|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8334#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 973 fasta sequence
[GCGAATGTGTATGAGTTACCATTGAACAAACAGTGCAATACAGACAGTTTATTAATGTGACTCAATTTGCATTTCATTAGAATCACATTGCTTATATTCCAAACAACAGGATATAGAAAACTTGAATCTCAATTCTGTTTTGTGGAGCCATCACTTTCTTAAATCCCATTCGAAATCATATTGTCGAAGATGATGAATTTGTCAATATCACAACAATTTTGGAATAAATTGTTCATTCTGTTGAACAGTTGTTTCGTTATATTTGGCATTGTTCTTCTTGCGTTAGGCATTAAAGCACTTGAAACAATAAACGTATTGGCCAAAATGTTTAGTGGGATAACACCAGTTATCATTCCAACTGCAATCTTCATAGGATGCCTCATTCTAGTTGGCACAATCATTGGATACATTGGATTTTGGAAACCGAAACAGTTCATTATCATACTGCACATTGCATGTTTATGTCTTGCAGTGATCATTGAGATTTCTATAGCCACAGTGACGGTTACGTCTGGAGAAAAATTTCAAACAGCCGCTAATCATTCAGTGGTAAACGCCGTGAAACAATTTTACACAAACCCTTATCTTCAAGTAGAAATGGATAATCTGCAAAAGAGTATGTTGTGGAGCTACTTCATATTTGGATTATCCAAAATCACATATAAACGTACCATTCTCCTGTTTTATTGGTACTTTAGTTTATGCACGAGGTTGTGTGGAAGCATTCAATGATTATCTACAACAATATATAATTGCATTGATTTCTTTATGCTTTGTGTTTGGAATTATTAAAAGCGTTTACTTGATTATCTCCATTTATTTATTTAAAAAGTCAGTTACCATGAAAAATTTATCAACATAGAATCAGTTGTTATAATCAAATGAAGATGATAAGTTACAATGCAATTAAACAATTATGTCATTCACATCACCAACCCCCAAATCGTGATTTCCACCAAGCCAGGGTACCGTT]
[+] EMBL CD084373 [GCGAATGTGTATGAGTTACCATTGAACAAACAGTGCAATACAGACAGTTTATTAATGTGACTCAATTTGCATTTCATTAGAATCACATTGCTTATATTCCAAACAACAGGATATAGAAAACTTGAATCTCAATTCTGTTTTGTGGAGCCATCACTTTCTTAAATCCCATTCGAAATCATATTGTCGAAGATTATGAATTTGTCAATATCACAACAATTTTGGAATAAATTGTTCATTCTGTTGAACAGTTGTTTCGTTATATTTGGCATTGTTCTTCTTGCGTTAGGCATTACAGCACTTGAAACAATAAACGAATTGGCCAAAATGTTTAGTGGGATAACACCAGTTATCATTCCAACTGCAATCTTCATAGGATGCCTCATTCTAGTTGGCACAATCATTGGATACATTGGATTTTGGAAACCGAAACAGTTCATTATCATAC ]
[+] EMBL CD129697 [ CGAGGATGATGAATTTGTCAATATCACAACAATTTTGGAATAAATTGTTCATTCTGTTGAACAGTTGTTTCGATATATTTGGCATTGTTCTTCTTGCGTTAGGCATTAAAGCACTTGAAACAATAAACGTATTGGCCAAAATGTTTAGTGCGATAACACCAGTTATCATTCCAACTGCAATCTTCATAGGATGCCTCAT ]
[+] EMBL CD129722 [ GAAGATGATGAATTTGTCAATATCACAACAATTTTGGAATAAATTGTTCATTCTGTTGAACAGTTGTTTCGTTATATTTGGCATTGTTCTTCTTGCGTTAGGCATTAAAGCACTTGAAACAATAAACGTATTGGCCAAAATGTTTAGTGGGATAACACCAGTTATCATTCCAACTGCAATCTTCATAGGATGCCTCATTCTAGTTGGCACAATCATTGGATACATTGGATTTTGGAAACCGAAACAGTTCATTATCATACTGCACATTGCATGTTT ]
[-] EMBL CD168248 [ ATCATTGGATACATTGGATTTTGGAAACCGAAACAGTTCATTATCATACTGCACATTGCATGTTTATGTCTTGCAGTGATCATTGAGATTTCTATAGCCACAGTGACGGTTACGTCTGGAGAAAAATTTCAAACAGCCGCTAATCATTCAGTGGTAAACGCCGTGAAACAATTTTACACAAACCCTTATCTTCAAGTAGAAATGGATAATCTGCAAAAGAGTATGTTGTGGAGCTACTTCATATTTGGATTATCCAAAATCACATATAAACGTACCATTCTCCTGTTTTATTGGTACTTTAGTTTATGCACGAGGTTGTGTGGAAGCATTCAATGATTATCTACAACAATATATAATTGCATTGATTTCTTTATGCTTTGTGTTTGGAATTATTAAAAGCGTTTACTTGATTATCTCCATTTATTTATTTAAAAAGTCAGTTACCATGAAAAATTTATCAACATAGAATCAGTTGTTATAATCAAATGAAGATGATAAGTTACAATGCAATTAAACAATTATGTCATTCACATCACCAACCCCCAAATCGTGATTTCCACCAAGCCAGGGTACCGTT]
consensusID : consensus_8334#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence
[TTATCCAAAATCACATATAAACGTACCATTCTCCTGTTATGTTGGTACTTTAGTTTATGCACGAGGTTGTGTGGAAGCATTCAATGATTATCTACAACAAAATATAGTTGTATTGATTTCCTTATTCTTTGTGTTTGGAATTATTAAAAGTGTTTACTTGATTATCTCCATTTATTTATTTAAAAAGTCAGTTACCATGAAAAATTTATCAACATAGAATCAGTTGTTATAATCAAATGAAGATGATAAGTTACAATGCAATTAAACAATTATGTCATTCACATCACCAACCCCCAAATCCTGGAACAATCTTCATTAACATAAATTTGGATCATAATTGATCAAAGTAATTTCATATGACATCTTACAATCTCTACATCACAAATACCATTAGTTGACATGTATTCTTCTCTCAACTTTCTACGACTATTATAATTTAACTGGTTGGGTGTTGATTATGCAATCATTATGTAATAGAACTAATGACAAAGAATAAAACAAAATGTTCTTTTTTAAAAAAAAAAAANNNAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGCAATTATCAAATACATTGACA]
[+] EMBL AW017279 [TTATCCAAAATCACATATAAACGTACCATTCTCCTGTTATGTTGGTACTTTAGTTTATGCACGAGGTTGTGTGGAAGCATTCAATGATTATCTACAACAAAATATAGTTGTATTGATTTCCTTATTCTTTGTGTTTGGAATTATTAAAAGTGTTTACTTGATTATCTCCATTTATTTATTTAAAAAGTCAGTTACCATGAAAAATTTATCAACATAGAATCAGTTGTTATAATCAAATGAAGATGATAAGTTACAATGCAATTAAACAATTATGTCATTCACATCACCAACCCCCAAATCCTGGAACAATCTTCATTAACATAAATTTGGATCATAATTGATCAAAGTAATTTCATATGACATCTTACAATCTCTACATCACAAATACCATTAGTTGACATGTATTCTTCTCTCAACTTTCTACGACTATTATAATTTAACTGGTTGGGTGTTGATTATGCAATCATTATGTAATAGAACTAATGACAAAGAATAAAACAAAATGTTCTTTTTTAAAAAAAAAAAANNNAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGCAATTATCAAATACATTGACA]
consensusID : consensus_8334#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 176 fasta sequence
[CCAGGAATTCGGCACGAGGGATACATTGGATTTTGGAAACCGAAACAGTTCATTATCATACTGGTAACTATTAAATCATTTGTGTTTTCTATCAACCAACATGATCTTGTTTTGTTCTCGTTACTTGTGTATAGCACATTGCATGTTTATGTCTTGCAGTGATCATTGAGATTTCT]
[+] EMBL CD077883 [CCAGGAATTCGGCACGAGGGATACATTGGATTTTGGAAACCGAAACAGTTCATTATCATACTGGTAACTATTAAATCATTTGTGTTTTCTATCAACCAACATGATCTTGTTTTGTTCTCGTTACTTGTGTATAGCACATTGCATGTTTATGTCTTGCAGTGATCATTGAGATTTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8334#0 GCGAATGTGTATGAGTTACCATTGAACAAACAGTGCAATACAGACAGTTTATTAATGTGA 60
consensus_8334#1 ------------------------------------------------------------
consensus_8334#2 ------------------------------------------------------------
consensus_8334#0 CTCAATTTGCATTTCATTAGAATCACATTGCTTATATTCCAAACAACAGGATATAGAAAA 120
consensus_8334#1 ------------------------------------------------------------
consensus_8334#2 ------------------------------------------------------------
consensus_8334#0 CTTGAATCTCAATTCTGTTTTGTGGAGCCATCACTTTCTTAAATCCCATTCGAAATCATA 180
consensus_8334#1 ------------------------------------------------------------
consensus_8334#2 ------------------------------------------------------------
consensus_8334#0 TTGTCGAAGATGATGAATTTGTCAATATCACAACAATTTTGGAATAAATTGTTCATTCTG 240
consensus_8334#1 ------------------------------------------------------------
consensus_8334#2 ------------------------------------------------------------
consensus_8334#0 TTGAACAGTTGTTTCGTTATATTTGGCATTGTTCTTCTTGCGTTAGGCATTAAAGCACTT 300
consensus_8334#1 ------------------------------------------------------------
consensus_8334#2 ------------------------------------------------------------
consensus_8334#0 GAAACAATAAACGTATTGGCCAAAATGTTTAGTGGGATAACACCAGTTATCATTCCAACT 360
consensus_8334#1 ------------------------------------------------------------
consensus_8334#2 ------------------------------------------------------------
consensus_8334#0 GCAATCTTCATAGGATGCCTCATTCTAGTTGGCACAATCATTGGATACATTGGATTTTGG 420
consensus_8334#1 ------------------------------------------------------------
consensus_8334#2 ------------------------------------------------------------
consensus_8334#0 AAACCGAAACAGTTCATTATCATACTGCACATTGCATGTTTATGTCTTGCAGTGATCATT 480
consensus_8334#1 ------------------------------------------------------------
consensus_8334#2 ------------------------------------------------------------
