These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8274#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 880 fasta sequence [TTTGGTGCTCTTAATGCGGATATTTTAGATCATCAACTAAATGATGAGTCAGTTGTTTCTGCAACAAGAGATAAGATAGAATCGGTTATCGATGAACTGTTGAGTAATGATGAACCTGAAGAAGATCCTGCTGATTGTTTAAGATTAAGTAAAATTTGCCGTCATCATCCTCCTGAGCATTATTTAAAATTAATTAAACGTTATTGTAGAGCAGGTGATACAAATTCAGCGTTATCAGTATTTTTCTCTGAAATGTTGGAAAAGGATCGTGTTCTACCATCGAGAGTTCATGCTCATATGGTTTTGGACGGTTTAGCCAGAGTTGGAGACAGTGAAAATGCATTTCGCGTTTATAAAAAAATGACTGAATTGGGTATTAATGCAACCCAGGCAACTTACTCACGCTTGTTTCGCGCTTGCGCTGAGGATATTGCAACATGGTTTCGAAGGAATAGAACTCTTATTCCACCTGTTGTAATTCGTACTGAGAACCATTCATCGTTATTACAGCGTAAAATGCTGGCTCTTCAGAAAGCGTTGGCTCCAGATATGTCACCAGATAACTTTGGTGGACCTGCACTTCATAAAGTGTATCGTTTTTGGCGTCGTTTAACGGAAAAAAATATTCCAATGAATCAATTTACATACAATGCACTTATTTTGGCTCTTGCCAAAGCTGGTGATATTCATGGTTGTCTGCGTGCCCTGGATATGATGTTGGCAACAGAAAACAGTGAACGGTTNTCTCAAGGATCAGTTGGTTGTAAAAATAAGTGGTTGGTTCCCGATTCTTTCACTATAACATCTGTATTGTCATCTATTGAACCAGCTACTATGAAAAGAAATCTGGAATCGTGTCATCGACGTATGGATTCATCGG] [+] EMBL CD129042 [TTTGGTGCTCTTAATGCGGATATTTTAGATCATCAACTAAATGATGAGTCAGTTGTTTCTGCAACAAGAGATAAGATAGAATCGGTTATCGATGAACTGTTGAGTAATGATGAACCTGAAGAAGATCCTGCTGATTGTTTAAGATTAAGTAAAATTTGCCGTCATCATCCTCCTGAGCATTATTTAAAATTAATTAAACGTTATTGTAGAGCAGGTGATACAAATTCAGCGTTATCAGTATTTTTCTCTGAAATGTTGGAAAAGGATCGTGTTCTACCATCGAGAGTTCATGCTCATATGGTTTTGGACGGTTTAGCCAGAGTTGGAGACAGTGAAAGTGCATTTCGCGTTTATAAAAAAATGACTGAATTGGGTATTAATGCAACCCAGGCAACTTACTCACGCTTGTTTCGCGCTTGCGCTGAGGATATTGCAACATGGTTTCGAAGGAATAGAACTCTTATTCCACCTGTTGTAATTCGTACTGAGAACCATTCATCGTTATTACAGCGTAAAATGCTGGCTCTTCAG ] [+] EMBL CD121238 [ TTATTGTAGAGCAGGTGATACAAATTCAGCGTTATCAGTATTTTTCTCTGAAATGTTGGAAAAGGATCGTGTTCTACCATCGAGAGTTCATGCTCATATGGTTTTGGACGGTTTAGCCAGAGTTGGAGACAGTGAAAATGCATTTCGCGTTTATAAAAAAATGACTGAATTGGGTATTAATGCAACCCAGGCAACTTACTCACGCTTGTTTCGCGCTTGCGCTGAGGATATTGCAACATGGTTTCGAAGGAATAGAACTCTTATTCCACCTGTTGTAATTCGTACTGAGAACCATTCATCGTTATTACAGCGTAAAATGCTGGCTCTTCAGAAAGCGTTGGCTCCAGATATGTCACCAGATAACTTTGGTGGACCTGCACTTCATAAAGTGTATCGTTTTTGGCGTCGTTTAACGGAAAAAAATATTCCAATGAATCAATTTACATACAATGCACTTATTTTGGCTCTTGCCAAAGCTGGTGATATTCATGGTTGTCTGCGTGCCCTGGATATGATGTTGGCAACAGAAAACAGTGAACGGTTNTCTCAAGG ] [+] EMBL CD121192 [ TTATTGTAGAGCAGGTGATACAAATTCAGCGTTATCAGTATTTTTCTCTGAAATGTTGGAAAAGGATCGTGTTCTACCATCGAGAGTTCATGCTCATATGGTTTTGGACGGTTTAGCCAGAGTTGGAGACAGTGAAAATGCATTTCGCGTTTATAAAAAAATGACTGAATTGGGTATTAATGCAACCCAGGCAACTTACTCACGCTTGTTTCGCGCTTGCGCTGAGGATATTGCAACATGGTTTCGAAGGAATAGAACTCTTATTCCACCTGTTGTAATTCGTACTGAGAACCATTCATCGTTATTACAGCGTAAAATGCTGGCTCTTCAGAAAGCGTTGGCTCCAGATATGTCACCAGATAACTTTGGTGGACCTGCACTTCATAAAGTGTATCGTTTTTGGCGTCGTTTAACGGAAAAAAATATTCCAATGAATCAATTTACATACAATGCACTTATTTTGGCTCTTGCCAAAGCTGGTGATATTCATGGTTGTCTGCGTGCCCTGNATATGATGTTGGCAACAGAAAACAGTGAACGGTTNTCT ] [-] EMBL CD060218 [ AAAATGCATTTCGCGTTTATAAAAAAATGACTGAATTGGGTATTAATGCAACCCAGGCAACTTACTCACGCTTGTTTCGCGCTTGCGCTGAGGATATTGCAACATGGTTTCGAAGGAATAGAACTCTTATTCCACCTGTTGTAATTCGTACTGAGAACCATTCATCGTTATTACAGCGTAAAATGCTGGCTCTTCAGAAAGCGTTGGCTCCAGATATGTCACCAGATAACTTTGGTGGACCTGCACTTCATAAAGTGTATCGTTTTTGGCGTCGTTTAACGGAAAAAAATATTCCAATGAATCAATTTACATACAATGCACTTATTTTGGCTCTTGCCAAAGCTGGTGATATTCATGGTTGTCTGCGTGCCCTGGATATGATGTTGGCAACAGAAAACAGTGAACGGTTTTCTCAAGGATCAGTTGGTTGTAAAAATAAGTGGTTGGTTCCCGATTCTTTCACTATAACATCTGTATTGTCATCTATTGAACCAGCTACTATGAAAAGAAATCTGGAATCGTGTCATCGACGTATGGATTCATCGG] consensusID : consensus_8274#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 680 fasta sequence [GACTATCTGTTGATTATTGCTTTAGTATCCAGTGTTTTTGGTGCTAATAATGCTCATCGGTTGCTCTAGAATTTGTAGCCTACTGAAATCATCGCTTTATCATTATAGAATTCAACCAATCACTGCTTGTAGCCTGTTGTTGTGGAGACGTTCTCAATCACACTACAAGGCCAATTTATCTACTCGTGATCTTGTGGAAGTGATTAATCAGAAAGCTAAAATTCACAGGTATATAAAGCCACAAGAGCCTGAAGAATCTTTGTATGTAAATAGCCTGGAGAGATGTGATTCAGAAGAGGAATTGAACGTCATATCGGAAAATGATCAGTTTGATTTTGGTGCTCTTAATGCGGATAATTTAGATCCACAGCCATATCATGAGTCACTTGTTACTCGATCAATGTACAACATAGAAAAAAAGTCAGTTATTGATGAACTGTTGAGTAATGATGAACCTGAAGAAGATCCTGCTGATTGTTTAAGATTAAGTAAAATTTACCGTCGTCATCCTCCTGAACATTATTTAAAATTAATTAAACGTTATTGTAGAGCAGGTGATACAAATTCAGCGTTATCAGTAAGAATTTAATCTCTTCCTTTTCTCATTGTTAATGTTTTTTGTATTGGTCTACCATGTGAATTGTTATATTTTCCTGCATCAACATANATAATACTGACTT] [+] EMBL CD082099 [GACTATCTGTTGATTATTGCTTTAGTATCCAGTGTTTTTGGTGCTAATAATGCTCATCGGTTGCTCTAGAATTTGTAGCCTACTGAAATCATCGCTTTATCATTATAGAATTCAACCAATCACTGCTTGTAGCCTGTTGTTGTGGAGACGTTCTCAATCACACTACAAGGCCAATTTATCTACTCGTGATCTTGTGGAAGTGATTAATCAGAAAGCTAAAATTCACAGGTATATAAAGCCACAAGAGCCTGAAGAATCTTTGTATGTAAATAGCCTGGAGAGATGTGATTCAGAAGAGGAATTGAACGTCATATCGGAAAATGATCAGTTTGATTTTGGTGCTCTTAATGCGGATAATTTAGATCCACAGCCATATCATGAGTCACTTGTTACTCGATCAATGTACAACATAGAAAAAAAGTCAGTTATTGATGAACTGTTGAGTAATGATGAACCTGAAGAAGATCCTGCTGATTGTTTAAGATTAAGTAAAATTTACCGTCGTCATCCTCCTGAACATTATTTAAAATTAATTAAACGTTATTGTAGAGCAGGTGATACAAATTCAGCGTTATCAGTAAGAATTTAATCTCTTCCTTTTCTCATTGTTAATGTTTTTTGTATTGGTCTACCATGTGAATTGTTATATTTTCCTGCATCAACATANATAATACTGACTT] [-] EMBL CD075714 [ GCCTGTTGTTGTGGAGACGTTCTCAATCACACTACAAGGCCAATTTATCTACTCGTGATCTTGTGGAAGTGATTAATCAGAAAGCTAAAATTCACAGGTATATAAAGCCCCAAGAGCCTGAAGAATCTTTGTATGTAAATAGCCTGGAGAGATGTGATTCAGAAGAGGAATTGAACGTCATATCGGAAAATGATCAGTTTGATTTTGGTGCTCTTAATGCGGATAATTTAGATCCCCAGCCATATCATGAGTCACTTGTTACTCGATCAATGTACAACATAGAAAAAAAGTCAGTTATTGATGAACTGTTGAGTAATGATGAACCTGAAGAAGATCCTGCTGATTGTTTAAGATTAAGTAAAATTTACCGTCGTCATCCTCCTGAACATTATTTAAAATTAATTAAACGTTATTGTAGAGCAGGTGATACAAATTCAGCGTTATCAGTAAGAATTTAATCTCTTCCTTTTCTCATTGTTAATGTTTTTTGTATTGGTCTACCATGTGAATTGTTATATTTTCCTGCATCAACATAAATAATACTGACT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8274#0 TTTGGTGCTCTTAATGCGGATATTTTAGATCATCAACTAAATGATGAGTCAGTTGTTTCT 60 consensus_8274#1 ------------------------------------------------------------ consensus_8274#0 GCAACAAGAGATAAGATAGAATCGGTTATCGATGAACTGTTGAGTAATGATGAACCTGAA 120 consensus_8274#1 ---------GACTATCTG---TTGATTATTGCTTTAGTATCCAGTGTTTTTGGTGCTAAT 48 ** * * * * **** * * * * * *** * ** ** * consensus_8274#0 GAAGATCCTGCTGATTGTTTAAGATTAAGTAAAATTTGCCGTCATCATCCTCCTGAGCAT 180 consensus_8274#1 AATG--CTCATCGGTTGCTCTAGAATTTGTAG--CCTACTGAAATCATCG-CTTTATCAT 103 * * * * *** * *** * *** * * * ****** * * * *** consensus_8274#0 TATTTAAAATTAATTAAACGTTATTGTAGAGCAGGTGATACAAATTCAGCGTTATCAGTA 240 consensus_8274#1 TATA-GAATTCAACCAATCACTGCTTGTAGCCTGTTGTTGTGGA---GACGTTCTCA--A 157 *** ** * ** ** * * * * * ** * * **** *** * consensus_8274#0 TTTTTCTCTGAAATGTTGGAAAAGGATCGTGTTCTACCATCGAGAGTTCATGCTCATATG 