cluster # 8298

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Schistosoma mansoni
cluster # 8298 cluster # 8298 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8298#0 length = 1339 sequences # 5

consensus_8298#1 length = 466 sequences # 1

consensusID : consensus_8298#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1339
fasta sequence

                              [CTGTTAATACTACTACCATTATTATTATTGGTAGTACTAGTAGTAATAGCCGATACAGGGACAGCTTTACCGGGTGAAACTAAATTTGGATCCAGATAACCAACCATAGATTCAGTACTGATAGCTTTTAAAATTCTATAATCGAATATAGGATCTGGAACAATTATGCTTTCTAAATCTCTTGAATTATCTGTATAATGACCATTAGAATAAGACAGAAGTATAGCGAAATGATGACTACTTCTAGCTAATTCATATAGACATAGCAAAAGTGAATCACATGGTCTTAAACTAATAATTGATGCAACATCACCGGAGACCAGAGTAGTGAAAAAAGATGAAAAAGAAGATAGAATACCACCAGAATTGTCACGTTGTTGTCCAAATTTTAAGTTAAATTCGGACAATGCGAGAGCGACAGTAGACAGTATACTCTGAAGGTAAGATAGTGAAGGAAATTTAATATTATTATCATGATTAGATCCTTGTTTTTGATGCGCTGGGTTGATCAGATGTAGGAAAAATGATAAGTGAGATACGAATGGTTGAAT-AAAATATTTCGCTTAACTTTCTAAGAAGACAAGAATACACTATTGGTTGAAAACGCGGCTTAATTATTCGAACGATATAGATATTTACGAATTGATCGTGCATGTATTTTCGACTCGGTTAGTCAATAATAAAGTTTCCTGCTCACTTTTAGTTTTCTCGTCCATGTGTCTAGTTGGACTTGGTTAGAGGAAGTTTGAATATCAGTAGCAGAATATGCATTTAACAACAGTTCATCTTCTGTCTGTTGAATTAATGTTTGAAATAAATTCAGTGAATCAGGTTCTGTATATTGTAATAGTAAACCAAGAAATCTGCATGCAGTGACACCATGATAATATCTTAATTGAGGATTGATCAATGTATTCATGATTAGGTCATAAATACGATCATCTAACAGAATAGGAATAAATGGATTTTTGTTCAAAGATGAAGTAACCGAAGCAAATGTCATCATTGAATTGAACATAAGACTACGAAGTAATTCTGGTTTATCTTCTCGGACTAGTTCAACGCATAGAGAAATGTAGTTCTCCATAAAATCTTTAACATACTCCGGTCCTAAGAGTATCGCACTTAGTTCCTCATTTACATTTGATGATCTACACTTGTGAACGCCACTCAGTAAACAATCTAATGTTTGAATAGCGTTGGCAACTCGGATGCGATGTCCATCATACTGAGCTGTTTGAAGGCATTGTATAAACAATCTGTTGAGCTGAGGCTTGAGTGATATCTTGTCCTTGAAACAGCTTATCATATACTTGAAGCACTTTCTCTTTAAGTGAAC]

