cluster # 8340

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Schistosoma mansoni
cluster # 8340 cluster # 8340 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8340#0 length = 657 sequences # 2

consensus_8340#1 length = 446 sequences # 4

consensusID : consensus_8340#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 657
fasta sequence

                              [NATTTCGGCACGAGGACTTCCCTAATAAATCGTCCAGGCTATTAGTCCTAAATGTAGAAGGCCATTTCAACTCTCCCTACTCTTCCACTAATCTTATTTTTGGATGAACAAAGGTTTTCCGACCGAAACAGCGTAGTTTCATATACTTACTGTATTCATTCGTCACAGTAATTATGAACTACCATGACAATGACCACACTGAAATAACCCAAGCTGATGAACGCAAGATGCCTACGTGTTTACTAGAAGACGAAAGTCAACGAATAAGCTGCGTGGAGTATATTAAGCAGTATGATATCTCACAGCTGGCTCAAATGTTGGCACACAGTGCTGAGGAGTTCGTACGTCATGTTTGGCTCAGAGGTTGGCGAGTAGTTAATCATCACAGTCTTCCTGCATGGTTGCGTGACAATGATTACATTTTGCATTATCATCGACCTCAGTTAAACACCTTTTGGGCTTGTTTCAAGTCCATTTTCAGAGTGCATACAGAAACGGGAAATATATGGACTCATTTGTTGGGGTGTGGGAGCTTTTTTGCCATTACAGTCTTCATGTTAATTCAGTCAGGGACTCTACTACAATGGCAAGATAAGCTTGTATTTTCTACATTCTTTTTCGGTGCTATTGTTNGTCTCGGTCTTTCCTGTTTATTTC]

[+] EMBL CD082201             [NATTTCGGCACGAGGACTTCCCTAATAAATCGTCCAGGCTATTAGTCCTAAATGTAGAAGGCCATTTCAACTCTCCCTACTCTTCCACTAATCTTATTTTTGGATGAACAAAGGTTTTCCGACCGAAACAGCGTAGTTTCATATACTTACTGTATTCATTCGTCACAGTAATTATGAACTACCATGACAATGACCACACTGAAATAACCCAAGCTGATGAACGCAAGATGCCTACGTGTTTACTAGAAGACGAAAGTCAACGAATAAGCTGCGTGGAGTATATTAAGCAGTATGATATCTCACAGCTGGCTCAAATGTTGGCACACAGTGCTGAGGAGTTCGTACGTCATGTTTGGCTCAGAGGTTGGCGAGTAGTTAATCATCACAGTCTTCCTGCATGGTTGCGTGACAATGATTACATTTTGCATTATCATCGACCTCAGTTAAACACCTTTTGGGCTTGTTTCAAGTCCATTTTCAGAGTGCATACAGAAACGGGAAATATATGGACTCATTTGTTGGGGTGTGGGAGCTTTTTTGCCATTACAGTCTTCATGTTAATTCAGTCAGGGACTCTACTACAATGGCAAGATAAGCTTGTATTTTCTACATTCTTTTTCGGTGCTATTGTTNGTCTCGGTCTTTCCTGTTTATTTC]
[-] EMBL CD132265             [                                                     GTAGGAGGCCATTTCAACTCTCCCTACTCTTCCACTAATCTTATTTTTGGATGAACAAAGGTTTTCCGACCGAAACAGCGTAGTTTCATATACTTACTGTATTCATTCGTCACAGTAATTATGAACTACCATGACAATGACCACACTGAAATAACCCAAGCTGATGAACGCAAGATGCCTACGTGTTTACTAGAAGACGAAAGTCAACGAATAAGCTGCGTGGAGTATATTAAGCAGTATGATATCTCACAGCTGGCTCAAATGTTGGCACACAGTGCTGAGGAGTTCGTACGTCATGTTTGGCTCAGAGGTTGGCGAGTAGTTAATCATCACAGTCTTCCTGCATGGTTGCGTGACAATGATTACATTTTGCATTATCATCGACCTCAGTTAAACACCTTTTGGGCTTGTTTCAAGTCCATTTTCA                                                                                                                                                                                 ]




