These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8308#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence [GAGGAGCTTTCAAGCTTCATAAGCCTTCTCTCCTCGAGGTGTCATCTGCGATTGAAGGTCATTTAAAGAATTGTTTCAAAACTGTCAAGTGCTCGATTACTGATTGTCCTGATTTGACAAGTTCACCATATGGCCTTACCTTAAGAGGATTGAGTGGTGAAGGAGTAATTTGTGATGTTGGGAGCTTTGATTACCTTTTGCCTGTCCCAAAAAAGGATAAACATTATGACCTTTTAGATGTATTTCGAAGCGCTGGGGTAGCTGCTGGTGCTGTAATTGGGGCTGGTGCTGGACCATTCTTTCTCACTGGATCGAACTCTGAGATGGTCATAAATATTTCGTCTGAAAATGGTGTTGTAAAAAATGGTTCTTTATTTGGATCATACGATAAAGAAAATAATAAACCTTTACTAACAAAAGCTGATAATACCAAATTTGCTTTGTTAGGTCAAATGTTCATGTGTGAAGGTAAACCTGGACCGGTTATTGAATTGAATGTATCTGGGCGTATTCGTGATGGAAAATTCGATGCTATGATTCGTGAAGCATTACATGTAAAATATGGTCATTTAAATAATGCTGTTGGTTTGGGTGGTGTTATAGTTCAAGAACAAGGCANATCATTATATCATGTACTT] [+] EMBL CD082774 [GAGGAGCTTTCAAGCTTCATAAGCCTTCTCTCCTCGAGGTGTCATCTGCGATTGAAGGTCATTTAAAGAATTGTTTCAAAACTGTCAAGTGCTCGATTACTGATTGTCCTGATTTGACAAGTTCACCATATGGCCTTACCTTAAGAGGATTGAGTGGTGAAGGAGTAATTTGTGATGTTGGGAGCTTTGATTACCTTTTGCCTGTCCCAAAAAAGGATAAACATTATGACCTTTTAGATGTATTTCGAAGCGCTGGGGTAGCTGCTGGTGCTGTAATTGGGGCTGGTGCTGGACCATTCTTTCTCACTGGATCGAACTCTGAGATGGTCATAAATATTTCGTCTGAAAATGGTGTTGTAAAAAATGGTTCTTTATTTGGATCATACGATAAAGAAAATAATAAACCTTTACTAACAAAAGCTGATAATACCAAATTTGCTTTGTTAGGTCAAATGTTCATGTGTGAAGGTAAACCTGGACCGGTTATTGAATTGAATGTATCTGGGCGTATTCGTGATGGAAAATTCGATGCTATGATTCGTGAAGCATTACATGTAAAATATGGTCATTTAAATAATGCTGTTGGTTTGGGTGGTGTTATAGTTCAAGAACAAGGCANATCATTATATCATGTACTT] consensusID : consensus_8308#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 499 fasta sequence [GGTAGTATCTAAATATCTAAGGCTATGTTCCTCAGCGATTGAAGGTCATTTAAAGAATTGTTTCAAAACTGTCAAGTGCTCGATTACTGATTGTCCTGATTTGACAAGTTCACCATATGGCCTTACCTTAAGAGGTGTCTAAGTTTTCGAATTATTCCCATAATTCTGAAGGATTGAGTGGTGAAGGAGTAATTTGTGATGTTGGGAGCTTTGATTACCTTTTGCCTGTCCCAAAAAAGGATAAAATGTATTTCGAAGCGCTGGGGTAGCTGCTGGTGCTGTAATTGGGGCTGGTGCTGGACCATTCTTTCTCACTGGATCGAACTCTGAGATGGTCATAAATATTTCGTNTGAAAATGGTGTTGTAAAAAATGGTTCTTTATTTGGATCATACGATAAAGAAAATAATAAACCTTTACTAACAAAAGCTGATAATACCAAATTTGCTTTGTTAGGTCAAATGTTCATGTGTGAAGGTAAACCTGGACCCCTTATTGAA] [+] EMBL CD181044 [GGTAGTATCTAAATATCTAAGGCTATGTTCCTCAGCGATTGAAGGTCATTTAAAGAATTGTTTCAAAACTGTCAAGTGCTCGATTACTGATTGTCCTGATTTGACAAGTTCACCATATGGCCTTACCTTAAGAGGTGTCTAAGTTTTCGAATTATTCCCATAATTCTGAAGGATTGAGTGGTGAAGGAGTAATTTGTGATGTTGGGAGCTTTGATTACCTTTTGCCTGTCCCAAAAAAGGATAAAATGTATTTCGAAGCGCTGGGGTAGCTGCTGGTGCTGTAATTGGGGCTGGTGCTGGACCATTCTTTCTCACTGGATCGAACTCTGAGATGGTCATAAATATTTCGTNTGAAAATGGTGTTGTAAAAAATGGTTCTTTATTTGGATCATACGATAAAGAAAATAATAAACCTTTACTAACAAAAGCTGATAATACCAAATTTGCTTTGTTAGGTCAAATGTTCATGTGTGAAGGTAAACCTGGACCCCTTATTGAA] [+] EMBL