cluster # 8335

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Schistosoma mansoni
cluster # 8335 cluster # 8335 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8335#0 length = 756 sequences # 2

consensus_8335#1 length = 645 sequences # 3
consensus_8335#2 length = 185 sequences # 1

consensusID : consensus_8335#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 756
fasta sequence

                              [CGTTTATCGACGCGCCATATCAACTGCGAAAAAT-GGCTA-GGTC-AGTTTCTCCTAAAGTTAGGGCTCTTGTGGATCGTATTATTAGAGTCGATCATGCAGGAGAGTTAGGTGCCAATAGAATTTACCAAGGACAGCTTATAGTACTTGGGAAATCGAGTATAGGCCCGAAAATAAAGAAAATGCATGATCAAGAAGAGGAACATTTGAAAAAGTTCCAGGAACTTATTCCTATTCATAGAGTCAGGCCAACATTACTTTTACCTTTGTGGAGCATTGCTGGGTTTGCACTAGGTGTGGGCTATGGCTTGCACCGTTGCTGTCGAGTCAGTGATATCTGAGCACTACAACAATCAAATTCGTGAGCTTGTCGAGAGTGACCCTGAAACCTATCAAGAGTTGCTGCAGACATTAACCAAGTTTCGGGATGAAGAAATGGAGCATCATGATNNNNNNNNNNNNNNNNNGCTGAACAGGCTCCTTTCTACGATATCATGTCTCAAATAATAAAAGCGGGTTGTCGAGCAAGTATTTTTTTGGCTGAACGTATATGATGAAAAATTAGCTTCAATAATAGTTACTTTGTACATTTATTAATGATTACTCTCTAAATTACGTGTTCTCACTTTAATTACTTTGGTTTATTTAGATCATTGTGAATGTTTCCATCATGAATTATGNACGTTGGTTCATTAAGACCTCATAATATTACTTTATGTACGTAATTATGTTATCAATCAAATTCTGAGNTAATATCAG]

[+] EMBL CD189498             [CGTTTATCGACGCGCCATATCAACTGCGAAAAAT GGCTA GGTC AGTTTCTCCTAAAGTTAGGGCTCTTGTGGATCGTATTATTAGAGTCGATCATGCAGGAGAGTTAGGTGCCAATAGAATTTACCAAGGACAGCTTATAGTACTTGGGAAATCGAGTATAGGCCCGAAAATAAAGAAAATGCATGATCAAGAAGAGGAACATTTGAAAAAGTTCCAGGAACTTATTCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD080889             [           GCGCCATATCAACTGCGAAAAATGGGCTAGGGTCAAGTTTCTCCTAAAGTTAGGGCTCTTGTGGATCGTATTATTAGAGTCGATCATGCAGGAGAGTTAGGTGCCAATAGAATTTACCAAGGACAGCTTATAGTACTTGGGAAATCGAGTATAGGCCCGAAAATAAAGAAAATGCATGATCAAGAAGAGGAACATTTGAAAAATTTCCAGGAACTTATTCCTATTCATAGAGTCAGGCCAACATTACTTTTACCTTTGTGGAGCATTGCTGGGTTTGCACTAGGTGTGGGCTATGGCTTGCACCGTTGCTGTCGAGTCAGTGATATCTGAGCACTACAACAATCAAATTCGTGAGCTTGTCGAGAGTGACCCTGAAACCTATCAAGAGTTGCTGCAGACATTAACCAAGTTTCGGGATGAAGAAATGGAGCATCATGATNNNNNNNNNNNNNNNNNGCTGAACAGGCTCCTTTCTACGATATCATGTCTCAAATAATAAAAGCGGGTTGTCGAGCAAGTATTTTTTTGGCTGAACGTATATGATGAAAAATTAGCTTCAATAATAGTTACTTTGTACATTTATTAATGATTACTCTCTAAATTACGTGTTCTCACTTTAATTACTTTGGTTTATTTAGATCATTGTGAATGTTTCCATCATGAATTATGNACGTTGGTTCATTAAGACCTCATAATATTACTTTATGTACGTAATTATGTTATCAATCAAATTCTGAGNTAATATCAG]