>consensus_8340#0
NATTTCGGCACGAGGACTTCCCTAATAAATCGTCCAGGCTATTAGTCCTAAATGTAGAAG
GCCATTTCAACTCTCCCTACTCTTCCACTAATCTTATTTTTGGATGAACAAAGGTTTTCC
GACCGAAACAGCGTAGTTTCATATACTTACTGTATTCATTCGTCACAGTAATTATGAACT
ACCATGACAATGACCACACTGAAATAACCCAAGCTGATGAACGCAAGATGCCTACGTGTT
TACTAGAAGACGAAAGTCAACGAATAAGCTGCGTGGAGTATATTAAGCAGTATGATATCT
CACAGCTGGCTCAAATGTTGGCACACAGTGCTGAGGAGTTCGTACGTCATGTTTGGCTCA
GAGGTTGGCGAGTAGTTAATCATCACAGTCTTCCTGCATGGTTGCGTGACAATGATTACA
TTTTGCATTATCATCGACCTCAGTTAAACACCTTTTGGGCTTGTTTCAAGTCCATTTTCA
GAGTGCATACAGAAACGGGAAATATATGGACTCATTTGTTGGGGTGTGGGAGCTTTTTTG
CCATTACAGTCTTCATGTTAATTCAGTCAGGGACTCTACTACAATGGCAAGATAAGCTTG
TATTTTCTACATTCTTTTTCGGTGCTATTGTTNGTCTCGGTCTTTCCTGTTTATTTC

consensusID : consensus_8340#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 446
fasta sequence

                              [TGGATTGACCTTGGAGCACAGTTTAAATGTTCCCTCAATGTATATAATATGTTGAATATAATCTCATATTCTGGGTGTTGACCACCAAACAAATAGAAAACCCATATTAAACTAGCGTTCTAATTAAATCGTCCAGGCTATTAGTCCTAAATGTAGAAGGCCATTTCAACTCTCCCTACTCTTCCACTAATCTTATTTTTGGATGAACAAAGGTTTTCCGACCGAAACAGCGTAGTTTCATATACTTACTGTATTCATTCGTCACAGTAATTATGAACTACCATGACAATGACCACACTGAAATAACCCAAGCTGATGAACGCAAGATGCCTACGTGTTTACTAGAAGACGAAAGTCAACGAATAAGCTGCGTGGAGTATATTAAGCAGTATGATATCTCACAGCTGGCTCAAATGTTGGCACACAGTGCTGAGGAGTTCGTACGT]

[-] EMBL CD120915             [TGGATTGACCTTGGAGCACAGTTTAAATGTTCCCTCAATGTATATAATATGTTGAATATAATCTCATATTCTGGGTGTTGACCACCAAACAAATAGAAAACCCATATTAAACTAGCGTTCTAATTAAATCGTCCAGGCTATTAGTCCTAAATGTAGAAGGCCATTTCAACTCTCCCTACTCTTCCACTAATCTTATTTTTGGATGAACAAAGGTTTTCCGACCGAAACAGCGTAGTTTCATATACTTACTGTATTCATTCGTCACAGTAATTATGAACTACCATGACAATGACCACACT                                                                                                                                                   ]
[-] EMBL CD120929             [TGGATTGACCTTGGAGCACAGTTTAAATGTTCCCTCAATGTATATAATATGTTGAATATAATCTCATATTCTGGGTGTTGACCACCAAACAAATAGAAAACCCATATTAAACTAGCGTTCTAATTAAATCGTCCAGGCTATTAGTCCTAAATGTAGAAGGCCATTTCAACTCTCCCTACTCTTCCACTAATCTTATTTTTGGATGAACAAAGGTTTTCCGACCGAAACAGCGTAGTTTCATATACTTACTGTATTCATTCGTCACAGTAATTATGAACTACCATGACAATGACCACACT                                                                                                                                                   ]
[-] EMBL CD185787             [ GGATTGACCTTGGAGCACAGTTTAAATGTTCCCTCAATGTATATAATATGTTGAATATAATCTCATATTCTGGGTGTTGACCACCAAACAAATAGAAAACCCATATTAAACTAGCGTTCTAATTAAATCGTCCAGGCTATTAGTCCTAAATGTAGAAGGCCATTTCAACTCTCCCAACTCTTCCACTAATCTTATTTTTGGATGAACAAAGGTTTTCCGACCGAAACAGCGTAGTTTCATATACTTACTGTATTCATTCGTCACAGTAATTATGAACTACCATGACAATGACCACACTGAAATAACCCAAGCTGATGAACGCAAGATGCCTACGTGTTTACTAGAAGACGAAAGTCAACGAATAAGCTGCGTGGAGTATATTAAGCAGTATGATATCTCACAGCTGGCTCAAATGTTGGCACACAGTGCTGAGGAGTTCGTACGT]
[-] EMBL CD186000             [ GGATTGACCTTGGAGCACAGTTTAAATGTTCCCTCAATGTATATAATATGTTGAATATAATCTCATATTCTGGGTGTTGACCACCAAACAAATAGAAAACCCATATTAAACTAGCGTTCTAATTAAATCGTCCAGGCTATTAGTCCTAAATGTAGAAGGCCATTTCAACTCTCCCAACTCTTCCACTAATCTTATTTTTGGATGAACAAAGGTTTTCCGACCGAAACAGCGTAGTTTCATATACTTACTGTATTCATTCGTCACAGTAATTATGAACTACCATGACAATGACCACACTGAAATAACCCAAGCTGATGAACGCAAGATGCCTACGTGTTTACTAGAAGACGAAAGTCAACGAATAAGCTGCGTGGAGTATATTAAGCAGTATGATATCTCACAGCTGGCTCAAATGTTGGCACACAGTGCTGAGGAGTTCGTACGT]




