cluster # 8289

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Schistosoma mansoni
cluster # 8289 cluster # 8289 Sequences # 6 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8289#0 length = 578 sequences # 1
consensus_8289#1 length = 406 sequences # 2

consensus_8289#2 length = 377 sequences # 1
consensus_8289#3 length = 302 sequences # 1
consensus_8289#4 length = 272 sequences # 1

consensusID : consensus_8289#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 578
fasta sequence

                              [AACGAGGATCGATAATTACTCTAGTCCTTACTGATTCTTCTTACCTTGCTCTGCTCGTCGAGTCAAGAACACAACCACAGCTTCAATTAAATGAATCATGTGTTTCAGAGATATGCAGTTTATATGCAAGCAAATCAGGCCGCATCATATCATCAAATAAAAAATAACAAATATACAACATCAAGGTAAAATTGACGTTAGTTATGTCCATAACTAACCAATCAAATCGCTACTCAATCGCCCATCACGTCAACCCGGTCTGATGTGCCTATAGACCGTCGCTGTTGTGTGTGACCTGCAATTTGAAGGACATTGTTATCTTATCATATTAGTGTGACTGCAACTCATATGTTTTAATTCATTTCGATAAGACACGCAATACTGATCGGTATGTTGGTGAGTTCCACTTAATGACTATAATTCCTTTAATTATTGTACTAATCTAACTGTTTTTACATATAAAGCCGAGTTGTTCTTCTTCTGACTACAACTTAGTTCACATAGAGTCTGGGGTTGTCAGTATCGCGTTCACAATACTGGTCATATGTCTGTCGAGCAAATTANATCTTAGAAATGAC]

[+] EMBL CD071574             [AACGAGGATCGATAATTACTCTAGTCCTTACTGATTCTTCTTACCTTGCTCTGCTCGTCGAGTCAAGAACACAACCACAGCTTCAATTAAATGAATCATGTGTTTCAGAGATATGCAGTTTATATGCAAGCAAATCAGGCCGCATCATATCATCAAATAAAAAATAACAAATATACAACATCAAGGTAAAATTGACGTTAGTTATGTCCATAACTAACCAATCAAATCGCTACTCAATCGCCCATCACGTCAACCCGGTCTGATGTGCCTATAGACCGTCGCTGTTGTGTGTGACCTGCAATTTGAAGGACATTGTTATCTTATCATATTAGTGTGACTGCAACTCATATGTTTTAATTCATTTCGATAAGACACGCAATACTGATCGGTATGTTGGTGAGTTCCACTTAATGACTATAATTCCTTTAATTATTGTACTAATCTAACTGTTTTTACATATAAAGCCGAGTTGTTCTTCTTCTGACTACAACTTAGTTCACATAGAGTCTGGGGTTGTCAGTATCGCGTTCACAATACTGGTCATATGTCTGTCGAGCAAATTANATCTTAGAAATGAC]




>consensus_8289#0
AACGAGGATCGATAATTACTCTAGTCCTTACTGATTCTTCTTACCTTGCTCTGCTCGTCG
AGTCAAGAACACAACCACAGCTTCAATTAAATGAATCATGTGTTTCAGAGATATGCAGTT
TATATGCAAGCAAATCAGGCCGCATCATATCATCAAATAAAAAATAACAAATATACAACA
TCAAGGTAAAATTGACGTTAGTTATGTCCATAACTAACCAATCAAATCGCTACTCAATCG
CCCATCACGTCAACCCGGTCTGATGTGCCTATAGACCGTCGCTGTTGTGTGTGACCTGCA
ATTTGAAGGACATTGTTATCTTATCATATTAGTGTGACTGCAACTCATATGTTTTAATTC
ATTTCGATAAGACACGCAATACTGATCGGTATGTTGGTGAGTTCCACTTAATGACTATAA
TTCCTTTAATTATTGTACTAATCTAACTGTTTTTACATATAAAGCCGAGTTGTTCTTCTT
CTGACTACAACTTAGTTCACATAGAGTCTGGGGTTGTCAGTATCGCGTTCACAATACTGG
TCATATGTCTGTCGAGCAAATTANATCTTAGAAATGAC

consensusID : consensus_8289#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 406
fasta sequence

