAAAATGCTGGCTCTTCAGAAAGCGTTG 540
consensus_8274#1      CATATCATGAGTCACTTGTTACTCGATCAATGTACAACATAG-------AAAAAAAGTCA 424
                      * **    **  ** *  *   *    **  *** **    *       * ***  **  

consensus_8274#0      GCTCCAGATATGTCACCAGATAACTTTGGTGGACCTGCACTTCATAAAGTGTATCGTTTT 600
consensus_8274#1      GTTATTGATGAACTGTTGAGTAA---TGATGAACCTGAAGAAGATCCTGCTGATTGTTTA 481
                      * *   ***           ***   ** ** ***** *    **   *   ** **** 

consensus_8274#0      TGGCGTCGTTTAACGGAAAAAAATATTCCAATGAATCAATTTACATACAATGCACTTATT 660
consensus_8274#1      AGATTAAGTAAAATTTACCGTCGTCATCCTCCTGAACA--TTATTTAAAATTAATTAAAC 539
                       *     **  **   *      *  ***     * **  ***  ** ***  * * *  

consensus_8274#0      TTGGCTCTTGCCAAAGCTGGTGATATTCATGGTTGTCTGCGTGCCCTGGATATGATGTTG 720
consensus_8274#1      GTTATTGTAGAGCAGGTGATACAAATTCAGCGTTATCAGTAAG-----AATTTAATCTCT 594
                       *   * * *   * *      * *****  *** ** *   *      ** * ** *  

consensus_8274#0      GCAACAGAAAACAGTGAACGGTTNTCTCAAGGATCAGTTGGTTGTAAAAATAAGTGGTTG 780
consensus_8274#1      TCCTTTTCTCATTGTTAATGTTTTTT----GTATTGGTCTACCATGTGAATT-GTTATAT 649
                       *        *  ** ** * ** *     * **  **      *   ***  **  *  

consensus_8274#0      GTTCCCGATTCTTTCACTATAACATCTGTATTGTCATCTATTGAACCAGCTACTATGAAA 840
consensus_8274#1      TTTCCTGCATCAACATANATAATA-CTGACTT---------------------------- 680
                       **** *  **       **** * ***  **                            

consensus_8274#0      AGAAATCTGGAATCGTGTCATCGACGTATGGATTCATCGG 880
consensus_8274#1      ----------------------------------------
                                                              




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)