>consensus_8340#1
TGGATTGACCTTGGAGCACAGTTTAAATGTTCCCTCAATGTATATAATATGTTGAATATA
ATCTCATATTCTGGGTGTTGACCACCAAACAAATAGAAAACCCATATTAAACTAGCGTTC
TAATTAAATCGTCCAGGCTATTAGTCCTAAATGTAGAAGGCCATTTCAACTCTCCCTACT
CTTCCACTAATCTTATTTTTGGATGAACAAAGGTTTTCCGACCGAAACAGCGTAGTTTCA
TATACTTACTGTATTCATTCGTCACAGTAATTATGAACTACCATGACAATGACCACACTG
AAATAACCCAAGCTGATGAACGCAAGATGCCTACGTGTTTACTAGAAGACGAAAGTCAAC
GAATAAGCTGCGTGGAGTATATTAAGCAGTATGATATCTCACAGCTGGCTCAAATGTTGG
CACACAGTGCTGAGGAGTTCGTACGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8340#0      ------------------------------------------------------------
consensus_8340#1      TGGATTGACCTTGGAGCACAGTTTAAATGTTCCCTCAATGTATATAATATGTTGAATATA 60
                                                                                  

consensus_8340#0      ---------------------------------------NATTTCGGCACGAGGACTTCC 21
consensus_8340#1      ATCTCATATTCTGGGTGTTGACCACCAAACAAATAGAAAACCCATATTAAACTAGCGTTC 120
                                                                      *      * * *

consensus_8340#0      CTAATAAATCGTCCAGGCTATTAGTCCTAAATGTAGAAGGCCATTTCAACTCTCCCTACT 81
consensus_8340#1      TAATTAAATCGTCCAGGCTATTAGTCCTAAATGTAGAAGGCCATTTCAACTCTCCCTACT 180
                        * ********************************************************

consensus_8340#0      CTTCCACTAATCTTATTTTTGGATGAACAAAGGTTTTCCGACCGAAACAGCGTAGTTTCA 141
consensus_8340#1      CTTCCACTAATCTTATTTTTGGATGAACAAAGGTTTTCCGACCGAAACAGCGTAGTTTCA 240
                      ************************************************************

consensus_8340#0      TATACTTACTGTATTCATTCGTCACAGTAATTATGAACTACCATGACAATGACCACACTG 201
consensus_8340#1      TATACTTACTGTATTCATTCGTCACAGTAATTATGAACTACCATGACAATGACCACACTG 300
                      ************************************************************

consensus_8340#0      AAATAACCCAAGCTGATGAACGCAAGATGCCTACGTGTTTACTAGAAGACGAAAGTCAAC 261
consensus_8340#1      AAATAACCCAAGCTGATGAACGCAAGATGCCTACGTGTTTACTAGAAGACGAAAGTCAAC 360
                      ************************************************************

consensus_8340#0      GAATAAGCTGCGTGGAGTATATTAAGCAGTATGATATCTCACAGCTGGCTCAAATGTTGG 321
consensus_8340#1      GAATAAGCTGCGTGGAGTATATTAAGCAGTATGATATCTCACAGCTGGCTCAAATGTTGG 420
                      ************************************************************

consensus_8340#0      CACACAGTGCTGAGGAGTTCGTACGTCATGTTTGGCTCAGAGGTTGGCGAGTAGTTAATC 381
consensus_8340#1      CACACAGTGCTGAGGAGTTCGTACGT---------------------------------- 446
                      **************************                                  

consensus_8340#0      ATCACAGTCTTCCTGCATGGTTGCGTGACAATGATTACATTTTGCATTATCATCGACCTC 441
consensus_8340#1      ------------------------------------------------------------
                                                                                  

consensus_8340#0      AGTTAAACACCTTTTGGGCTTGTTTCAAGTCCATTTTCAGAGTGCATACAGAAACGGGAA 501
consensus_8340#1      ------------------------------------------------------------
                                                                                  

consensus_8340#0      ATATATGGACTCATTTGTTGGGGTGTGGGAGCTTTTTTGCCATTACAGTCTTCATGTTAA 561
consensus_8340#1      ------------------------------------------------------------
                                                                                  

consensus_8340#0      TTCAGTCAGGGACTCTACTACAATGGCAAGATAAGCTTGTATTTTCTACATTCTTTTTCG 621
consensus_8340#1      ------------------------------------------------------------
                                                                                  

consensus_8340#0      GTGCTATTGTTNGTCTCGGTCTTTCCTGTTTATTTC 657
consensus_8340#1      ------------------------------------