cluster # 8277

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Schistosoma mansoni
cluster # 8277 cluster # 8277 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8277#0 length = 759 sequences # 3

consensus_8277#1 length = 258 sequences # 2
consensus_8277#2 length = 173 sequences # 1

consensusID : consensus_8277#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 759
fasta sequence

                              [CCGAACTCATGACTCAAGGATGAAGTTTTATCTGCAACTGTTTAAGGGTGTAACAGCCAGTATTTATAGCGATACTAACTTTCCACAGAGAAAGCAAGTAATTGAAGAAAGTTAATGCTGAAATTATCACACCTCAACTTGTTCCATGGATTTCTGTTGCCAGTGGTAAGGGCTTAAAATTACCGAGCTTATTTATCAAAAACTACTCTCACAAATCCTTTGTGTGTTACTTAGTTCAAGCTGTTTTCCATTGGGCAGTGTAGCAAGCTTCCAAGTCATCAAGACCATCAATAACCCAGTTTTCTTTTCAGGTTCTTCAATATAAAGCAATCCTCAACGGTGTAGGCAACCAGGAAGTGACAGCCACCCTCACACCTCTAACAGCACTAGTGACCAACTTGAAAAACTAATTATTTAGATACCATTGTAGTAAATGCGAACTCAGGAGTGGAAAACCAATCTATTGTTTAGTGCAAAATTACAGAGTTTTTTCGTAAGATGTGAAAACCATACATTAAATACTTCATTTGCAAATCCTCCATTAATTGTCTCAAACTTCATCGTCTTTCATAGCTATTACGATTACTCTCTGTTTACATTTTCGTTCTCTTCGATTCGACCTCAACCTTCTGCTGCCAGGCATTCCACTTCTAACTGATGTTACATTAGTTTTGTCGACATGAGCAGTATATACCACATTATAATAAAGAATCTAAGCGTGATTTATCTGAGGTATCATTTTACTGACTAGCTAACAGT]

[+] EMBL CD095684             [CCGAACTCATGACTCAAGGATGAAGTTTTATCTGCAACTGTTTAAGGGTGTAACAGCCAGTATTTATAGCGATACTAACTTTCCACAGAGAAAGCAAGTAATTGAAGAAAGTTAATGCTGAAATTATCACACCTCAACTTGTTCCATGGATTTCTGTTGCCAGTGGTAAGGGCTTAAAATTACCGAGCTTATTTATCAAAAACTACTCTCACAAATCCTTTGTGTGTTACTTAGTTCAAGCTGTTTTCCATTGGGCAGTGTAGCAAGCTTCCAAGTCATCAAGACCATCAATAACCCAGTTTTCTTTTCAGGTTCTTCAATATAAAGCAATCCTCAACGGTGTAGGCAACCAGGAAGTGACAGCCACCCTCACACCTCTAACAGCACTAGTGACCAACTTGAAAAACTAATTATTTAGATACCATTGCAGTAAATGCGAACTCAGGAGTGGAAAACCAATCTATTGTTTAGTGCAAAATTACAGAGTTTTTTCGTAAGATGTGAAAACCATACATTACATACTT                                                                                                                                                                                                                                           ]
[-] EMBL CD063829             [                                                                                                                                                                                                                                                                                                         AGTTTTCTTTTCAGGTTCTTCAATATAAAGCAATCCTCAACGGTGTAGGCAACCAGGAAGTGACAGCCACCCTCACACCTCTAACAGCACTAGTGACCAACTTGAAAAACTAATGATTTAGATACCATTGTAGTAAATGCGAACTCAGGAGTGGAAAACCAATCTATTGTTTAGTGCAAAATTACAGAGTTTTTTCGTAAGATGTGAAAGCCATACATTAAATACTTCATTTGCAAATCCTCCATTAATTGTCTCAAACTTCATCGTCTTTCATAGCTATTACGATTACTCTCTGTTTACATTTTCGTTCTCTTCGATTCGACCTCAACCTTCTGCTGCCAGGCATTCCACTTCTAACTGATGTTACATTAGTTTTGTCGACATGAGCAGTATATACCACATTATAATAAAGAATCTAAGCGTGATTTATCTGAGGTATCATTTTACTGACTAGCTAACAGT]
[+] EMBL CD063811             [                                                                                                                                                                                                                                                                                                              TCTTTTCAGGTTCTTCAATATAAAGCAATCCTCAACGGTGTAGGCAACCAGGAAGTGACAGCCACCCTCACACCTCTAACAGCACTAGTGACCAACTTGAAAAACTAATTATTTAGATACCATTGTAGTAAATGCGAACTCAGGAGTGGAAAACCAATCTATTGTTTAGTGCAAAATTACAGAGTTTTTTCGTAAGATGTGAAAACCATACATTAAATACTTCATTTGCAAATCCTCCATTAATTGTCTCAAACTCCATCGTCTTTCATAGCTATTACGATTACTCTCTGTTTACATTTTCGTTCTCTTCGATTCGACCTCAACCTTCTGCTGCCAGGCATTCCACTTCTAACTGATGTTACATTAGTTTTGTCGACATGAGCAGTATATACCACATTATAATAAAGAATCTAAGCGTGATTTATCTGAGGTATCATTTTACTGACTA         ]




