cluster # 8305

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Schistosoma mansoni
cluster # 8305 cluster # 8305 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8305#0 length = 800 sequences # 3

consensus_8305#1 length = 739 sequences # 3

consensusID : consensus_8305#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 800
fasta sequence

                              [TGCCATAGCCATAACTGATAATAAAAATAATATCATGCCAAAGTCGTCTGCTAAAAGTGACAATTCAAAAAGTGGTAAGACGAGTGGGAAAAATTCAACTAATTCTAATAATAAAACTGATAATTCCTCATCGACCGGCTCTGGTAAACAGTCCAAGTTGGCAAATGCAGTGAAGGTACGTCATATACTAT-GCGAAAAACAAAGTAAATGCTTAGAAGCTTTAGAACAACTTAAAAATGGTAAACGTTTTAATCAAGTAGCAGAAATATACAGTGAAGATAAAGCTCGTTCAGGGGGTGATCTAGGATGGATGTCCCGTGGATCAATGGTTGGTGCATTTCAAGATGCAGCATTTAACTTGCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGGATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATTTGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTACTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACATAATAAATGTCGTTGTACGTTCATTGATAGCAAGTACAATAATTTTTTGACAGCATATCTCTATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATCACACAGTATTTATCGGATTCACAATTCGAGATCATCGANCAGATCAAACTGAATCCGTCTAAATGCNAATGCAGACGTTN]

[-] EMBL CD140303             [TGCCATAGCCATAACTGATAATAAAAATAATATCATGCCAAAGTCGTCTGCTAAAAGTGACAATTCAAAAAGTGGTAAGACGAGTGGGAAAAATTCAACTAATTCTAATAATAAAACTGATAATTCCTCATCGACCGGCTCTGGTAAACAGTCCAAGTTGGCAAATGCAGTGAAGGTACGTCATATACTAT GCGAAAAACAAAGTAAATGCTTAGAAGCTTTAGAACAACTTAAAAATGGTAAACGTTTTAATCAAGTAGCAGAAATATACAGTGAAGATAAAGCTCGTTCAGGGGGTGATCTAGGATGGATGTCCCGTGGATCAATGGTTGGTGCATTTCAAGATGCAGCATTTAACTTGCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTC                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD082544             [                                                                                                                                                    ggccagAATTTGGCACGAG GGTGAAGGTACGTCATATACTATNGCGAAAAACAAAGTAAATGCTTANAAGCTTTAGAACAACTTAAAAATGGTAAACGTTTTAATCAAGTAGCAGAAATATACAGTGAAGATAAAGCTCGTTCAGGGGGTGATCTAGGATGGATGTCCCGTGGATCAATGGTTGGTGCATTTCAAGATGCAGCATTTAACTTGCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGGATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATTTGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTACTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACATAATAAATGTCGTTGTACGTTCATTGATAGCAAGTACAATAATTTTTTGACAGCATATCTCTATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATCACACAGTATTTATCGGATTCACAATTCGAGATCATCGANCAGATCAAACTGAATCCGTCTAAATGCNAATGCAGACGTTN]
[-] EMBL CD146391             [                                                                                                                                                                                                                                                                                                                                                  TTTCAAGATGCAGCATTTAACTTGCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGGATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTC                                                                                                                                                                                                                                                                                                                                   ]




>consensus_8305#0
TGCCATAGCCATAACTGATAATAAAAATAATATCATGCCAAAGTCGTCTGCTAAAAGTGA
CAATTCAAAAAGTGGTAAGACGAGTGGGAAAAATTCAACTAATTCTAATAATAAAACTGA
TAATTCCTCATCGACCGGCTCTGGTAAACAGTCCAAGTTGGCAAATGCAGTGAAGGTACG
TCATATACTATGCGAAAAACAAAGTAAATGCTTAGAAGCTTTAGAACAACTTAAAAATGG
TAAACGTTTTAATCAAGTAGCAGAAATATACAGTGAAGATAAAGCTCGTTCAGGGGGTGA
TCTAGGATGGATGTCCCGTGGATCAATGGTTGGTGCATTTCAAGATGCAGCATTTAACTT
GCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGG
ATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATT
TGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTA
CTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACAT
AATAAATGTCGTTGTACGTTCATTGATAGCAAGTACAATAATTTTTTGACAGCATATCTC
TATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATC
ACACAGTATTTATCGGATTCACAATTCGAGATCATCGANCAGATCAAACTGAATCCGTCT
AAATGCNAATGCAGACGTTN

consensusID : consensus_8305#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 739
fasta sequence

