cluster # 8328

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Schistosoma mansoni
cluster # 8328 cluster # 8328 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8328#0 length = 389 sequences # 5

consensus_8328#1 length = 160 sequences # 1

consensusID : consensus_8328#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 389
fasta sequence

                              [CAATTCCCAAGGTCACGGTCTTGAAACACGTTTGAGTGTACATCATGACTCTAGGTGTAAACCCACGGGCTTACCCGCTGGCAGGTCCCGAATTAACAAATAAAATAATCGAACTTGTCAAACAAGCTAGTTCATACAAACAGCTTAAGAAGGGTGCAAACGAGGCGACCAAGGCTCTTAACAGAGGAAAAGCAGAGTTTATTGTAATGGCTGCAGACATAGATCCCCTTGAAATAGTTTTGCACTTGCCTCTTCTGTGTGAAGATAAGAATGTCCCTTACGTTTTCATCCCATCACAAATGGCTTTGGGTCGTGCCTGTGGTGTATCCAGATCGGTGGCAGCCGTCGCTGTTACAGATAGTGAGGGCTCACAACTCAAACCTCTCGTC]

[+] EMBL CD141425             [CAATTCCCAAGGTCACGGTCTTGAAACACGTTTGAGTGTACATCATGACTCTAGGTGTAAACCCACGGGCTTACCCGCTGGCAGGTCCCGAATTAACAAATAAAATAATCGAACTTGTCAAACAAGCTAGTTCATACAAACAGCTTAAGAAGGGTGCAAACGAGGCGACCAAGGCTCTTAACAGAGGAAAAGCAGAGTTTATTGTAATGGCTGCAGACATAGATCCCCTTGAAATAGTTTTGCACTTGCCTCTTCTGTGTGAAGATAAGAATGTCCCTTACGTTTTCATCCCATCACAAATGGCTTTGGGTCGTGCCTGTGGTGTATCCAGATCGGTGGCAGCCGTCGCTGTTACAGATAGTGAGGGCTC                   ]
[-] EMBL CD202488             [                                TGAGTGCACATCATGACTCTAGGTGTAAACCCACGGGCTTACCCGCTGGCAGGTCCCGAATTAACAAATAAAATAATCGAACTTGTCAAACAAGCTAGTTCATACAAACAGCTTAAGAAGGGTGCAAACGAGGCGACCAAGGCTCTTAACAGAGGAAAAGCAGAGTTTATTGTAATGGCTGCAGACATAGATCCCCTTGAAATAGTTTTGCACTTGCCTCTTCTGTGTGAAGATAAGAATGTCCCTTACGTTTTCATCCCATCACAAATGGCTTTGGGTCGTGCCTGTGGTGTATCCAGATCGGTGGCAGCCGTCGCTGTTACAGATAGTGAGGGCTCACAACTCAAACCTCTCGTC]
[-] EMBL CD135634             [                                                     GGTGTAAACCCACGGGCTTACCCGCTGGCAGGTCCCGAATTAACAAATAAAATAATCGAACTTGTCAAACAAGCTAGTTCATACAAACAGCTTAAGAAGGGTGCAAACGAGGCGACCAAGGCTCTTAACAGAGGAAAAGCAGAGTTTATTGCAATGGCTGCAGACATAGATCCCCTTGAAATAGTTTTGCACTTGCCTCTTCTGTGTG                                                                                                                                ]
[-] EMBL CD202619             [                                                             CCCACGGGCTTACCCGCTGGCAGGTCCCGAATTAACAAATAAAATAATCGAACTTGTCAAACAAGCTAGTTCATACAAACAGCTTAAGAAGGGTGCAAACGAGGCGACCAAGGCCCTTAACAGAGGAAAAGCAGAGTTTATTGTAATGGCTGCAGACATAGATCCCCTTGAAAT                                                                                                                                                          ]
[-] EMBL CD164217             [                                                                                                                                                                                           AAAAGCAGAGTTTATTGTAATGGCTGCAGACATAGATCCCCTTGAAATAGTTTTGCACTTGCCTCTTCTGTGTGAAGATAAGAATGTCCCTTACGTTTTCATCCCATCACAAATGGCTTTG                                                                                 ]