>consensus_8277#0
CCGAACTCATGACTCAAGGATGAAGTTTTATCTGCAACTGTTTAAGGGTGTAACAGCCAG
TATTTATAGCGATACTAACTTTCCACAGAGAAAGCAAGTAATTGAAGAAAGTTAATGCTG
AAATTATCACACCTCAACTTGTTCCATGGATTTCTGTTGCCAGTGGTAAGGGCTTAAAAT
TACCGAGCTTATTTATCAAAAACTACTCTCACAAATCCTTTGTGTGTTACTTAGTTCAAG
CTGTTTTCCATTGGGCAGTGTAGCAAGCTTCCAAGTCATCAAGACCATCAATAACCCAGT
TTTCTTTTCAGGTTCTTCAATATAAAGCAATCCTCAACGGTGTAGGCAACCAGGAAGTGA
CAGCCACCCTCACACCTCTAACAGCACTAGTGACCAACTTGAAAAACTAATTATTTAGAT
ACCATTGTAGTAAATGCGAACTCAGGAGTGGAAAACCAATCTATTGTTTAGTGCAAAATT
ACAGAGTTTTTTCGTAAGATGTGAAAACCATACATTAAATACTTCATTTGCAAATCCTCC
ATTAATTGTCTCAAACTTCATCGTCTTTCATAGCTATTACGATTACTCTCTGTTTACATT
TTCGTTCTCTTCGATTCGACCTCAACCTTCTGCTGCCAGGCATTCCACTTCTAACTGATG
TTACATTAGTTTTGTCGACATGAGCAGTATATACCACATTATAATAAAGAATCTAAGCGT
GATTTATCTGAGGTATCATTTTACTGACTAGCTAACAGT

consensusID : consensus_8277#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 258
fasta sequence

                              [CAATTTATTATCTAATGCAAAATTAGAGTTCTTTGGTAAAATATGAAAACCATACATTAAATACTTCATTTGCAAATCTTCCATTAATTGTCCTTTACATGCTTTGTGGTTCTTCCACTTCTCAATTCCTTTCTGTTTTTTCTTCAGTTCAATCTTCTCAACCTTCTTCTGACAGGCCTTCCACCTCCAATCGGTGTTACATACTACTTATATCTGTCAGTGTAAGTAGCATACACAACGCTGGCATCACATCGTCAG]

[+] EMBL CD075076             [CAATTTATTATCTAATGCAAAATTAGAGTTCTTTGGTAAAATATGAAAACCATACATTAAATACTTCATTTGCAAATCTTCCATTAATTGTCCTTTACATGCTTTGTGGTTCTTCCACTTCTCAATTCCTTTCTGTTTTTTCTTCAGTTCAATCTTCTCAACCTTCTTCTGACAGGCCTTCCACCTCCAATCGGTGTTACATACTACTTATATCTGTCAGTGTAAGTAGCATACACAACGCTGGCATCACATCGTCA ]
[-] EMBL CD081246             [ AATTTATTATTTAATGCAAAATTAGAGTTCTTTGGTAAAATATGAAAACCATCCATTAAATACTTCATTTGCAAATCTTCCATTAATTGCCCTCCACATGCTTTGTGGTTCTTCCACTTCTCAATTCCTTTTTGTTTTTTGTTCAGTTCAATCTTCTCAACCTTCTTATGACAGGCCTTCCACCTCCAATCGGTGTTACATACTACTTATATCTGTCAGTGTAAGTAGCATACACAACGCTGGCATCACATCGTCAG]




>consensus_8277#1
CAATTTATTATCTAATGCAAAATTAGAGTTCTTTGGTAAAATATGAAAACCATACATTAA
ATACTTCATTTGCAAATCTTCCATTAATTGTCCTTTACATGCTTTGTGGTTCTTCCACTT
CTCAATTCCTTTCTGTTTTTTCTTCAGTTCAATCTTCTCAACCTTCTTCTGACAGGCCTT
CCACCTCCAATCGGTGTTACATACTACTTATATCTGTCAGTGTAAGTAGCATACACAACG
CTGGCATCACATCGTCAG

consensusID : consensus_8277#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 173
fasta sequence

                              [ACAATTGAAGGAAGATTTGTAAATGAAGTATTTAATGTATGGTTTTCACATTTTACGAAAGAACTCTGTAAATTGGTTATCTCCATTTGAGTTCTTGTTCACTATGGCATTATTAACAATGAATGTAGTATAAAAGACGTTCAAAAGCCTGCATTTGTTTACTGAACTACATA]

[+] EMBL CD179162             [ACAATTGAAGGAAGATTTGTAAATGAAGTATTTAATGTATGGTTTTCACATTTTACGAAAGAACTCTGTAAATTGGTTATCTCCATTTGAGTTCTTGTTCACTATGGCATTATTAACAATGAATGTAGTATAAAAGACGTTCAAAAGCCTGCATTTGTTTACTGAACTACATA]