                              [GCCAGAATTTGGCACGAGGTCGTTAGGGGGTGATCTAGGATGGATGTCCCGTGGATCAATGGTTGGTGCATTTCAAGATGCAGCATTTAACTTGCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGGATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATTTGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTACTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACATAATAAATGTCGTTGTACGTTCATTGATAGCAAGTACAATAATTTTTTGACAGCATATCTCTATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATCACACAGTATTTATCGGATTCACAATTCGAGATCATCGACAAGATCAAACTGAATCCGTCTAAATGCAAATGCAGACGTTTTTACATTGTAGAAACCTTCCAAATTGCAATATAAAACTAGATTGATACTTATAAAAACGGTATGTAAAATCTCTGTGTTCAGGGTGGCCGTAGTTTCATTGTGTGTATTTGCGTAGTTTATTCGCTTTATATTGGCTTCTTTTATCTTTGCGTCAAATGTTATTTTATACCTAATTTGTTACATCCGAATATATTCCCCCAACAAT]

[+] EMBL CD081091             [GCCAGAATTTGGCACGAGGTCGTTAGGGGGTGATCTAGGATGGATGTCCCGTGGATCAATGGTTGGTGCATTTCAAGATGCAGCATTTAACTTGCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGGATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATTTGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTACTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACATAATAAATGTCGTTGTACGTTCATTGATAGCAAGTACAATAATTTTTTGACAGCATATCTCTATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATCACACAGTATTTATCGGATTCACAATTCGAGATCATCGACAAGATCAAACTGAATCCGTCTAAATGCAAATGCAGACGTTTTTACATTGTAGAAACCTTCCAAATTGCAATATAAAACTAGATTGATACTTATAAAAACGGTATGTAAAATCTCTGTGTTCAGGGTGGCCGTAGTTTCATTGTGTGTATTTGCGTAGTTTATTCGCTCTATATTGGCTTCTTTTATCTTTGCGTC AATGTTA TTTATACCTAA TTGTTACATCCG ATATATTCCCCCAc    ]
[-] EMBL CD074914             [                                                                                   CATTTAACTTGCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGGATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATTTGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTACTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACATAATAAATGTCGTTGTACGTTCATTGATAGCAAGTCCAATAATTTTTTGACAGCATATCTCTATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATCACACAGTATTTATCGGATTCACAATTCGAGATCATCGACAAGATCAAACTGAATCCGTTTAAATGCAAATGCAGACGTTTTTACATTGTAGAAACCTTCCAAATTGCAATATAAAACTAGATTGATACTTATAAAAACGGTATGTAAAATCTCTGTGTTCAGGGTGGCCGTAGTTTCATTGTGTGTATTTGCGTAGTTTATTCGCTTTATATTGGCTTCTTTTATCTTTGCGTCAAATGTTATTTTATACCTAATTTGTTACATCCGAATATATTCCCCCAACAAT]
[-] EMBL CD076142             [                                                                                                                                          TAAAACACAATATGGATATCATA TATCATGG TGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATTTGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTACTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACATAATAAATGTCGTTGTACGTTCATTGATAGCAAGTACAATAATTTTTTGACAGCATATCTCTATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATCACACAGTATTTATCGGATTCACAATTCGAGATCATCGACAAGATCAAACTGAATCCGTCTAAATGCAAATGCAGACGTTTTTACATTGTAGAAACCTTCCAAATTGCAATATAAAACTAGATTGATACTTATAAAAACGGTATGTAAAATCTCTGTGTTCAGGGTGGCCGTAGTTTCATTGTGTGTATTTGCGTAGTTTATTCGCTTTATATTGGCTTCTTTTATCTTTGCGTCAAATGTTATTTTATACCTAATTTGTTACATCCGAATATATTCCCCCAA    ]