consensus_8334#0 GAGATTTCTATAGCCACAGTGACGGTTACGTCTGGAGAAAAATTTCAAACAGCCGCTAAT 540
consensus_8334#1 ------------------------------------------------------------
consensus_8334#2 ------------------------------------------------------------
consensus_8334#0 CATTCAGTGGTAAACGCCGTGAAACAATTTTACACAAACCCTTATCTTCAAGTAGAAATG 600
consensus_8334#1 ------------------------------------------------------------
consensus_8334#2 ------------------------------------------------------------
consensus_8334#0 GATAATCTGCAAAAGAGTATGTTGTGGAGCTACTTCATATTTGGATTATCCAAAATCACA 660
consensus_8334#1 ---------------------------------------------TTATCCAAAATCACA 15
consensus_8334#2 ------------------------------------------------CCAGGAATTCGG 12
* ***
consensus_8334#0 TATAAACGTACCATTCTCCTGTT-TTATTGGTACTTTAGTTTAT-GCACGAGGTTGTGTG 718
consensus_8334#1 TATAAACGTACCATTCTCCTGTT-ATGTTGGTACTTTAGTTTAT-GCACGAGGTTGTGTG 73
consensus_8334#2 CACGAGGGATACATTGGATTTTGGAAACCGAAACAGTTCATTATCATACTGGTAACTATT 72
* * * **** * * * ** * **** ** * * *
consensus_8334#0 GAAGCATTCAATGATTATCTACAACAATATATAATTGCATTGATTTCTTTATGCTTTGTG 778
consensus_8334#1 GAAGCATTCAATGATTATCTACAACAAAATATAGTTGTATTGATTTCCTTATTCTTTGTG 133
consensus_8334#2 AAATCATTTGTGTTTTCTATCAACCAACATGATCTTGTTTTGTTCTCGTTAC---TTGTG 129
** **** ** * * * *** ** *** *** * ** *** *****
consensus_8334#0 TTTGGAATTATTAAAAGCGTTTACTTGATTATCTCCATTTATTTATTTAAAAAGTCAGTT 838
consensus_8334#1 TTTGGAATTATTAAAAGTGTTTACTTGATTATCTCCATTTATTTATTTAAAAAGTCAGTT 193
consensus_8334#2 TATAGCAC-ATTGCATGTTTATGTCTTGCAGTGATCATTGAGATTTCT------------ 176
* * * * *** * * * * * * **** * * * *
consensus_8334#0 ACCATGAAAAATTTATCAACATAGAATCAGTTGTTATAATCAAATGAAGATGATAAGTTA 898
consensus_8334#1 ACCATGAAAAATTTATCAACATAGAATCAGTTGTTATAATCAAATGAAGATGATAAGTTA 253
consensus_8334#2 ------------------------------------------------------------
consensus_8334#0 CAATGCAATTAAACAATTATGTCATTCACATCACCAACCCCCAAATCGTG-----ATTTC 953
consensus_8334#1 CAATGCAATTAAACAATTATGTCATTCACATCACCAACCCCCAAATCCTGGAACAATCTT 313
consensus_8334#2 ------------------------------------------------------------
consensus_8334#0 CACCAAGCCAGGGTACCGTT---------------------------------------- 973
consensus_8334#1 CATTAACATAAATTTGGATCATAATTGATCAAAGTAATTTCATATGACATCTTACAATCT 373
consensus_8334#2 ------------------------------------------------------------
consensus_8334#0 ------------------------------------------------------------
consensus_8334#1 CTACATCACAAATACCATTAGTTGACATGTATTCTTCTCTCAACTTTCTACGACTATTAT 433
consensus_8334#2 ------------------------------------------------------------
consensus_8334#0 ------------------------------------------------------------
consensus_8334#1 AATTTAACTGGTTGGGTGTTGATTATGCAATCATTATGTAATAGAACTAATGACAAAGAA 493
consensus_8334#2 ------------------------------------------------------------
consensus_8334#0 ------------------------------------------------------------
consensus_8334#1 TAAAACAAAATGTTCTTTTTTAAAAAAAAAAAANNNAAAAAAAAAAAAAAACATGCCATG 553
consensus_8334#2 ------------------------------------------------------------
consensus_8334#0 -----------------------------------
consensus_8334#1 CAGCTGCATTACCGCAATTATCAAATACATTGACA 588
consensus_8334#2 -----------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||