>consensus_8335#0
CGTTTATCGACGCGCCATATCAACTGCGAAAAATGGCTAGGTCAGTTTCTCCTAAAGTTA
GGGCTCTTGTGGATCGTATTATTAGAGTCGATCATGCAGGAGAGTTAGGTGCCAATAGAA
TTTACCAAGGACAGCTTATAGTACTTGGGAAATCGAGTATAGGCCCGAAAATAAAGAAAA
TGCATGATCAAGAAGAGGAACATTTGAAAAAGTTCCAGGAACTTATTCCTATTCATAGAG
TCAGGCCAACATTACTTTTACCTTTGTGGAGCATTGCTGGGTTTGCACTAGGTGTGGGCT
ATGGCTTGCACCGTTGCTGTCGAGTCAGTGATATCTGAGCACTACAACAATCAAATTCGT
GAGCTTGTCGAGAGTGACCCTGAAACCTATCAAGAGTTGCTGCAGACATTAACCAAGTTT
CGGGATGAAGAAATGGAGCATCATGATNNNNNNNNNNNNNNNNNGCTGAACAGGCTCCTT
TCTACGATATCATGTCTCAAATAATAAAAGCGGGTTGTCGAGCAAGTATTTTTTTGGCTG
AACGTATATGATGAAAAATTAGCTTCAATAATAGTTACTTTGTACATTTATTAATGATTA
CTCTCTAAATTACGTGTTCTCACTTTAATTACTTTGGTTTATTTAGATCATTGTGAATGT
TTCCATCATGAATTATGNACGTTGGTTCATTAAGACCTCATAATATTACTTTATGTACGT
AATTATGTTATCAATCAAATTCTGAGNTAATATCAG

consensusID : consensus_8335#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 645
fasta sequence

                              [GGAACTTATTCCTATTCATAGAGTCAGGCCAACATTACTTTTACCTTTGTGGAGCATTGCTGGGTTTGCACTAGGTGTGGGAAGTGCGCTTTTGGGTTCTAAATCTGCTATGGCTTGCACCGTTGCTGTCGAGTCAGTGATATCTGAGCACTACAACAATCAAATTCGTGAGCTTGTCGAGAGTGACCCTGAAACCTATCAAGAGTTGCTGCAGACATTAACCAAGTTTCGGGATGAAGAAATGGAGCATCATGATACAGGCCTTGAACATGATGCTGAACAGGCTCCTTTCTACGATATCATGTCTCAAATAATAAAAGCGGGTTGTCGAGCAAGTATTTTTTTGGCTGAACGTATATGATGAAAAATTAGCTTCAATAATAGTTACTTTGTACATTTATTAATGATTACTCTCTAAATTACGTGTTCTCACTTTATCACACGTAGTGTAAATTTCCTACAGATTTTAATTCTTATTACTTTGGTTTATTTAGATACATTGTGAATGTTTTCCATCATGAATTATTGTACGTTGGTTCATTAAAGACCTCATAAATAATTCACTTTTATGTCACGTAAATTATGTTAATCAAATCAAATTTCTGAAGTAAATAATTCAGCTGTAAAAACAGAATGATAATAATA]

[-] EMBL CD074721             [GGAACTTATTCCTATTCATAGAGTCAGGCCAACATTACTTTTACCTTTGTGGAGCATTGCTGGGTTTGCACTAGGTGTGGGAAGTGCGCTTTTGGGTTCTAAATCTGCTATGGCTTGCACCGTTGCTGTCGAGTCAGTGATATCTGAGCACTACAACAATCAAATTCGTGAGCTTGTCGAGAGTGACCCTGAAACCTATCAAGAGTTGCTGCAGACATTAACCAAGTTTCGGGATGAAGAAATGGAGCATCATGATACAGGCCTTGAACATGATGCTGAACAGGCTCCTTTCTACGATATCATGTCTCAAATAATAAAAGCGGGTTGTCGAGCAAGTATTTTTTTGGCTGAACGTATATGATGAAAAATTAGCTTCAATAATAGTTACTTTGTACATTTATTAATGATTACTCTCTAAATTACGTGTTCTCACTTTATCACACGTAGTGTAAATTTCCTACAGATTTTAATTCTTATTACTTTGGTTTATTTAGATACATTGTGAATGTTTTCCATCATGAATTATTGTACGTTGGTTCATTAAAGACCTCATAAATAATTCACTTTTATGTCACGTAAATTATGTTAATCAAATCAAATTTCTGAAGTAAATAATTCA                          ]
[+] EMBL CD061041             [                                         TACCTTTGTGGAGCATTGCTGGGTTTGCACTAGGTGTGGGAAGTGCGCTTTTGGGTTCTAAATCTGCTATGGCTTGCACCGTCGCTGTCGAGTCAGTGATATCTGAGCACTACAACAATCAAATTCGTGAGCTTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL AI395359             [                                                                                                                                                                                                                                                                                        cggttcCCCTTATACGATATCATGTCTCAAATAATAAAAGCGGGTTGTCGAGCAAGTATTTTTTTGGCTGAACGTATATGATGAAAAATTAGCTTCAATAATAGTTACTTTGTACATTTATTAATGATTACTCTCTAAATTACGTGTTCTCACTTTATCACACGTAGTGTAAATTTCCTACAGATTTTAATTCTTATTACTTTGGTTTATTTAGATACATTGTGAATGTTTTCCATCATGAATTATTGTACGTTGGTTCATTAAAGACCTCATAAATAATTCACTTTTATGTCACGTAAATTATGTTAATCAAATCAAATTTCTGAAGTAAATAATCCAGCTGTAAAAACAGAATGATAATAATA]