>consensus_8305#1
GCCAGAATTTGGCACGAGGTCGTTAGGGGGTGATCTAGGATGGATGTCCCGTGGATCAAT
GGTTGGTGCATTTCAAGATGCAGCATTTAACTTGCCTATATCAACTTTAGAAAATCCCAA
GTATACTGATCCTCCAGTTAAAACACAATATGGATATCATATTATCATGGTTGAGGGAAG
ACGATAAAATATAAAACAAATAATCCCTTCATTTGTTTGATTGAGGTGTACTATTTTTAT
AATACACTTACATGTATTATAGTATACAGTGTACTTGTTAAATATTAAATGTGAATAACA
TCAGTTATTTATATTTCGCATGGCATAAAACATAATAAATGTCGTTGTACGTTCATTGAT
AGCAAGTACAATAATTTTTTGACAGCATATCTCTATAAAGGATAACCCAAACTTTTACGT
CATCTATCCTACAGTATGTAATTAACCATAATCACACAGTATTTATCGGATTCACAATTC
GAGATCATCGACAAGATCAAACTGAATCCGTCTAAATGCAAATGCAGACGTTTTTACATT
GTAGAAACCTTCCAAATTGCAATATAAAACTAGATTGATACTTATAAAAACGGTATGTAA
AATCTCTGTGTTCAGGGTGGCCGTAGTTTCATTGTGTGTATTTGCGTAGTTTATTCGCTT
TATATTGGCTTCTTTTATCTTTGCGTCAAATGTTATTTTATACCTAATTTGTTACATCCG
AATATATTCCCCCAACAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8305#0      TGCCATAGCCATAACTGATAATAAAAATAATATCATGCCAAAGTCGTCTGCTAAAAGTGA 60
consensus_8305#1      ------------------------------------------------------------
                                                                                  

consensus_8305#0      CAATTCAAAAAGTGGTAAGACGAGTGGGAAAAATTCAACTAATTCTAATAATAAAACTGA 120
consensus_8305#1      ------------------------------------------------------------
                                                                                  

consensus_8305#0      TAATTCCTCATCGACCGGCTCTGGTAAACAGTCCAAGTTGGCAAATGCAGTGAAGGTACG 180
consensus_8305#1      ------------------------------------------------------------
                                                                                  

consensus_8305#0      TCATATACTATGCGAAAAACAAAGTAAATGCTTAGAAGCTTTAGAACAACTTAAAAATGG 240
consensus_8305#1      ------------------------------------------------------------
                                                                                  

consensus_8305#0      TAAACGTTTTAATCAAGTAGCAGAAATATACAGTGAAGATAAAGCTCGTTCAGGGGGTGA 300
consensus_8305#1      --------------------------GCCAGAATTTGGCACGAGGTCGTT-AGGGGGTGA 33
                                                   * * *   *    ** ***** *********

consensus_8305#0      TCTAGGATGGATGTCCCGTGGATCAATGGTTGGTGCATTTCAAGATGCAGCATTTAACTT 360
consensus_8305#1      TCTAGGATGGATGTCCCGTGGATCAATGGTTGGTGCATTTCAAGATGCAGCATTTAACTT 93
                      ************************************************************

consensus_8305#0      GCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGG 420
consensus_8305#1      GCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGG 153
                      ************************************************************

consensus_8305#0      ATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATT 480
consensus_8305#1      ATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATT 213
                      ************************************************************

consensus_8305#0      TGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTA 540
consensus_8305#1      TGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTA 273
                      ************************************************************

consensus_8305#0      CTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACAT 600
consensus_8305#1      CTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACAT 333
                      ************************************************************

consensus_8305#0      AATAAATGTCGTTGTACGTTCATTGATAGCAAGTACAATAATTTTTTGACAGCATATCTC 660
consensus_8305#1      AATAAATGTCGTTGTACGTTCATTGATAGCAAGTACAATAATTTTTTGACAGCATATCTC 393
                      ************************************************************

consensus_8305#0      TATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATC 720
consensus_8305#1      TATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATC 453
                      ************************************************************

consensus_8305#0      ACACAGTATTTATCGGATTCACAATTCGAGATCATCGANCAGATCAAACTGAATCCGTCT 780
consensus_8305#1      ACACAGTATTTATCGGATTCACAATTCGAGATCATCGACAAGATCAAACTGAATCCGTCT 513
                      **************************************  ********************

consensus_8305#0      AAATGCNAATGCAGACGTTN---------------------------------------- 800
consensus_8305#1      AAATGCAAATGCAGACGTTTTTACATTGTAGAAACCTTCCAAATTGCAATATAAAACTAG 573
                      ****** ************                                         

consensus_8305#0      ------------------------------------------------------------
consensus_8305#1      ATTGATACTTATAAAAACGGTATGTAAAATCTCTGTGTTCAGGGTGGCCGTAGTTTCATT 633
                                                                                  

consensus_8305#0      ------------------------------------------------------------
consensus_8305#1      GTGTGTATTTGCGTAGTTTATTCGCTTTATATTGGCTTCTTTTATCTTTGCGTCAAATGT 693
                                                                                  

consensus_8305#0      ----------------------------------------------
consensus_8305#1      TATTTTATACCTAATTTGTTACATCCGAATATATTCCCCCAACAAT 739