[+] EMBL CD194767             [CTGTTAATACTACTACCATTATTATTATTGGTAGTACTAGTAGTAATAGCCGATACAGGGACAGCTTTACCGGGTGAAACTAAATTTGGATCCAGATAACCAACCATAGATTCAGTACTGATAGCTTTTAAAATTCTATAATCGAATATAGGATCTGGAACAATTATGCTTTCTAAATCTCTTGAATTATCTGTATAATGACCATTAGAATAAGACAGAAGTATAGCGAAATGATGACTACTTCTAGCTAATTCATATAGACATAGCAAAAGTGAATCACATGGTCTTAAACTAATAATTGATGCAACATCACCGGAGACCAGAGTAGTGAAAAAAGATGAAAAAGAAGATAGAATACCACCAGAATTGTCACGTTGTTGTCCAAATTTTAAGTTAAATTCGGACAATGCGAGAGCGACAGTAGACAGTATACTCTGAAGGTAAGATAGTGAAGGAAATTTAATATTATTATCATGATTAGATCCTTGTTTTTGATGCGCTGGGTTGATCAGATGTANGAAAAATGATAAGTGAGATACGAATGGTTGAATAAAAATATTcg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD169190             [                                                                                                                                                                                                                                                                                                                                                                 AATACCACCAGAATTGTCACGTTGTTGTCCAAATTTTAAGTTAAATTCGGACAATGCGAGAGCGACAGTAGACAGTATACTCTGAAGGTAAGATAGTGAAGGAAATTTAATATTATTATCATGATTAGATCCTTGTTTTTGATGCGCTGGGTTGATCAGATGTAGGAAAAATGATAAGTGAGATACGAATGGTTGAAT AAAATATTTCGCTTAACTTTCTAAGAAGACAAGAATACACTATTGGTTGAAAACGCGGCTTAATTATTCGAACGATATAGATATTTACGAATTGATCGTGCATGTATTTTCGACTCGGTTAGTCAATAATAAAGTTTCCTGCTCACTTTTAGTTTTCTCGTCCATGTGTCTAGTTGGACTTGGTTAGAGGAAGTTTGAATATCAGTAGCAGAATATGCATTTAACAACAGTTCATCTTCTGTCTGTTGAATTAATGTTTGAAATAAATTCAGTGAATCAGGTTCTGTATATTGTAATAGTAAACCAAGAAATCTGCATGCAGTGACACCATGATAATATCTTAATTGAGGATTGGTCAATGTATTCATGATTAGGTCATAAATACGATCATCTAACAGAATAGGAATAAATGGATTTTTG                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD169032             [                                                                                                                                                                                                                                                                                                                                                                    ACCACCAGAATTGTCACGTTGTTGTCCAAATTTTAAGTTAAATTCGGACAATGCGAGAGCGACAGTAGACAGTATACTCTGAAGGTAAGATAGTGAAGGAAATTTAATATTATTATCATGATTAGATCCTTGTTTTTGATGCGCTGGGTTGATCAGATGTAGGAAAAATGATAAGTGAGATACGAATGGTTGAAT AAAATATTTCGCTTAACTTTCTAAGAAGACAAGAATACACTATTGGTTGAAAACGCGGCTTAATTATTCGAACGATATAGATATTTACGAATTGATCGTGCATGTATTTTCGACTCGGTTAGTCAATAATAAAGTTTCCTGCTCACTTTTAGTTTTCTCGTCCATGTGTCTAGTTGGACTTGGTTAGAGGAAGTTTGAATATCAGTAGCAGAATATGCATTTAACAACAGTTCATCTTCTGTCTGTTGAATTAATGTTTGAAATAAATTCAGTGAATCAGGTTCTGTATATTGTAATAGTAAACCAAGAAATCTGCATGCAGTGACACCATGATAATATCTTAATTGAGGATTGATCAATGTATTCATGATTAGGTCATAAATACGATCATCTAACAGAATAGGAATAAATGGATTTTTGTTCAAAGATGAAGTAACCGAAGCANATGTCATCATTGAA                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD169101             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TAGTTGGACTTGGTTAGAGGAAGTTTGAATATCAGTAGCAGAATATGCATTTAACAACAGTTCATCTTCTGTCTGTTGAATTAATGTTTGAAATAAATTCAGTGAATCAGGTTCTGTATATTGTAATAGTAAACCAAGAAATCTGCATGCAGTGACACCATGATAATATCTTAATTGAGGATTGATCAATGTATTCATGATTAGGTCATAAATACGATCATCTAACAGAATAGGAATAAATGGATTTTTGTTCAAAGATGAAGTAACCGAAGCAAATGTCATCATTGAATTGAACATAAGACTACGAAGTAATTCTGGTTTATCTTCTCGGACTAGTTCAACGCATAGAGAAATGTAGTTCTCCATAAAATCTTTAACATACTCCGGTCCTAAGAGTATCGCACTTAGTTCCTCATTTACATTTGATGATCTACACTTGTGAACGCCACTCAGTAAACAATCTAATGTTTGAATAGCGTTGGCAACTCGGATGCGATGTCCATCATACTGAGCTGTTTGAAGGCATTGTATAAACAATCTGTTGAGCTGAGGCTTGAGTGATATCTTGTCCTTGAAACAGCTTATCATATACTTGAAGCACTTTCTCTTTAAGTGAAC]
[-] EMBL CD168987             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATATCAGTAGCAGAATATGCATTTAACAACAGTTCATCTTCTGTCTGTTGAATTAATGTTTGAAATAAATTCAGTGAATCAGGTTCTGTATATTGTAATAGTAAACCAAGAAATCTGCATGCAGTGACACCATGATAATATCTTAATTGAGGATTGATCAATGTATTCATGATTAGGTCATAAATACGATCATCTAACAGAATAGGAATAAATGGATTTTTGTTCAAAGATGAAGTAACCGAAGCAAATGTCATCATTGAATTGAACATAAGACTACGAAGTAATTCTGGTTTATCTTCTCGGACTAGTTCAACGCATAGAGAAATGTAGTTCTCCATAAAATCTTTAACATACTCCGGTCCTAAAAGTATCGCACTTAGTTCCTCATTTACATTTGATGATCTACACTTGTGAACGCCACTCAGTAAACAATCTAATGTTTGAATAGCGTTGGCAACTCGGATGCGATGTCCATCATACTGAGCCGTTTGAAGGCATTGTATAAACAATCTGTTGAGCTGAGGCTTGAGTGATATCTTGTCCTTGAAACAGCTTATCATATACTTGAAGCACTTTCTCTTTAAGTGAAC]




