These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8284#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 701 fasta sequence [AAAAAGATAGAACTGGTATATATGAAGCTGTAGCAACAAATCCATTAGGTAGTTGTTCTACCACTGTATATATGGAAATACTTCCATCCATACGAACATCTATTGATTTATTGCCAACAATTTCACCCGTGATGAGTGGAAGTTCACCGGAATTTACACGGATATTTAAAGATGTTTACATTGAATCAGAACGTTTGGAAGAAGTAGTACTTGAATGTTCGGTAGTTGGTGTTCCAACACCAGTAGTATATTGGACACATAATGGAATAATTATCAGACCGGATGATCAACGTTATGCTATTGGTCAAGGACCTGGACCTAATGATCATTGTTTAATTATTCGACGACCAGGACCAGAATCATCAGGTCGTTATCAAGCTATAGCTGAAAATCTTCATGGAAGAGTTACATGTTCAGCACTTATAAGTCCTATTGGTTATAGTCAAACAATAATTAAAAGACCTCCATCTACGATGAGTTTAACAAGGCATACAGTTACACGACAAATATGTCCTCGTGAAACATCATTACCTCCATCACCGGCAAGTACAGCTCCAATCATTTCACCACAATCATTGGCTACAGTTCAATTATCTTTATCACCAGTACGATTTCAAAGAGAAACATCGGCTCCACCATCACAATATTACTTGACAAGACATCATTTACAAATAAGACCAAGACAGCCGACACCACCAATT] [-] EMBL CD178568 [AAAAAGATAGAACTGGTATATATGAAGCTGTAGCAACAAATCCATTAGGTAGTTGTTCTACCACTGTATATATGGAAATACTTCCATCCATACGAACATCTATTGATTTATTGCCAACAATTTCACCCGTGATGAGTGGAAGTTCACCGGAATTTACACGGATATTTAAAGATGTTTACATTGAATCAGAACGTTTGGAAGAAGTAGTACTTGAATGTTCGGTAGTTGGTGTTCCAACACCAGTAGTATATTGGACACATAATGGAATAATTATCAGACCGGATGATCAACGTTATGCTATTGGTCAAGGACCTGGACCTAATGATCATTGTTTAATTATTCGACGACCAGGACCAGAATCATCAGGTCGTTATCAAGCTATAGCTGAAAATCTTCATGGAAGAGTTACATGTTCAGCACTTATAAGTCCTATTGGTTATAGTCAAACAATA ] [+] EMBL CD121914 [ TGTAGCAACAAATCCATTAGGTAGTTGTTCTACCACTGTATATATGGAAATACTTCCATCCATACGAACATCTATTGATTTATTGCCAACAATTTCACCCGTGATGAGTGGAAGTTCACCGGAATTTACACGGATATTTAAAGATGTTTACATTGAATCAGAACGTTTGGAAGAAGTAGTACTTGAATGTTCGGTAGTTGGTGTTCCAACACCAGTAGTATATTGGACACATAATGGAATAATTATCAGACCGGATGATCAACGTTATGCTATTGGTCAAGGACCTGGACCTAATGATCATTGTTTAATTATTCGACGACCAGGACCAGAATCATCAGGTCGTTATCAAGCTATAGCTGAAAATCTTCATGGAAGAGTTACATGTTCAGCACTTATAAGTCCTATTGGTTATAGTCAAACA ] [+] EMBL CD121977 [ TGTAGCAACAAATCCATTAGGTAGTTGTTCTACCACTGTATATATGGAAATACTTCCATCCATACGAACATCTATTGATTTATTGCCAACAATTTCACCCGTGATGAGTGGAAGTTCACCGGAATTTACACGGATATTTAAAGATGTTTACATTGAATCAGAACGTTTGGAAGAAGTAGTACTTGAATGTTCGGTAGTTGGTGTTCCAACACCAGTAGTATATTGGACACATAATGGAATAATTATCAGACCGGATGATCAACGTTATGCTATTGGTCAAGGACCTGGACCTAATGATCATTGTTTAATTATTCGACGACCAGGACCAGAATCATCAGGTCGTTATCAAGCTATAGCTGAAAATCTTCATGGAAGAGTTACATGTTCAGCACTTATAAGTCCTATTGGTT ] [+] EMBL CD166416 [ TATATTGGACACATAATGGAATAATTATCAGACCGGATGATCAACGTTATGCTATTGGTCAAGGACCTGGACCTAATGATCATTGTTTAATTATTCGACGACCAGGACCAGAATCATCAGGTCGTTATCAAGCTATAGCTGAAAATCTTCATGGAAGAGTTACATGCTCAGCACTTATAAGTCCTATTGGTTATAGTCAAACAATAATTAAAAGACCTCCATCTACGATGAGTTTAACAAGGCATACAGTTACACGACAAATATGTCCTCGTGAAACATCATTACCTCCATCACCGGCAAGTACAGCTCCAATCATTTCACCACAATCATTGGCTACAGTTCAATTATCTTTATCACCAGTACGATTTCAAAGAGAAACATCGGCTCCACCATCACAATATTACTTGACAAGACATCATTTACAAATAAGACCAAGACAGCCGACACCACCAATT] [+] EMBL CD189590 [ TCATTGTTTAATTATTCGACGACCAGGACCAGAATCATCAGGTCGTTATCAAGCTATAGCTGAAAATCTTCATGGAAGAGTTACATGTTCAGCACTTATAAGTCCTATTGGTTATAGTCAAACAATAATTAAAAGACCTCCATCTACGATGAGTTTAACAAGGCATACAGTTACACGACAAATATGTCCTCGTGAAACATCATTACCTCCATCACCGGCAAGTACAGCTCCAATCATTTCACCACAATCATTGGCTACAGTTCAATTATCTTTATCACCAGTACGATTTCAAAGAGAAACATCGGCTCCACCATCACAATATTACTTGACAAGACATCATTT ] consensusID : consensus_8284#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence [GAATAATTATCAGACCGGATGATCAACGTTATGCTATTGTGCAAGGACCTGGACCTAATGATCATTGTTTAATTATTCGACGACCAGGACCAGAATCATCAGGTCGTTATCAAGCTATAGCTGAAAATCTTCATGGAAGAGTTACATGTTCAGCACTTATAAGTCCTATTGGTTATAGTCAAACAATAATTAAAAGACCTCCATCTACGATGAGTTTAACAAGGCATACAGTTACACGACAAATATGTCCTCGTGAAACATCATTACCTCCATCACCGGCAAGTACAGCTCCAATCATTTCTTCAGCACAGGTGAC] [-] EMBL CD121800 [GAATAATTATCAGACCGGATGATCAACGTTATGCTATTGTGCAAGGACCTGGACCTAATGATCATTGTTTAATTATTCGACGACCAGGACCAGAATCATCAGGTCGTTATCAAGCTATAGCTGAAAATCTTCATGGAAGAGTTACATGTTCAGCACTTATAAGTCCTATTGGTTATAGTCAAACAATAATTAAAAGACCTCCATCTACGATGAGTTTAACAAGGCATACAGTTACACGACAAATATGTCCTCGTGAAACATCATTACCTCCATCACCGGCAAGTACAGCTCCAATCATTTCTTCAGCACAGGTGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8284#0 AAAAAGATAGAACTGGTATATATGAAGCTGTAGCAACAAATCCATTAGGTAGTTGTTCTA 60 consensus_8284#1 ------------------------------------------------------------ consensus_8284#0 CCACTGTATATATGGAAATACTTCCATCCATACGAACATCTATTGATTTATTGCCAACAA 120 consensus_8284#1 ------------------------------------------------------------ consensus_8284#0 TTTCACCCGTGATGAGTGGAAGTTCACCGGAATTTACACGGATATTTAAAGATGTTTACA 180 consensus_8284#1 ------------------------------------------------------------ consensus_8284#0 TTGAATCAGAACGTTTGGAAGAAGTAGTACTTGAATGTTCGGTAGTTGGTGTTCCAACAC 240 consensus_8284#1 ------------------------------------------------------------ consensus_8284#0 CAGTAGTATATTGGACACATAATGGAATAATTATCAGACCGGATGATCAACGTTATGCTA 300 consensus_8284#1 ------------------------GAATAATTATCAGACCGGATGATCAACGTTATGCTA 36 ************************************ consensus_8284#0 TTGGTCAAGGACCTGGACCTAATGATCATTGTTTAATTATTCGACGACCAGGACCAGAAT 360 consensus_8284#1 TTGTGCAAGGACCTGGACCTAATGATCATTGTTTAATTATTCGACGACCAGGACCAGAAT 96 *** ******************************************************* consensus_8284#0 CATCAGGTCGTTATCAAGCTATAGCTGAAAATCTTCATGGAAGAGTTACATGTTCAGCAC 420 consensus_8284#1 CATCAGGTCGTTATCAAGCTATAGCTGAAAATCTTCATGGAAGAGTTACATGTTCAGCAC 156 ************************************************************ consensus_8284#0 TTATAAGTCCTATTGGTTATAGTCAAACAATAATTAAAAGACCTCCATCTACGATGAGTT 480 consensus_8284#1 TTATAAGTCCTATTGGTTATAGTCAAACAATAATTAAAAGACCTCCATCTACGATGAGTT 216 ************************************************************ consensus_8284#0 TAACAAGGCATACAGTTACACGACAAATATGTCCTCGTGAAACATCATTACCTCCATCAC 540 consensus_8284#1 TAACAAGGCATACAGTTACACGACAAATATGTCCTCGTGAAACATCATTACCTCCATCAC 276 ************************************************************ consensus_8284#0 CGGCAAGTACAGCTCCAATCATTTCACCACAATCATTGGCTACAGTTCAATTATCTTTAT 600 consensus_8284#1 CGGCAAGTACAGCTCCAATCATTTCTTCAGCACAGGTGAC-------------------- 316 ************************* ** * ** * consensus_8284#0 CACCAGTACGATTTCAAAGAGAAACATCGGCTCCACCATCACAATATTACTTGACAAGAC 660 consensus_8284#1 ------------------------------------------------------------ consensus_8284#0 ATCATTTACAAATAAGACCAAGACAGCCGACACCACCAATT 701 consensus_8284#1 ----------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||