                              [ATTCTCATGTGGGTAGAGACATGAGGAAGAATCGACAACCGGGAGATTCGGTGTTAGTAAACAATACTGGCTCACCGAGAAATCTGTGGCCGAAAGCTATAGTTAGACAGGTCAATTATGGTCCAGATGGACGAGTCAGAACAGTTCGACTGAAGACAGTAACCGAAGAGATCAGCCGGGATATACGGAACCTGTGCCTACTGGAAGAGGCCGATTGTTTGAGCGCGACAGTAGAGAAGCCTGAATGTGGTGTCCGCTTGGGGGGGAATGTTAGTTATGTCCATAACTAACCAATCAAATTGTTGCTTAAGCTCCCACCACGTCAATCTGGTCTGACGTGTCTGTAAACTATCCCTGTTGCATGTGACTTACCAATTGAAAGACATTATTATCCTATTATATTAGT]

[+] EMBL CD090380             [ATTCTCATGTGGGTAGAGACATGAGGAAGAATCGACAACCGGGAGATTCGGTGTTAGTAAACAATACTGGCTCACCGAGAAATCTGTGGCCGAAAGCTATAGTTAGACAGGTCAATTATGGTCCAGATGGACGAGTCAGAACAGTTCGACTGAAGACAGTAACCGAAGAGATCAGCCGGGATATACGGAACCTGTGCCTACTGGAAGAGGCCGATTGTTTGAGCGCGACAGTAGAGAAGCCTGAATGTGGTGTCCGCTTGGGGGGGAATGTTAGTTATGTCCATAACTAACCAATCAAATTGTTGCTTAAGCTCCCACCACGTCAATCTGGTCTGACGTGTCT                                                               ]
[+] EMBL CD093223             [                                                                                                                                                                                               CTGTGCCTACTGGAAGAGGCCGATTGTTTGAGCGCGACAGTAGAGAAGCCTGAATGTGGTGTCCGCTTGGGGGGGAATGTTAGTTATGTCCATAACTAACCAATCAAATTGTTGCTTAAGCTCCCACCACGTCAATCTGGTCTGATGTGTCTGTAAACTATCCCTGTTGCATGTGACTTACCAATTGAAAGACATTATTATCCTATTATATTAGT]




>consensus_8289#1
ATTCTCATGTGGGTAGAGACATGAGGAAGAATCGACAACCGGGAGATTCGGTGTTAGTAA
ACAATACTGGCTCACCGAGAAATCTGTGGCCGAAAGCTATAGTTAGACAGGTCAATTATG
GTCCAGATGGACGAGTCAGAACAGTTCGACTGAAGACAGTAACCGAAGAGATCAGCCGGG
ATATACGGAACCTGTGCCTACTGGAAGAGGCCGATTGTTTGAGCGCGACAGTAGAGAAGC
CTGAATGTGGTGTCCGCTTGGGGGGGAATGTTAGTTATGTCCATAACTAACCAATCAAAT
TGTTGCTTAAGCTCCCACCACGTCAATCTGGTCTGACGTGTCTGTAAACTATCCCTGTTG
CATGTGACTTACCAATTGAAAGACATTATTATCCTATTATATTAGT

consensusID : consensus_8289#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence

                              [GTAATCGTTGTTTATAACTTCTGTTAGTTATGTCCATAACTAACCAATCAAATTGTTGCTTAAGCTCCCACCATGTCAATCTGGTCTAGTATGTCTGTAGACTATCTCTATTGCATGTGACTCGCCTATTGAAGGACTCATAATTTTTATTGATTTCGATAAGACACGCAATACTGATCGGTATGTTAGTGAGTTCCACCTAATGACTATAATTCCTTTAATTATTGTACTAATCGAATTGTTATTTTTATGTTTAGAAACAGACAAATTTTAAAGTCAAGTTGTCCTTGTTTTGACTATAGCTTTCACATAGGCTCTGGGGTCGCCGGTATCACGTTTACAGTTCTAGTAGTATATCCGTAGAACAATTAAATATT]