>consensus_8298#0
CTGTTAATACTACTACCATTATTATTATTGGTAGTACTAGTAGTAATAGCCGATACAGGG
ACAGCTTTACCGGGTGAAACTAAATTTGGATCCAGATAACCAACCATAGATTCAGTACTG
ATAGCTTTTAAAATTCTATAATCGAATATAGGATCTGGAACAATTATGCTTTCTAAATCT
CTTGAATTATCTGTATAATGACCATTAGAATAAGACAGAAGTATAGCGAAATGATGACTA
CTTCTAGCTAATTCATATAGACATAGCAAAAGTGAATCACATGGTCTTAAACTAATAATT
GATGCAACATCACCGGAGACCAGAGTAGTGAAAAAAGATGAAAAAGAAGATAGAATACCA
CCAGAATTGTCACGTTGTTGTCCAAATTTTAAGTTAAATTCGGACAATGCGAGAGCGACA
GTAGACAGTATACTCTGAAGGTAAGATAGTGAAGGAAATTTAATATTATTATCATGATTA
GATCCTTGTTTTTGATGCGCTGGGTTGATCAGATGTAGGAAAAATGATAAGTGAGATACG
AATGGTTGAATAAAATATTTCGCTTAACTTTCTAAGAAGACAAGAATACACTATTGGTTG
AAAACGCGGCTTAATTATTCGAACGATATAGATATTTACGAATTGATCGTGCATGTATTT
TCGACTCGGTTAGTCAATAATAAAGTTTCCTGCTCACTTTTAGTTTTCTCGTCCATGTGT
CTAGTTGGACTTGGTTAGAGGAAGTTTGAATATCAGTAGCAGAATATGCATTTAACAACA
GTTCATCTTCTGTCTGTTGAATTAATGTTTGAAATAAATTCAGTGAATCAGGTTCTGTAT
ATTGTAATAGTAAACCAAGAAATCTGCATGCAGTGACACCATGATAATATCTTAATTGAG
GATTGATCAATGTATTCATGATTAGGTCATAAATACGATCATCTAACAGAATAGGAATAA
ATGGATTTTTGTTCAAAGATGAAGTAACCGAAGCAAATGTCATCATTGAATTGAACATAA
GACTACGAAGTAATTCTGGTTTATCTTCTCGGACTAGTTCAACGCATAGAGAAATGTAGT
TCTCCATAAAATCTTTAACATACTCCGGTCCTAAGAGTATCGCACTTAGTTCCTCATTTA
CATTTGATGATCTACACTTGTGAACGCCACTCAGTAAACAATCTAATGTTTGAATAGCGT
TGGCAACTCGGATGCGATGTCCATCATACTGAGCTGTTTGAAGGCATTGTATAAACAATC
TGTTGAGCTGAGGCTTGAGTGATATCTTGTCCTTGAAACAGCTTATCATATACTTGAAGC
ACTTTCTCTTTAAGTGAAC

consensusID : consensus_8298#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 466
fasta sequence

