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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8320#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 600 fasta sequence
[CANATCCTCCAACGTATTGTATTTTCGACTTTCAATTTTAGACGCGTCCGTCCTTCTTCATCTAAAATTTCATCTTCATCCAGTTCATCTTCGTAAAAGTTAGGGTCGAACGGACGAGTTTCAACCGACAAAAAAATTAGGCATTTTTACCAAATGTACCTCCCTGCCCAAATCTGCACGAATCAGTGGAAAATCAACAGATATTCTTGTTTCGTCCGGTTCATGCGCCGAATCATCCTCTACATCCTCAGCGTTACTTCTATGGCCTTCATTATCATTAGAATTGGCCATGTCATCTAATTGTGACCCATTATCTCCCGTTTCACTACCATCATCTTGCCGGGAACCATCATTATTAGGACTACTAGAAGAGGATCGGATACTCTGAAGCCTTTTTTTCAAAGAACTTTGGCTATGTGAGTTATCTGAATCGTTTTCTGTTTCCTGTTGCTCCAAAGCGTTGTCATTAAGTTGATTTTCGTGGTCTGATTCTTCGAAACTATCCTGTTCAAGCCTAGGCTGCCTATGTTTTGGTTGTGTTTCTTTATCACTATCAGTATCATCTCCGAAAACATTCCTTTGTGTTACACGACTTCGTTC]
[+] EMBL CD159954 [CANATCCTCCAACGTATTGTATTTTCGACTTTCAATTTTAGACGCGTCCGTCCTTCTTCATCTAAAATTTCATCTTCATCCAGTTCATCTTCGTAAAAGTTAGGGTCGAACGGACGAGTTTCAACCGACAAAAAAATTAGGCATTTTTACCAAATGTACCTCCCTGCCCAAATCTGCACGAATCAGTGGAAAATCAACAGATATTCTTGTTTCGTCCGGTTCATGCGCCGAATCATCCTCTACATCCTCAGCGTTACTTCTATGGCCTTCATTATCATTAGAATTGGCCATGTCATCTAATTGTGACCCATTATCTCCCGTTTCACTACCATCATCTTGCCGGGAACCATCATTATTAGGACTACTAGAAGAGG ]
[+] EMBL CD159961 [ caATCCTCCAACGTATTGTATTTTCGACTTTCAATTTTAGACGCGTCCGTCCTTCTTCATCTAAAATTTCATCTTCATCCAGTTCATCTTCGTAAAAGTTAGGGTCGAACGGACGAGTTTCAACCGAC AAAAAATTAGGCATTTTTACCAAATGTACCTCCCTGCCCAAATCTGCACGAATCAGTGGAAAATCAACAGATATTCTTGTTTCGTCCGGTTCATGCGCCGAATCATCCTCTACATCCTCAGCGTTACTTCTATGGCCTTCATTATCATTAGAATTGGCCATGTCATCTAATTGTGACCCATTATCTCCCGTTTCTCTACCATCATCTTGCCGGGAACCATCATTATTAGGACTACTAGAAGAGG ]
[-] EMBL CD188736 [ CACGAATCAGTGGAAAATCAACAGATATTCTTGTTTCGTCCGGTTCATGCGCCGAATCATCCTCTACATCCTCAGCGTTACTTCTATGGCCTTCATTATCATTAGAATTGGCCATGTCATCTAATTGTGACCCATTATCTCCCGTTTCACTACCATCATCTTGCCGGGAACCATCATTATTAGGACTACTAGAAGAGGATCGGATACTCTGAAGCCTTTTTTTCAAAGAACTTTGGCTATGTGAGTTATCTGAATCGTTTTCTGTTTCCTGTTGCTCCAA ]
[-] EMBL CD193543 [ ATCATCCTCTACATCCTCAGCGTTACTTCTATGGCCTTCATTATCATTAGAATTGGCCATGTCATCTAATTGTGACCCATTATCTCCCGTTTCACTACCATCATCTTGCCGGGAACCATCATTATTAGGACTACTAGAAGAGGATCGGATACTCTGAAGCCTTTTTTTCAAAGAACTTTGGCTATGTGAGTTATCTGAATCGTTTTCTGTTTCCTGTTGCTCCAAAGCGTTGTCATTAAGTTGATTTTCGTGGTCTGATTCTTCGAAACTATCCTGTTCAAGCCTAGGCTGCCTATGTTTTGGTTGTGTTTCTTTATCACTATCAGTATCATCTCCGAAAACATTCCTTTGTGTTACACGACTTCGTTC]
[-] EMBL CD132201 [ AGTTGATTTTCGTGGTCTGATTCTTCGAAACTATCCTGTTCAAGCCTAGGCTGCCTATGTTTTGGTTGTGTTTCTTTATCACTATCAGTATCATCTCCGAAAACATTCCTTTGTGTTACACGA ]
consensusID : consensus_8320#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence
[AACTGGATGAAAATGGAATTTTTTATGAAGAAAAACGGGCGCCTTTAAAATTGAAAGTCGAAAATACAATACGTTGGAGGATTGGTAAAACACCTGATGGTGAAATGATTCATGAGTCAAATGCTCGTATTGTTCGTTGGTCGGATGGTTCTCTGTCACTACATCTTGGGGACGAAATTTTCGACATACACAAAGTAGATATTCAGTCAGATTATAATTATCTCTTCATACGAGAAGGTAGTGGTTTACAAGGACAATCAAGTTTGAAAACT]
[+] EMBL CD135767 [AACTGGATGAAAATGGAATTTTTTATGAAGAAAAACGGGCGCCTTTAAAATTGAAAGTCGAAAATACAATACGTTGGAGGATTGGTAAAACACCTGATGGTGAAATGATTCATGAGTCAAATGCTCGTATTGTTCGTTGGTCGGATGGTTCTCTGTCACTACATCTTGGGGACGAAATTTTCGACATACACAAAGTAGATATTCAGTCAGATTATAATTATCTCTTCATACGAGAAGGTAGTGGTTTACAAGGACAATCAAGTTTGAAAACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8320#0 CANATCCTCCAACGTATTGTATTTTCGACTTTCAATTTTAGACGCGTCCGTCCTTCTTCA 60
consensus_8320#1 ------------------------------------------------------------
consensus_8320#0 TCTAAAATTTCATCTTCATCCAGTTCATCTTCGTAAAAGTTAGGGTCGAACGGACGAGTT 120
consensus_8320#1 -------------------------------------AACTGGATGAAAATGGA--ATTT 21
* * * ** *** * **
consensus_8320#0 TCAACCGACAAAAAAATTAGGCATTTTTACCAAATGTACCTCCCTGCCCAAATCTGCACG 180
consensus_8320#1 TTTATG---AAGAAAAACGGGCGCCTTTAA-AATTGAAAGTCGAAAATACAATACGT-TG 76
* * ** **** *** **** ** ** * ** *** * *
consensus_8320#0 AATCAGTGGAAAATCAACAGATATTCTTGTTTCGTCCGGTTCATGCGCCGAATCATCCTC 240
consensus_8320#1 GAGGATTGGTAAAACACCTGATGGTGAAAT-------GATTCATGAGTCAAATGCTCGTA 129
* * *** *** ** * *** * * * ****** * * *** ** *
consensus_8320#0 TACATCCTCAGC--GTTACTTCTATGGCCTTCATTATCATTAGAATTGGCCATGTCATCT 298
consensus_8320#1 TTGTTCGTTGGTCGGATGGTTCTCTG----TCACTACATCTTGGGGACGAAATTTTCGAC 185
* ** * * * * **** ** *** ** * * * ** *
consensus_8320#0 AATTGTGACCCATTATCTCCCGTTTCACTACCATCATCTTGCCGGGAACCATCATTATTA 358
consensus_8320#1 ATACACAAAGTAG-ATATTCAGTCAGATTATAATTATCTCTTCATACGAGAAGGTAGT-- 242
* * * ** * * ** * ** ** **** * * * *
consensus_8320#0 GGACTACTAGAAGAGGATCGGATACTCTGAAGCCTTTTTTTCAAAGAACTTTGGCTATGT 418
consensus_8320#1 GGTTTAC--AAGGACAATCAAGT---TTGAAAACT------------------------- 272
** *** * ** *** * **** **
consensus_8320#0 GAGTTATCTGAATCGTTTTCTGTTTCCTGTTGCTCCAAAGCGTTGTCATTAAGTTGATTT 478
consensus_8320#1 ------------------------------------------------------------
consensus_8320#0 TCGTGGTCTGATTCTTCGAAACTATCCTGTTCAAGCCTAGGCTGCCTATGTTTTGGTTGT 538
consensus_8320#1 ------------------------------------------------------------
consensus_8320#0 GTTTCTTTATCACTATCAGTATCATCTCCGAAAACATTCCTTTGTGTTACACGACTTCGT 598
consensus_8320#1 ------------------------------------------------------------
consensus_8320#0 TC 600
consensus_8320#1 --
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||