[-] EMBL CD126193             [GTAATCGTTGTTTATAACTTCTGTTAGTTATGTCCATAACTAACCAATCAAATTGTTGCTTAAGCTCCCACCATGTCAATCTGGTCTAGTATGTCTGTAGACTATCTCTATTGCATGTGACTCGCCTATTGAAGGACTCATAATTTTTATTGATTTCGATAAGACACGCAATACTGATCGGTATGTTAGTGAGTTCCACCTAATGACTATAATTCCTTTAATTATTGTACTAATCGAATTGTTATTTTTATGTTTAGAAACAGACAAATTTTAAAGTCAAGTTGTCCTTGTTTTGACTATAGCTTTCACATAGGCTCTGGGGTCGCCGGTATCACGTTTACAGTTCTAGTAGTATATCCGTAGAACAATTAAATATT]




>consensus_8289#2
GTAATCGTTGTTTATAACTTCTGTTAGTTATGTCCATAACTAACCAATCAAATTGTTGCT
TAAGCTCCCACCATGTCAATCTGGTCTAGTATGTCTGTAGACTATCTCTATTGCATGTGA
CTCGCCTATTGAAGGACTCATAATTTTTATTGATTTCGATAAGACACGCAATACTGATCG
GTATGTTAGTGAGTTCCACCTAATGACTATAATTCCTTTAATTATTGTACTAATCGAATT
GTTATTTTTATGTTTAGAAACAGACAAATTTTAAAGTCAAGTTGTCCTTGTTTTGACTAT
AGCTTTCACATAGGCTCTGGGGTCGCCGGTATCACGTTTACAGTTCTAGTAGTATATCCG
TAGAACAATTAAATATT

consensusID : consensus_8289#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 302
fasta sequence

                              [GGGATGTCAGTAATGCCCTTAATTACCCAATCAAATTGTTGCTTAACTTCCCACCACGTCAATGTGGTCTGATGTGTCTGTAAACTATCCCTGTTGCATGTGACTTACCAAGTGAAAGACATTATTATCCTATTATATTAGTGTGACTCATAAATTTTATTCATTTTATTAAGACACGCAATACTGGTCGGTATGTTTGTGCGTTTCACTTAATGACTGTAATTCTTTAATTATTGTACTAATCTAATCGTTTTTTATGTTTAGAAACAGATAAAGTTTAAAGCCAAAAAAAAAAAAAAAAA]

[-] EMBL AI395378             [GGGATGTCAGTAATGCCCTTAATTACCCAATCAAATTGTTGCTTAACTTCCCACCACGTCAATGTGGTCTGATGTGTCTGTAAACTATCCCTGTTGCATGTGACTTACCAAGTGAAAGACATTATTATCCTATTATATTAGTGTGACTCATAAATTTTATTCATTTTATTAAGACACGCAATACTGGTCGGTATGTTTGTGCGTTTCACTTAATGACTGTAATTCTTTAATTATTGTACTAATCTAATCGTTTTTTATGTTTAGAAACAGATAAAGTTTAAAGCCAAAAAAAAAAAAAAAAA]




>consensus_8289#3
GGGATGTCAGTAATGCCCTTAATTACCCAATCAAATTGTTGCTTAACTTCCCACCACGTC
AATGTGGTCTGATGTGTCTGTAAACTATCCCTGTTGCATGTGACTTACCAAGTGAAAGAC
ATTATTATCCTATTATATTAGTGTGACTCATAAATTTTATTCATTTTATTAAGACACGCA
ATACTGGTCGGTATGTTTGTGCGTTTCACTTAATGACTGTAATTCTTTAATTATTGTACT
AATCTAATCGTTTTTTATGTTTAGAAACAGATAAAGTTTAAAGCCAAAAAAAAAAAAAAA
AA

consensusID : consensus_8289#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence

                              [TGATTGGTTAGTTATGAACATAACTAACATTCCCCCCCAAGCGGACACCACGTCCAGGCTTCATTACTGTCGCGTCTATATAATCGGCTTCTCCAAAGAGACAGGTTCCGTATATCCCGGCTGATCTCTTCAGTTGCTGTCTTCAGTCGAACTGTTCTGACTCGTCCATCTGGACCATAATTGACCTGTCTAACTATCGCTTTCGGCCACAGATTTCTCGGTGAGCCAGTATTGTTTACTAACACCGAATCTCCCGGGTGTCGATTCTTTCT]

[+] EMBL CD066765             [TGATTGGTTAGTTATGAACATAACTAACATTCCCCCCCAAGCGGACACCACGTCCAGGCTTCATTACTGTCGCGTCTATATAATCGGCTTCTCCAAAGAGACAGGTTCCGTATATCCCGGCTGATCTCTTCAGTTGCTGTCTTCAGTCGAACTGTTCTGACTCGTCCATCTGGACCATAATTGACCTGTCTAACTATCGCTTTCGGCCACAGATTTCTCGGTGAGCCAGTATTGTTTACTAACACCGAATCTCCCGGGTGTCGATTCTTTCT]




>consensus_8289#4
TGATTGGTTAGTTATGAACATAACTAACATTCCCCCCCAAGCGGACACCACGTCCAGGCT
TCATTACTGTCGCGTCTATATAATCGGCTTCTCCAAAGAGACAGGTTCCGTATATCCCGG
CTGATCTCTTCAGTTGCTGTCTTCAGTCGAACTGTTCTGACTCGTCCATCTGGACCATAA
TTGACCTGTCTAACTATCGCTTTCGGCCACAGATTTCTCGGTGAGCCAGTATTGTTTACT
AACACCGAATCTCCCGGGTGTCGATTCTTTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8289#0      AACGAGGATCGATAATTACTCTAGTCCTTACTGATTCTTCTTACCTTGCTCTGCTCGTCG 60
consensus_8289#2      ------------------------------------------------------------
consensus_8289#3      ------------------------------------------------------------
consensus_8289#1      ------------------------------------------------------------
consensus_8289#4      ------------------------------------------------------------
                                                                                  

consensus_8289#0      AGTCAAGAACACAACCACAGCTTCAATTAAATGAATCATGTGTTTCAGAGATATGCAGTT 120
consensus_8289#2      ------------------------------------------------------------
consensus_8289#3      ------------------------------------------------------------
consensus_8289#1      ------------------------------------------------------------
consensus_8289#4      ------------------------------------------------------------
                                                                                  

consensus_8289#0      TATATGCAAGCAAATCAGGCCGCATCATATCATCAAATAAAAAATAACAAATATACAACA 180
consensus_8289#2      ------------------------------------------------------GTAATC 6
consensus_8289#3      ------------------------------------------------------------
consensus_8289#1      -----------------------ATTCTCATGTGGGTAGAGACATGAGGAAGAATCGACA 37
consensus_8289#4      ------------------------------------------------------------
                                                                                  

consensus_8289#0      TCAAGGTAAAATTGACGTTAGTTA-TGTCCATAACTAACCAATCAAATCGCTACTCAA-T 238
consensus_8289#2      GTTGTTTATAACTTCTGTTAGTTA-TGTCCATAACTAACCAATCAAATTGTTGCTTAA-G 64
consensus_8289#3      -----------GGGATGTCAGTAA-TGCCCTTAATTACCCAATCAAATTGTTGCTTAA-C 47
consensus_8289#1      ACCGGG-AGATTCGGTGTTAGTAAACAATACTGGCTCACCGAGAAATCTGTGGCCGAAAG 96
consensus_8289#4      ----------TGATTGGTTAGTTA-TGAACATAACTAAC--ATTCCCCCCCAAGCGGACA 47
                                      ** *** *       *   *  *  *               *  

consensus_8289#0      CGCCCATCACGTCAACCCGGTCTGATGTGCCTATA--GACCGTCGCTGTTGTGTGTGACC 296
consensus_8289#2      CTCCCACCATGTCAATCTGGTCTAGTATGTCTGTA--GACTATCTCTATTGCATGTGACT 122
consensus_8289#3      TTCCCACCACGTCAATGTGGTCTGATGTGTCTGTA--AACTATCCCTGTTGCATGTGACT 105
consensus_8289#1      CTATAGTTAGACAGGTCAATTATGGTCCAGATGGACGAGTCAGAACAGTTCGACTGAAGA 156
consensus_8289#4      CCACGTCCAGGCT--TCATTACTGTCGCGTCTATAT-AATCGGCTTCTCCAAA---GAGA 101
                              *             *        *  *                      *  