                              [GTTAATACTACTACCATTATTATTATTGGTAGTACTAGTAGTAATAGCCGATACAGGGACAGCTTTACCGGGTGAAACTAAATTTGGATCCAGATAACCAACCATAGATTCAGTACTGATAGCTTTTAAAATTCTATAATCGGATATAGGATCTGGAACAATTATGCTTTCTAAATCTCTTGAATTATTTATATAATGACCATTAGAATAAGACAGAAGTATAGCGAAATGATGACTACTTCTAGCTAATTCATATAGACATAGCAAAAGTGAATCACATGGTCTTAAACTAATAATTGATGCAACATCACCGGAGACCAGAGTAGTGAAAAAAGATGAAAAAGAAGATAGAATACCACCAGAATTGTCACGTTGTTGTCCAAATTTTAAGTTAAATTCGGACAATGCGAGAGCGACAGTAGACAGTATACTATTTAACAACAGTTCATCTTCTGTCCCAGCCCCG]

[+] EMBL CD200566             [GTTAATACTACTACCATTATTATTATTGGTAGTACTAGTAGTAATAGCCGATACAGGGACAGCTTTACCGGGTGAAACTAAATTTGGATCCAGATAACCAACCATAGATTCAGTACTGATAGCTTTTAAAATTCTATAATCGGATATAGGATCTGGAACAATTATGCTTTCTAAATCTCTTGAATTATTTATATAATGACCATTAGAATAAGACAGAAGTATAGCGAAATGATGACTACTTCTAGCTAATTCATATAGACATAGCAAAAGTGAATCACATGGTCTTAAACTAATAATTGATGCAACATCACCGGAGACCAGAGTAGTGAAAAAAGATGAAAAAGAAGATAGAATACCACCAGAATTGTCACGTTGTTGTCCAAATTTTAAGTTAAATTCGGACAATGCGAGAGCGACAGTAGACAGTATACTATTTAACAACAGTTCATCTTCTGTCCCAGCCCCG]




>consensus_8298#1
GTTAATACTACTACCATTATTATTATTGGTAGTACTAGTAGTAATAGCCGATACAGGGAC
AGCTTTACCGGGTGAAACTAAATTTGGATCCAGATAACCAACCATAGATTCAGTACTGAT
AGCTTTTAAAATTCTATAATCGGATATAGGATCTGGAACAATTATGCTTTCTAAATCTCT
TGAATTATTTATATAATGACCATTAGAATAAGACAGAAGTATAGCGAAATGATGACTACT
TCTAGCTAATTCATATAGACATAGCAAAAGTGAATCACATGGTCTTAAACTAATAATTGA
TGCAACATCACCGGAGACCAGAGTAGTGAAAAAAGATGAAAAAGAAGATAGAATACCACC
AGAATTGTCACGTTGTTGTCCAAATTTTAAGTTAAATTCGGACAATGCGAGAGCGACAGT
AGACAGTATACTATTTAACAACAGTTCATCTTCTGTCCCAGCCCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8298#0      CTGTTAATACTACTACCATTATTATTATTGGTAGTACTAGTAGTAATAGCCGATACAGGG 60
consensus_8298#1      --GTTAATACTACTACCATTATTATTATTGGTAGTACTAGTAGTAATAGCCGATACAGGG 58
                        **********************************************************

consensus_8298#0      ACAGCTTTACCGGGTGAAACTAAATTTGGATCCAGATAACCAACCATAGATTCAGTACTG 120
consensus_8298#1      ACAGCTTTACCGGGTGAAACTAAATTTGGATCCAGATAACCAACCATAGATTCAGTACTG 118
                      ************************************************************

consensus_8298#0      ATAGCTTTTAAAATTCTATAATCGAATATAGGATCTGGAACAATTATGCTTTCTAAATCT 180
consensus_8298#1      ATAGCTTTTAAAATTCTATAATCGGATATAGGATCTGGAACAATTATGCTTTCTAAATCT 178
                      ************************ ***********************************

consensus_8298#0      CTTGAATTATCTGTATAATGACCATTAGAATAAGACAGAAGTATAGCGAAATGATGACTA 240
consensus_8298#1      CTTGAATTATTTATATAATGACCATTAGAATAAGACAGAAGTATAGCGAAATGATGACTA 238
                      ********** * ***********************************************

consensus_8298#0      CTTCTAGCTAATTCATATAGACATAGCAAAAGTGAATCACATGGTCTTAAACTAATAATT 300
consensus_8298#1      CTTCTAGCTAATTCATATAGACATAGCAAAAGTGAATCACATGGTCTTAAACTAATAATT 298
                      ************************************************************