>consensus_8335#1
GGAACTTATTCCTATTCATAGAGTCAGGCCAACATTACTTTTACCTTTGTGGAGCATTGC
TGGGTTTGCACTAGGTGTGGGAAGTGCGCTTTTGGGTTCTAAATCTGCTATGGCTTGCAC
CGTTGCTGTCGAGTCAGTGATATCTGAGCACTACAACAATCAAATTCGTGAGCTTGTCGA
GAGTGACCCTGAAACCTATCAAGAGTTGCTGCAGACATTAACCAAGTTTCGGGATGAAGA
AATGGAGCATCATGATACAGGCCTTGAACATGATGCTGAACAGGCTCCTTTCTACGATAT
CATGTCTCAAATAATAAAAGCGGGTTGTCGAGCAAGTATTTTTTTGGCTGAACGTATATG
ATGAAAAATTAGCTTCAATAATAGTTACTTTGTACATTTATTAATGATTACTCTCTAAAT
TACGTGTTCTCACTTTATCACACGTAGTGTAAATTTCCTACAGATTTTAATTCTTATTAC
TTTGGTTTATTTAGATACATTGTGAATGTTTTCCATCATGAATTATTGTACGTTGGTTCA
TTAAAGACCTCATAAATAATTCACTTTTATGTCACGTAAATTATGTTAATCAAATCAAAT
TTCTGAAGTAAATAATTCAGCTGTAAAAACAGAATGATAATAATA

consensusID : consensus_8335#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 185
fasta sequence

                              [AGGTTCGCAGGCATCACTTTTACCTTTGTGGAGCATTGCTGGGTTTGCACTATGTGTGGGAAGTGCGCTTTTGGGTTCTAGAGCTGCTATGGCTTGCACCGTCGCTGTCGAGTCAGTGATATCTGAGCACTACAACAATCAAATTCGTGAGCTTGTCGAGAGTGACCCTGCGAACCTATGAGGGT]

[+] EMBL CD060809             [AGGTTCGCAGGCATCACTTTTACCTTTGTGGAGCATTGCTGGGTTTGCACTATGTGTGGGAAGTGCGCTTTTGGGTTCTAGAGCTGCTATGGCTTGCACCGTCGCTGTCGAGTCAGTGATATCTGAGCACTACAACAATCAAATTCGTGAGCTTGTCGAGAGTGACCCTGCGAACCTATGAGGGT]




>consensus_8335#2
AGGTTCGCAGGCATCACTTTTACCTTTGTGGAGCATTGCTGGGTTTGCACTATGTGTGGG
AAGTGCGCTTTTGGGTTCTAGAGCTGCTATGGCTTGCACCGTCGCTGTCGAGTCAGTGAT
ATCTGAGCACTACAACAATCAAATTCGTGAGCTTGTCGAGAGTGACCCTGCGAACCTATG
AGGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8335#1      ------------------------------------------------------------
consensus_8335#2      ------------------------------------------------------------
consensus_8335#0      CGTTTATCGACGCGCCATATCAACTGCGAAAAATGGCTAGGTCAGTTTCTCCTAAAGTTA 60
                                                                                  

consensus_8335#1      ------------------------------------------------------------
consensus_8335#2      ------------------------------------------------------------
consensus_8335#0      GGGCTCTTGTGGATCGTATTATTAGAGTCGATCATGCAGGAGAGTTAGGTGCCAATAGAA 120
                                                                                  

consensus_8335#1      ------------------------------------------------------------
consensus_8335#2      ------------------------------------------------------------
consensus_8335#0      TTTACCAAGGACAGCTTATAGTACTTGGGAAATCGAGTATAGGCCCGAAAATAAAGAAAA 180
                                                                                  