>consensus_8277#2
ACAATTGAAGGAAGATTTGTAAATGAAGTATTTAATGTATGGTTTTCACATTTTACGAAA
GAACTCTGTAAATTGGTTATCTCCATTTGAGTTCTTGTTCACTATGGCATTATTAACAAT
GAATGTAGTATAAAAGACGTTCAAAAGCCTGCATTTGTTTACTGAACTACATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8277#0      CCGAACTCATGACTCAAGGATGAAGTTTTATCTGCAACTGTTTAAGGGTGTAACAGCCAG 60
consensus_8277#1      ------------------------------------------------------------
consensus_8277#2      ------------------------------------------------------------
                                                                                  

consensus_8277#0      TATTTATAGCGATACTAACTTTCCACAGAGAAAGCAAGTAATTGAAGAAAGTTAATGCTG 120
consensus_8277#1      ------------------------------------------------------------
consensus_8277#2      ------------------------------------------------------------
                                                                                  

consensus_8277#0      AAATTATCACACCTCAACTTGTTCCATGGATTTCTGTTGCCAGTGGTAAGGGCTTAAAAT 180
consensus_8277#1      ------------------------------------------------------------
consensus_8277#2      ------------------------------------------------------------
                                                                                  

consensus_8277#0      TACCGAGCTTATTTATCAAAAACTACTCTCACAAATCCTTTGTGTGTTACTTAGTTCAAG 240
consensus_8277#1      ------------------------------------------------------------
consensus_8277#2      ------------------------------------------------------------
                                                                                  

consensus_8277#0      CTGTTTTCCATTGGGCAGTGTAGCAAGCTTCCAAGTCATCAAGACCATCAATAACCCAGT 300
consensus_8277#1      ------------------------------------------------------------
consensus_8277#2      ------------------------------------------------------------
                                                                                  

consensus_8277#0      TTTCTTTTCAGGTTCTTCAATATAAAGCAATCCTCAACGGTGTAGGCAACCAGGAAGTGA 360
consensus_8277#1      ------------------------------------------------------------
consensus_8277#2      ------------------------------------------------------------
                                                                                  

consensus_8277#0      CAGCCACCCTCACACCTCTAACAGCACTAGTGACCAACTTGAAAAACTAATTATTTAGAT 420
consensus_8277#1      ------------------------------------------------------------
consensus_8277#2      ------------------------------------------------------------
                                                                                  

consensus_8277#0      ACCATTGTAGTAAATGCGAACTCAGGAGTGGAAAACCAATCTATTGTTTAGTGCAAAATT 480
consensus_8277#1      ------------------------------------CAATTTATTATCTAATGCAAAATT 24
consensus_8277#2      ------------------------------------------------------------
                                                                                  

consensus_8277#0      ACAGAGTTTTTTCGTAAGATGTGAAAACCATACATTAAATACTTCATTTGCAAATCCTCC 540
consensus_8277#1      --AGAGTTCTTTGGTAAAATATGAAAACCATACATTAAATACTTCATTTGCAAATCTTCC 82
consensus_8277#2      ----ACAATTGAAGGAAGATTTGTAAATGAAGTATTTAATGTATGGTTTTCACATTTTAC 56
                          *    *   * ** ** ** ***  *   *** ***   *  *** ** **  * *

consensus_8277#0      ATTAATTGTCTCAAACTT-CATCGTCTTTCATAGCTATTACGATTACTCTCTGTTTACAT 599
consensus_8277#1      ATTAATTGTCCTTTACATGCTTTGTGGTTCTTCCACTTCTCAATTCCTTTCTGT-----T 137
consensus_8277#2      GAAAGAACTCTGTAAATT--------GGTTATCTCCATTTGAGTTCTTGTTCACTATGGC 108
                         *    **    *  *          *  *     *     **  * *          

consensus_8277#0      TTTCGTTCTCTTCGATTCGACCTCAACCTTCTGCTGCCAGGCATTCCACTTCTAACTGAT 659
consensus_8277#1      TTTTCTTCAGTTCAATCT--TCTCAACCTTCTTCTGACAGGCCTTCCACCTCCAATCGGT 195
consensus_8277#2      ATTATTAACAATGAATGTAGTATAAAAGACGTTC--AAAAGCCTGCATTTGTTTACTGA- 165
                       **  *     *  **      * **     * *    * ** * *        *  *  

consensus_8277#0      GTTACAT------TAGTTTTGTCGACATGAGCAGTATATACCACATTATAATAAAGAATC 713
consensus_8277#1      GTTACATACTACTTATATCTGTCAGTGTAAGTAGCATACACAACGCTGGCATCACATCGT 255
consensus_8277#2      ACTACATA---------------------------------------------------- 173
                        *****                                                     

consensus_8277#0      TAAGCGTGATTTATCTGAGGTATCATTTTACTGACTAGCTAACAGT 759
consensus_8277#1      CAG------------------------------------------- 258
consensus_8277#2      ----------------------------------------------