CD181094 [GGTAGTATCTAAATATCTAAGGCTATGTTCCTCAGCGATTGAAGGTCATTTAAAGAATTGTTTCAAAACTGTCAAGTGCTCGATTACTGATTGTCCTGATTTGACAAGTTCACCATATGGCCTTACCTTAAGAGGTGTCTAAGTTTTCGAATTATTCCCATAATTCTGAAGGATTGAGTGGTGAAGGAGTAATTTGTGATGTTGGGAGCTTTGATTACCTTTTGCCTGTCCCAAAAAAGGATAAAATGTATTTCGAAGCGCTGGGGTAGCTGCTGGTGCTGTAATTGGGGCTGGTGCTGGACCATTCTTTCTCACTGGATCGAACTCTGAGATGGTCATAAATATTTCGTCTGAAAATGGTGTTGTAAAAAATGGTTCTTTATTTGGATCATACGATAAAGAAAATAATAAACCTTTACTAACAAAAGCTGATAATACCAAATTTGCTTTGTTAGGTCAAATGTTCATGTGTGAAGGTAAACCTGGACCGGTTATTGAA] consensusID : consensus_8308#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 279 fasta sequence [GGTAGTATCTAAATATCTAAGGCTATGTTCCTCAGCGATTGAAGGTCATTTAAAGAATTGTTTCAAAACTGTCAAGTGCTCGATTACTGATTGTCCTGATTTGACAAGTTCACCATATGGCCTTACCTTAAGAGGTGTCTAAGTTTTCGAATTATTCCCATAATTCTGAAGGATTGAGTGGTGAAGGAGTAATTTGTGATGTTGGGAGCTTTGATTACCTTTTGCCTGTCCCAAAAAAGGATAAACATTATGACCTTTTAGATGTATTTCGAAGCGCTG] [+] EMBL CD092852 [GGTAGTATCTAAATATCTAAGGCTATGTTCCTCAGCGATTGAAGGTCATTTAAAGAATTGTTTCAAAACTGTCAAGTGCTCGATTACTGATTGTCCTGATTTGACAAGTTCACCATATGGCCTTACCTTAAGAGGTGTCTAAGTTTTCGAATTATTCCCATAATTCTGAAGGATTGAGTGGTGAAGGAGTAATTTGTGATGTTGGGAGCTTTGATTACCTTTTGCCTGTCCCAAAAAAGGATAAACATTATGACCTTTTAGATGTATTTCGAAGCGCT ] [-] EMBL CD162701 [ CGATTGAAGGTCATTTAAAGAATTGTTTCAAAACTGTCAAGTGCTCGATTACTGATTGTCCTGATTTGACAAGTTCACCATATGGCCTTACCTTAAGAGGTGTCTAAGTTTTCGAATTATTCCCATAATTCTGAAGGATTGAGTGGTGAAGGAGTAATTTGTGATGTTGGGAGCTTTGATTACCTTTTGCCTGTCCCAAAAAAGGATAAACATTATGACCCTTTAGATGTATTTCGAAGCGCTG] [-] EMBL CD162702 [ CGATTGAAGGTCATTTAAAGAATTGTTTCAAAACTGTCAAGTGCTCGATTACTGATTGTCCTGATTTGACAAGTTCACCATATGGCCTTACCTTAAGAGGTGTCTAAGTTTTCGAATTATTCCCATAATTCTGAAGGATTGAGTGGTGAAGGAGTAATTTGTGATGTTGGGAGCTTTGATTACCTTTTGCCTGTCCCAAAAAAGGATAAACATTATGACCTTTTAGATGTATTTCGAAGCGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8308#1 -GGTAGTATCTAAATATC-TAAGGCTATGTTCCTCA-----------GCGATTGAAGGTC 47 consensus_8308#2 -GGTAGTATCTAAATATC-TAAGGCTATGTTCCTCA-----------GCGATTGAAGGTC 47 consensus_8308#0 GAGGAGCTTTCAAGCTTCATAAGCCTTCTCTCCTCGAGGTGTCATCTGCGATTGAAGGTC 60 * ** * ** ** **** ** ***** ************* consensus_8308#1 ATTTAAAGAATTGTTTCAAAACTGTCAAGTGCTCGATTACTGATTGTCCTGATTTGACAA 107 consensus_8308#2 ATTTAAAGAATTGTTTCAAAACTGTCAAGTGCTCGATTACTGATTGTCCTGATTTGACAA 107 consensus_8308#0 ATTTAAAGAATTGTTTCAAAACTGTCAAGTGCTCGATTACTGATTGTCCTGATTTGACAA 120 ************************************************************ consensus_8308#1 