These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8340#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 657 fasta sequence [NATTTCGGCACGAGGACTTCCCTAATAAATCGTCCAGGCTATTAGTCCTAAATGTAGAAGGCCATTTCAACTCTCCCTACTCTTCCACTAATCTTATTTTTGGATGAACAAAGGTTTTCCGACCGAAACAGCGTAGTTTCATATACTTACTGTATTCATTCGTCACAGTAATTATGAACTACCATGACAATGACCACACTGAAATAACCCAAGCTGATGAACGCAAGATGCCTACGTGTTTACTAGAAGACGAAAGTCAACGAATAAGCTGCGTGGAGTATATTAAGCAGTATGATATCTCACAGCTGGCTCAAATGTTGGCACACAGTGCTGAGGAGTTCGTACGTCATGTTTGGCTCAGAGGTTGGCGAGTAGTTAATCATCACAGTCTTCCTGCATGGTTGCGTGACAATGATTACATTTTGCATTATCATCGACCTCAGTTAAACACCTTTTGGGCTTGTTTCAAGTCCATTTTCAGAGTGCATACAGAAACGGGAAATATATGGACTCATTTGTTGGGGTGTGGGAGCTTTTTTGCCATTACAGTCTTCATGTTAATTCAGTCAGGGACTCTACTACAATGGCAAGATAAGCTTGTATTTTCTACATTCTTTTTCGGTGCTATTGTTNGTCTCGGTCTTTCCTGTTTATTTC] [+] EMBL CD082201 [NATTTCGGCACGAGGACTTCCCTAATAAATCGTCCAGGCTATTAGTCCTAAATGTAGAAGGCCATTTCAACTCTCCCTACTCTTCCACTAATCTTATTTTTGGATGAACAAAGGTTTTCCGACCGAAACAGCGTAGTTTCATATACTTACTGTATTCATTCGTCACAGTAATTATGAACTACCATGACAATGACCACACTGAAATAACCCAAGCTGATGAACGCAAGATGCCTACGTGTTTACTAGAAGACGAAAGTCAACGAATAAGCTGCGTGGAGTATATTAAGCAGTATGATATCTCACAGCTGGCTCAAATGTTGGCACACAGTGCTGAGGAGTTCGTACGTCATGTTTGGCTCAGAGGTTGGCGAGTAGTTAATCATCACAGTCTTCCTGCATGGTTGCGTGACAATGATTACATTTTGCATTATCATCGACCTCAGTTAAACACCTTTTGGGCTTGTTTCAAGTCCATTTTCAGAGTGCATACAGAAACGGGAAATATATGGACTCATTTGTTGGGGTGTGGGAGCTTTTTTGCCATTACAGTCTTCATGTTAATTCAGTCAGGGACTCTACTACAATGGCAAGATAAGCTTGTATTTTCTACATTCTTTTTCGGTGCTATTGTTNGTCTCGGTCTTTCCTGTTTATTTC] [-] EMBL CD132265 [ GTAGGAGGCCATTTCAACTCTCCCTACTCTTCCACTAATCTTATTTTTGGATGAACAAAGGTTTTCCGACCGAAACAGCGTAGTTTCATATACTTACTGTATTCATTCGTCACAGTAATTATGAACTACCATGACAATGACCACACTGAAATAACCCAAGCTGATGAACGCAAGATGCCTACGTGTTTACTAGAAGACGAAAGTCAACGAATAAGCTGCGTGGAGTATATTAAGCAGTATGATATCTCACAGCTGGCTCAAATGTTGGCACACAGTGCTGAGGAGTTCGTACGTCATGTTTGGCTCAGAGGTTGGCGAGTAGTTAATCATCACAGTCTTCCTGCATGGTTGCGTGACAATGATTACATTTTGCATTATCATCGACCTCAGTTAAACACCTTTTGGGCTTGTTTCAAGTCCATTTTCA ] consensusID : consensus_8340#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 446 fasta sequence [TGGATTGACCTTGGAGCACAGTTTAAATGTTCCCTCAATGTATATAATATGTTGAATATAATCTCATATTCTGGGTGTTGACCACCAAACAAATAGAAAACCCATATTAAACTAGCGTTCTAATTAAATCGTCCAGGCTATTAGTCCTAAATGTAGAAGGCCATTTCAACTCTCCCTACTCTTCCACTAATCTTATTTTTGGATGAACAAAGGTTTTCCGACCGAAACAGCGTAGTTTCATATACTTACTGTATTCATTCGTCACAGTAATTATGAACTACCATGACAATGACCACACTGAAATAACCCAAGCTGATGAACGCAAGATGCCTACGTGTTTACTAGAAGACGAAAGTCAACGAATAAGCTGCGTGGAGTATATTAAGCAGTATGATATCTCACAGCTGGCTCAAATGTTGGCACACAGTGCTGAGGAGTTCGTACGT] [-] EMBL CD120915 [TGGATTGACCTTGGAGCACAGTTTAAATGTTCCCTCAATGTATATAATATGTTGAATATAATCTCATATTCTGGGTGTTGACCACCAAACAAATAGAAAACCCATATTAAACTAGCGTTCTAATTAAATCGTCCAGGCTATTAGTCCTAAATGTAGAAGGCCATTTCAACTCTCCCTACTCTTCCACTAATCTTATTTTTGGATGAACAAAGGTTTTCCGACCGAAACAGCGTAGTTTCATATACTTACTGTATTCATTCGTCACAGTAATTATGAACTACCATGACAATGACCACACT ] [-] EMBL CD120929 [TGGATTGACCTTGGAGCACAGTTTAAATGTTCCCTCAATGTATATAATATGTTGAATATAATCTCATATTCTGGGTGTTGACCACCAAACAAATAGAAAACCCATATTAAACTAGCGTTCTAATTAAATCGTCCAGGCTATTAGTCCTAAATGTAGAAGGCCATTTCAACTCTCCCTACTCTTCCACTAATCTTATTTTTGGATGAACAAAGGTTTTCCGACCGAAACAGCGTAGTTTCATATACTTACTGTATTCATTCGTCACAGTAATTATGAACTACCATGACAATGACCACACT ] [-] EMBL CD185787 [ GGATTGACCTTGGAGCACAGTTTAAATGTTCCCTCAATGTATATAATATGTTGAATATAATCTCATATTCTGGGTGTTGACCACCAAACAAATAGAAAACCCATATTAAACTAGCGTTCTAATTAAATCGTCCAGGCTATTAGTCCTAAATGTAGAAGGCCATTTCAACTCTCCCAACTCTTCCACTAATCTTATTTTTGGATGAACAAAGGTTTTCCGACCGAAACAGCGTAGTTTCATATACTTACTGTATTCATTCGTCACAGTAATTATGAACTACCATGACAATGACCACACTGAAATAACCCAAGCTGATGAACGCAAGATGCCTACGTGTTTACTAGAAGACGAAAGTCAACGAATAAGCTGCGTGGAGTATATTAAGCAGTATGATATCTCACAGCTGGCTCAAATGTTGGCACACAGTGCTGAGGAGTTCGTACGT] [-] EMBL CD186000 [ GGATTGACCTTGGAGCACAGTTTAAATGTTCCCTCAATGTATATAATATGTTGAATATAATCTCATATTCTGGGTGTTGACCACCAAACAAATAGAAAACCCATATTAAACTAGCGTTCTAATTAAATCGTCCAGGCTATTAGTCCTAAATGTAGAAGGCCATTTCAACTCTCCCAACTCTTCCACTAATCTTATTTTTGGATGAACAAAGGTTTTCCGACCGAAACAGCGTAGTTTCATATACTTACTGTATTCATTCGTCACAGTAATTATGAACTACCATGACAATGACCACACTGAAATAACCCAAGCTGATGAACGCAAGATGCCTACGTGTTTACTAGAAGACGAAAGTCAACGAATAAGCTGCGTGGAGTATATTAAGCAGTATGATATCTCACAGCTGGCTCAAATGTTGGCACACAGTGCTGAGGAGTTCGTACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8340#0 ------------------------------------------------------------ consensus_8340#1 TGGATTGACCTTGGAGCACAGTTTAAATGTTCCCTCAATGTATATAATATGTTGAATATA 60 consensus_8340#0 ---------------------------------------NATTTCGGCACGAGGACTTCC 21 consensus_8340#1 ATCTCATATTCTGGGTGTTGACCACCAAACAAATAGAAAACCCATATTAAACTAGCGTTC 120 * * * * consensus_8340#0 CTAATAAATCGTCCAGGCTATTAGTCCTAAATGTAGAAGGCCATTTCAACTCTCCCTACT 81 consensus_8340#1 TAATTAAATCGTCCAGGCTATTAGTCCTAAATGTAGAAGGCCATTTCAACTCTCCCTACT 180 * ******************************************************** consensus_8340#0 CTTCCACTAATCTTATTTTTGGATGAACAAAGGTTTTCCGACCGAAACAGCGTAGTTTCA 141 consensus_8340#1 CTTCCACTAATCTTATTTTTGGATGAACAAAGGTTTTCCGACCGAAACAGCGTAGTTTCA 240 ************************************************************ consensus_8340#0 TATACTTACTGTATTCATTCGTCACAGTAATTATGAACTACCATGACAATGACCACACTG 201 consensus_8340#1 TATACTTACTGTATTCATTCGTCACAGTAATTATGAACTACCATGACAATGACCACACTG 300 ************************************************************ consensus_8340#0 AAATAACCCAAGCTGATGAACGCAAGATGCCTACGTGTTTACTAGAAGACGAAAGTCAAC 261 consensus_8340#1 AAATAACCCAAGCTGATGAACGCAAGATGCCTACGTGTTTACTAGAAGACGAAAGTCAAC 360 ************************************************************ consensus_8340#0 GAATAAGCTGCGTGGAGTATATTAAGCAGTATGATATCTCACAGCTGGCTCAAATGTTGG 321 consensus_8340#1 GAATAAGCTGCGTGGAGTATATTAAGCAGTATGATATCTCACAGCTGGCTCAAATGTTGG 420 ************************************************************ consensus_8340#0 CACACAGTGCTGAGGAGTTCGTACGTCATGTTTGGCTCAGAGGTTGGCGAGTAGTTAATC 381 consensus_8340#1 CACACAGTGCTGAGGAGTTCGTACGT---------------------------------- 446 ************************** consensus_8340#0 ATCACAGTCTTCCTGCATGGTTGCGTGACAATGATTACATTTTGCATTATCATCGACCTC 441 consensus_8340#1 ------------------------------------------------------------ consensus_8340#0 AGTTAAACACCTTTTGGGCTTGTTTCAAGTCCATTTTCAGAGTGCATACAGAAACGGGAA 501 consensus_8340#1 ------------------------------------------------------------ consensus_8340#0 ATATATGGACTCATTTGTTGGGGTGTGGGAGCTTTTTTGCCATTACAGTCTTCATGTTAA 561 consensus_8340#1 ------------------------------------------------------------ consensus_8340#0 TTCAGTCAGGGACTCTACTACAATGGCAAGATAAGCTTGTATTTTCTACATTCTTTTTCG 621 consensus_8340#1 ------------------------------------------------------------ consensus_8340#0 GTGCTATTGTTNGTCTCGGTCTTTCCTGTTTATTTC 657 consensus_8340#1 ------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||