consensus_8298#0      GATGCAACATCACCGGAGACCAGAGTAGTGAAAAAAGATGAAAAAGAAGATAGAATACCA 360
consensus_8298#1      GATGCAACATCACCGGAGACCAGAGTAGTGAAAAAAGATGAAAAAGAAGATAGAATACCA 358
                      ************************************************************

consensus_8298#0      CCAGAATTGTCACGTTGTTGTCCAAATTTTAAGTTAAATTCGGACAATGCGAGAGCGACA 420
consensus_8298#1      CCAGAATTGTCACGTTGTTGTCCAAATTTTAAGTTAAATTCGGACAATGCGAGAGCGACA 418
                      ************************************************************

consensus_8298#0      GTAGACAGTATACTCTGAAGGTAAGATAGTGAAGGAAATTTAATATTATTATCATGATTA 480
consensus_8298#1      GTAGACAGTATACTATTTA---ACAACAGTTCA-----TCTTCTGTCCCAGCCCCG---- 466
                      ************** *  *   *  * ***  *     * *  * *      *  *    

consensus_8298#0      GATCCTTGTTTTTGATGCGCTGGGTTGATCAGATGTAGGAAAAATGATAAGTGAGATACG 540
consensus_8298#1      ------------------------------------------------------------
                                                                                  

consensus_8298#0      AATGGTTGAATAAAATATTTCGCTTAACTTTCTAAGAAGACAAGAATACACTATTGGTTG 600
consensus_8298#1      ------------------------------------------------------------
                                                                                  

consensus_8298#0      AAAACGCGGCTTAATTATTCGAACGATATAGATATTTACGAATTGATCGTGCATGTATTT 660
consensus_8298#1      ------------------------------------------------------------
                                                                                  

consensus_8298#0      TCGACTCGGTTAGTCAATAATAAAGTTTCCTGCTCACTTTTAGTTTTCTCGTCCATGTGT 720
consensus_8298#1      ------------------------------------------------------------
                                                                                  

consensus_8298#0      CTAGTTGGACTTGGTTAGAGGAAGTTTGAATATCAGTAGCAGAATATGCATTTAACAACA 780
consensus_8298#1      ------------------------------------------------------------
                                                                                  

consensus_8298#0      GTTCATCTTCTGTCTGTTGAATTAATGTTTGAAATAAATTCAGTGAATCAGGTTCTGTAT 840
consensus_8298#1      ------------------------------------------------------------
                                                                                  

consensus_8298#0      ATTGTAATAGTAAACCAAGAAATCTGCATGCAGTGACACCATGATAATATCTTAATTGAG 900
consensus_8298#1      ------------------------------------------------------------
                                                                                  

consensus_8298#0      GATTGATCAATGTATTCATGATTAGGTCATAAATACGATCATCTAACAGAATAGGAATAA 960
consensus_8298#1      ------------------------------------------------------------
                                                                                  

consensus_8298#0      ATGGATTTTTGTTCAAAGATGAAGTAACCGAAGCAAATGTCATCATTGAATTGAACATAA 1020
consensus_8298#1      ------------------------------------------------------------
                                                                                  

consensus_8298#0      GACTACGAAGTAATTCTGGTTTATCTTCTCGGACTAGTTCAACGCATAGAGAAATGTAGT 1080
consensus_8298#1      ------------------------------------------------------------
                                                                                  

consensus_8298#0      TCTCCATAAAATCTTTAACATACTCCGGTCCTAAGAGTATCGCACTTAGTTCCTCATTTA 1140
consensus_8298#1      ------------------------------------------------------------
                                                                                  

consensus_8298#0      CATTTGATGATCTACACTTGTGAACGCCACTCAGTAAACAATCTAATGTTTGAATAGCGT 1200
consensus_8298#1      ------------------------------------------------------------
                                                                                  

consensus_8298#0      TGGCAACTCGGATGCGATGTCCATCATACTGAGCTGTTTGAAGGCATTGTATAAACAATC 1260
consensus_8298#1      ------------------------------------------------------------
                                                                                  

consensus_8298#0      TGTTGAGCTGAGGCTTGAGTGATATCTTGTCCTTGAAACAGCTTATCATATACTTGAAGC 1320
consensus_8298#1      ------------------------------------------------------------
                                                                                  

consensus_8298#0      ACTTTCTCTTTAAGTGAAC 1339
consensus_8298#1      -------------------