GTTCACCATATGGCCTTACCTTAAGAGGTGTCTAAGTTTTCGAATTATTCCCATAATTCT 167 consensus_8308#2 GTTCACCATATGGCCTTACCTTAAGAGGTGTCTAAGTTTTCGAATTATTCCCATAATTCT 167 consensus_8308#0 GTTCACCATATGGCCTTACCTTAAGAGG-------------------------------- 148 **************************** consensus_8308#1 GAAGGATTGAGTGGTGAAGGAGTAATTTGTGATGTTGGGAGCTTTGATTACCTTTTGCCT 227 consensus_8308#2 GAAGGATTGAGTGGTGAAGGAGTAATTTGTGATGTTGGGAGCTTTGATTACCTTTTGCCT 227 consensus_8308#0 -----ATTGAGTGGTGAAGGAGTAATTTGTGATGTTGGGAGCTTTGATTACCTTTTGCCT 203 ******************************************************* consensus_8308#1 GTCCCAAAAAAGGATAAAATGTATTTCGAAGCGCTGGG-GTAGCTGCTGGTGCTG----- 281 consensus_8308#2 GTCCCAAAAAAGGATAAA---CATTATGACCTTTTAGATGTATTTCGAAGCGCTG----- 279 consensus_8308#0 GTCCCAAAAAAGGATAAA---CATTATGACCTTTTAGATGTATTTCGAAGCGCTGGGGTA 260 ****************** *** ** * * *** * * **** consensus_8308#1 -------------TAATTGGGGCTGGTGCTGGACCATTCTTTCTCACTGGATCGAACTCT 328 consensus_8308#2 ------------------------------------------------------------ consensus_8308#0 GCTGCTGGTGCTGTAATTGGGGCTGGTGCTGGACCATTCTTTCTCACTGGATCGAACTCT 320 consensus_8308#1 GAGATGGTCATAAATATTTCGTNTGAAAATGGTGTTGTAAAAAATGGTTCTTTATTTGGA 388 consensus_8308#2 ------------------------------------------------------------ consensus_8308#0 GAGATGGTCATAAATATTTCGTCTGAAAATGGTGTTGTAAAAAATGGTTCTTTATTTGGA 380 consensus_8308#1 TCATACGATAAAGAAAATAATAAACCTTTACTAACAAAAGCTGATAATACCAAATTTGCT 448 consensus_8308#2 ------------------------------------------------------------ consensus_8308#0 TCATACGATAAAGAAAATAATAAACCTTTACTAACAAAAGCTGATAATACCAAATTTGCT 440 consensus_8308#1 TTGTTAGGTCAAATGTTCATGTGTGAAGGTAAACCTGGACCCCTTATTGAA--------- 499 consensus_8308#2 ------------------------------------------------------------ consensus_8308#0 TTGTTAGGTCAAATGTTCATGTGTGAAGGTAAACCTGGACCGGTTATTGAATTGAATGTA 500 consensus_8308#1 ------------------------------------------------------------ consensus_8308#2 ------------------------------------------------------------ consensus_8308#0 TCTGGGCGTATTCGTGATGGAAAATTCGATGCTATGATTCGTGAAGCATTACATGTAAAA 560 consensus_8308#1 ------------------------------------------------------------ consensus_8308#2 ------------------------------------------------------------ consensus_8308#0 TATGGTCATTTAAATAATGCTGTTGGTTTGGGTGGTGTTATAGTTCAAGAACAAGGCANA 620 consensus_8308#1 ------------------ consensus_8308#2 ------------------ consensus_8308#0 TCATTATATCATGTACTT 638 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||