consensus_8335#1      -------------------------------------GGAACTTATTCCTATTCATAGAG 23
consensus_8335#2      ----------------------------------------------------------AG 2
consensus_8335#0      TGCATGATCAAGAAGAGGAACATTTGAAAAAGTTCCAGGAACTTATTCCTATTCATAGAG 240
                                                                                **

consensus_8335#1      TCAGGCCAACATTACTTTTACCTTTGTGGAGCATTGCTGGGTTTGCACTAGGTGTGGGAA 83
consensus_8335#2      GTTCGCAGGCATCACTTTTACCTTTGTGGAGCATTGCTGGGTTTGCACTATGTGTGGGAA 62
consensus_8335#0      TCAGGCCAACATTACTTTTACCTTTGTGGAGCATTGCTGGGTTTGCACTAGGTGTGGG-- 298
                          **   *** ************************************* *******  

consensus_8335#1      GTGCGCTTTTGGGTTCTAAATCTGCTATGGCTTGCACCGTTGCTGTCGAGTCAGTGATAT 143
consensus_8335#2      GTGCGCTTTTGGGTTCTAGAGCTGCTATGGCTTGCACCGTCGCTGTCGAGTCAGTGATAT 122
consensus_8335#0      ------------------------CTATGGCTTGCACCGTTGCTGTCGAGTCAGTGATAT 334
                                              **************** *******************

consensus_8335#1      CTGAGCACTACAACAATCAAATTCGTGAGCTTGTCGAGAGTGACCCTG-AAACCTATCAA 202
consensus_8335#2      CTGAGCACTACAACAATCAAATTCGTGAGCTTGTCGAGAGTGACCCTGCGAACCTAT-GA 181
consensus_8335#0      CTGAGCACTACAACAATCAAATTCGTGAGCTTGTCGAGAGTGACCCTG-AAACCTATCAA 393
                      ************************************************  *******  *

consensus_8335#1      GAGTTGCTGCAGACATTAACCAAGTTTCGGGATGAAGAAATGGAGCATCATGATACAGGC 262
consensus_8335#2      GGGT-------------------------------------------------------- 185
consensus_8335#0      GAGTTGCTGCAGACATTAACCAAGTTTCGGGATGAAGAAATGGAGCATCATGATNNNNNN 453
                      * **                                                        

consensus_8335#1      CTTGAACATGATGCTGAACAGGCTCCTTTCTACGATATCATGTCTCAAATAATAAAAGCG 322
consensus_8335#2      ------------------------------------------------------------
consensus_8335#0      NNNNNNNNNNN-GCTGAACAGGCTCCTTTCTACGATATCATGTCTCAAATAATAAAAGCG 512
                                                                                  

consensus_8335#1      GGTTGTCGAGCAAGTATTTTTTTGGCTGAACGTATATGATGAAAAATTAGCTTCAATAAT 382
consensus_8335#2      ------------------------------------------------------------
consensus_8335#0      GGTTGTCGAGCAAGTATTTTTTTGGCTGAACGTATATGATGAAAAATTAGCTTCAATAAT 572
                                                                                  

consensus_8335#1      AGTTACTTTGTACATTTATTAATGATTACTCTCTAAATTACGTGTTCTCACTTTATCACA 442
consensus_8335#2      ------------------------------------------------------------
consensus_8335#0      AGTTACTTTGTACATTTATTAATGATTACTCTCTAAATTACGTGTTCTCACTTTAATTAC 632
                                                                                  

consensus_8335#1      CGTAGTGTAAATTTCCTACAGATTTTAATTCTTATTACTTTGGTTTATTTAGATACATTG 502
consensus_8335#2      ------------------------------------------------------------
consensus_8335#0      TTTGGTTTA---TTTAGATCATTGTGAATGTTTCCATCATGAATTATGNACGTTGGTTCA 689
                                                                                  

consensus_8335#1      TGAATGTTTTCCATCATGAATTATTGTACGTTGGTTCATTAAAGACCTCATAAATAATTC 562
consensus_8335#2      ------------------------------------------------------------
consensus_8335#0      TTAAGACCTCATAATATTACTTTATGTACGTAATTATGTTATCAATCAAATTCTGAGNTA 749
                                                                                  

consensus_8335#1      ACTTTTATGTCACGTAAATTATGTTAATCAAATCAAATTTCTGAAGTAAATAATTCAGCT 622
consensus_8335#2      ------------------------------------------------------------
consensus_8335#0      ATATCAG----------------------------------------------------- 756
                                                                                  

consensus_8335#1      GTAAAAACAGAATGATAATAATA 645
consensus_8335#2      -----------------------
consensus_8335#0      -----------------------