300 consensus_8274#1 TCACACTACAAGGCCAATTTATCTACTCGTGATCTTGT---GGAAGTGATTAATCAGAAA 214 * ** * * ***** *** * *** * *** * consensus_8274#0 GTTTTGGACGGTTTAGCCAGAGTTGGAGACAGTGAAAATGCATTTCGCGTTTATAAAAAA 360 consensus_8274#1 GCT----AAAATTCA-CAGGTATATAAAGCCACAAGAGCCTGAAGAATCTTTGTATGTAA 269 * * * ** * * * * * * * * *** ** ** consensus_8274#0 ATGACTGAATTGGGTATTAATGCAACCCAGGCAACTTACTCACGCTTGTTTCGCGCTTGC 420 consensus_8274#1 ATAGCC----TGGAGA--GATGTGATTCAGAAGAGGAATTGAACGTCATATCG------- 316 ** * *** * *** * *** * * * * * * *** consensus_8274#0 GCTGAGGATATTGCAACATGGTTTCGAAGGAATAGAACTCTTATTCCACCTGTTGTAATT 480 consensus_8274#1 ---GAAAATGAT-CAGTTTGATTTTGGTGCTCTT-AATGCGGATAATTTAGATCCACAGC 371 ** ** * ** ** *** * * * ** * ** * * consensus_8274#0 CGTACTGAGAACCATTCATCGTTATTACAGCGTAAAATGCTGGCTCTTCAGAAAGCGTTG 540 consensus_8274#1 CATATCATGAGTCACTTGTTACTCGATCAATGTACAACATAG-------AAAAAAAGTCA 424 * ** ** ** * * * ** *** ** * * *** ** consensus_8274#0 GCTCCAGATATGTCACCAGATAACTTTGGTGGACCTGCACTTCATAAAGTGTATCGTTTT 600 consensus_8274#1 GTTATTGATGAACTGTTGAGTAA---TGATGAACCTGAAGAAGATCCTGCTGATTGTTTA 481 * * *** *** ** ** ***** * ** * ** **** consensus_8274#0 TGGCGTCGTTTAACGGAAAAAAATATTCCAATGAATCAATTTACATACAATGCACTTATT 660 consensus_8274#1 AGATTAAGTAAAATTTACCGTCGTCATCCTCCTGAACA--TTATTTAAAATTAATTAAAC 539 * ** ** * * *** * ** *** ** *** * * * consensus_8274#0 TTGGCTCTTGCCAAAGCTGGTGATATTCATGGTTGTCTGCGTGCCCTGGATATGATGTTG 720 consensus_8274#1 GTTATTGTAGAGCAGGTGATACAAATTCAGCGTTATCAGTAAG-----AATTTAATCTCT 594 * * * * * * * ***** *** ** * * ** * ** * consensus_8274#0 GCAACAGAAAACAGTGAACGGTTNTCTCAAGGATCAGTTGGTTGTAAAAATAAGTGGTTG 780 consensus_8274#1 TCCTTTTCTCATTGTTAATGTTTTTT----GTATTGGTCTACCATGTGAATT-GTTATAT 649 * * ** ** * ** * * ** ** * *** ** * consensus_8274#0 GTTCCCGATTCTTTCACTATAACATCTGTATTGTCATCTATTGAACCAGCTACTATGAAA 840 consensus_8274#1 TTTCCTGCATCAACATANATAATA-CTGACTT---------------------------- 680 **** * ** **** * *** ** consensus_8274#0 AGAAATCTGGAATCGTGTCATCGACGTATGGATTCATCGG 880 consensus_8274#1 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||