>consensus_8328#0
CAATTCCCAAGGTCACGGTCTTGAAACACGTTTGAGTGTACATCATGACTCTAGGTGTAA
ACCCACGGGCTTACCCGCTGGCAGGTCCCGAATTAACAAATAAAATAATCGAACTTGTCA
AACAAGCTAGTTCATACAAACAGCTTAAGAAGGGTGCAAACGAGGCGACCAAGGCTCTTA
ACAGAGGAAAAGCAGAGTTTATTGTAATGGCTGCAGACATAGATCCCCTTGAAATAGTTT
TGCACTTGCCTCTTCTGTGTGAAGATAAGAATGTCCCTTACGTTTTCATCCCATCACAAA
TGGCTTTGGGTCGTGCCTGTGGTGTATCCAGATCGGTGGCAGCCGTCGCTGTTACAGATA
GTGAGGGCTCACAACTCAAACCTCTCGTC

consensusID : consensus_8328#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 160
fasta sequence

                              [GGTATTGTGATGGACGGGGGGTCCCGAATTAACAAATAAAATAATCGAACTTGTCAAACAAGCTAGTTCATACAAACAGCTTAAGAAGGGTGCAAACGAGGCGACCAAGGCTCTTAACAGAGGAAAAGCAGAGTTTATTGTAATGGCTGCAGACATAGAG]

[-] EMBL BG930980             [GGTATTGTGATGGACGGGGGGTCCCGAATTAACAAATAAAATAATCGAACTTGTCAAACAAGCTAGTTCATACAAACAGCTTAAGAAGGGTGCAAACGAGGCGACCAAGGCTCTTAACAGAGGAAAAGCAGAGTTTATTGTAATGGCTGCAGACATAGAG]




>consensus_8328#1
GGTATTGTGATGGACGGGGGGTCCCGAATTAACAAATAAAATAATCGAACTTGTCAAACA
AGCTAGTTCATACAAACAGCTTAAGAAGGGTGCAAACGAGGCGACCAAGGCTCTTAACAG
AGGAAAAGCAGAGTTTATTGTAATGGCTGCAGACATAGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8328#0      CAATTCCCAAGGTCACGGTCTTGAAACACGTTTGAGTGTACATCATGACTCTAGGTGTAA 60
consensus_8328#1      ------------------------------------------------------------
                                                                                  

consensus_8328#0      ACCCACGGGCTTACCCGCTGGCAGGTCCCGAATTAACAAATAAAATAATCGAACTTGTCA 120
consensus_8328#1      ----GGTATTGTGATGGACGGGGGGTCCCGAATTAACAAATAAAATAATCGAACTTGTCA 56
                                 *    *  **  *************************************

consensus_8328#0      AACAAGCTAGTTCATACAAACAGCTTAAGAAGGGTGCAAACGAGGCGACCAAGGCTCTTA 180
consensus_8328#1      AACAAGCTAGTTCATACAAACAGCTTAAGAAGGGTGCAAACGAGGCGACCAAGGCTCTTA 116
                      ************************************************************

consensus_8328#0      ACAGAGGAAAAGCAGAGTTTATTGTAATGGCTGCAGACATAGATCCCCTTGAAATAGTTT 240
consensus_8328#1      ACAGAGGAAAAGCAGAGTTTATTGTAATGGCTGCAGACATAGAG---------------- 160
                      *******************************************                 

consensus_8328#0      TGCACTTGCCTCTTCTGTGTGAAGATAAGAATGTCCCTTACGTTTTCATCCCATCACAAA 300
consensus_8328#1      ------------------------------------------------------------
                                                                                  

consensus_8328#0      TGGCTTTGGGTCGTGCCTGTGGTGTATCCAGATCGGTGGCAGCCGTCGCTGTTACAGATA 360
consensus_8328#1      ------------------------------------------------------------
                                                                                  

consensus_8328#0      GTGAGGGCTCACAACTCAAACCTCTCGTC 389
consensus_8328#1      -----------------------------