consensus_8289#0      TGCAATTTGAAGGACATTGTTATCTTATCATATTAGTGTGACTGCAACTCATATGTTTTA 356
consensus_8289#2      CGCCTATTGAAGGAC------------TCATA----------------------ATTTTT 148
consensus_8289#3      TACCAAGTGAAAGACATTATTATCCTATTATATTAGTGTGACTCATA-------AATTTT 158
consensus_8289#1      CAGTAACCGAAGAGATCAGCCG---GGATATACGGAACCTGTGCCTACTGGAAGAGGCCG 213
consensus_8289#4      CAGGTTCCGTATATCCCGGCTGATCTCTTCAGTTG--CTGTCTTCAGTCGAACTGTTCTG 159
                              * *                                                 

consensus_8289#0      ATTCATTTCGATAAGACACGCAATACTGATCGGTATGTTGGTGAGTTCCACTTAAT---- 412
consensus_8289#2      ATTGATTTCGATAAGACACGCAATACTGATCGGTATGTTAGTGAGTTCCACCTAAT---- 204
consensus_8289#3      ATTCATTTTATTAAGACACGCAATACTGGTCGGTATGTTTGTGCGTTTCACTTAAT---- 214
consensus_8289#1      ATT-GTTTGAGCGCGACAGTAGAGA--AGCCTGAATGT-GGTGTCCGCTTGGGGGG---- 265
consensus_8289#4      ACTCGTCCATCTGGACCATAATTGACCTGTCTAACTATCGCTTTCGGCCACAGATTTCTC 219
                      * *  *          **      *     *    * *   *                  

consensus_8289#0      -GACTATAATTCCTTTAATTATTGTACTAATCTAACTGTT-TTTACATAT---------- 460
consensus_8289#2      -GACTATAATTCCTTTAATTATTGTACTAATCGAATTGTTATTTTTATGTTTAGAAACAG 263
consensus_8289#3      -GACTGTAATTC-TTTAATTATTGTACTAATCTAATCGTT--TTTTATGTTTAGAAACAG 270
consensus_8289#1      -GAATGTTAGTTATGTCCATAACTAACCAATCAAATTGTTGCTTAAGCTCCCA------- 317
consensus_8289#4      GGTGAGCCAGTATTGTTTACTAACACCGAATCTCCCGGGTGTCGATTCTTTCT------- 272
                       *      * *  * *          * ****     * *                    

consensus_8289#0      ---------AAAGCCGAGTTGTTCTTCTTCTGACTACAACTTAGTTCACATAGAGTCTGG 511
consensus_8289#2      ACAAATTTTAAAGTCAAGTTGTCCTTGTTTTGACTATAGCTT---TCACATAGGCTCTGG 320
consensus_8289#3      ATAAAGTTTAAAGCCAAAAAAAAAAAAAAAAA---------------------------- 302
consensus_8289#1      --------CCACGTCAATCTGGTCT-GACGTGTCTGTAAACTA---TCCCTGTTGCATGT 365
consensus_8289#4      ------------------------------------------------------------
                                                                                  

consensus_8289#0      GGTTGTCAGTATCGCGTTCACAATACTGGTCATATGTCTGTCGAGCAAATTANATCTTAG 571
consensus_8289#2      GGTCGCCGGTATCACGTTTACAGTTCTAGTAGTATATCCGTAGAACAA-TTAAATATT-- 377
consensus_8289#3      ------------------------------------------------------------
consensus_8289#1      GACTTACCAATTGAAAGACATTATTATCCTATTATATTAGT------------------- 406
consensus_8289#4      ------------------------------------------------------------
                                                                                  

consensus_8289#0      AAATGAC 578
consensus_8289#2      -------
consensus_8289#3      -------
consensus_8289#1      -------
consensus_8289#4      -------