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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8341#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1058 fasta sequence
[CCTTGTAACTTTAGTTTGAAAAGGTTTTCCAACAGTTAATTCTTACAATACAAAATGACGACGGAAGATCCAAAAGTATTATATCCCCTGCATTACCATGTTTGGAATAATGATTATATGGCTTTGGATGAACTACTTCACCAAAAAAAGCATGATATAGAGAAACTGGATCCTCATGGAAGAACCCCATTGATGTTATGCATTGTACTTGATCATTTAGAGTCTGCACGAGTTTTACTCCGCCAT-GGTGCAAACGCTTGCGTTTCTACTAGTAAATTCTGGACAGCTGCACAGGAGGCCATTGCAACAGGGGACCCTGAACTTGTTAAACTAATCTTGGTTCATAGAGACGCTCAAATTGTTCGTCACCAGGCTGTTATAGTTGCAGATTTGCTTCAGAAGCTCAGAGAAACCCCCGATTTTTATATTGAAATGAAATGGGAGTTCACTAGTTGGTTACCACTTGTATCGCGTATGTGCCCAAGTGATGTTTGTCGGGTATGGAAATGTGGATCAAATGTTAGAATTGATACGAATTTACTTGGATTTAATGGCTCAGCATCATGGGTTCGCGGTCATCTGAGCTATATGTTTAGAGCTGGAGAATCTGGAGCATATATGGATGAAGTAAATCACACTGATCGAACTATNTATCGGCATAATGTGAATNTACTTAATCGGCCTGATGGGGTGGATAATACACCAGGTGCTGGGAGTGGTGCAGGTGCTGCAGCTACTGCTGCTGCCCAGCTCCTTGTACGTGAACCTTCAGAAAGTACCATTGCAAACAAATTAACTCAACCTATCTTCGTTACATATTTGGATACAGATAAAATAGAGTTTGAGAAAAGCAAATCGGGATTTTTAGGTTGGCGATCAGATCGTAAAGAAACTATTAACAATCATCCTTTTCAAGTATACTGTGCATCGAATGTACAAATCATTACATTACGTAGTACGGAACATTTAACTGAAGAAAATCTACGTGATCTTAATCAACAGCACAATTCTAATGATAATGAACATGGTGGTGCAGGTGGTGGTGTTTGTGGTGATGA]
[+] EMBL CD133303 [CCTTGTAACTTTAGTTTGAAAAGGTTTTCCAACAGTTAATTCTTACAATACAAAATGACGACGGAAGATCCAAAAGTATTATATCCCCTGCATTACCATGTTTGGAATAATGATTATATGGCTTTGGATGAACTACTTCACCAAAAAAAGCATGATATAGAGAAACTGGATCCTCATGGAAGAACCCCATTGATGTTATGCATTGTACTTGATCATTTAGAGTCTGCACGAGTTTTACTCCGCCAT GGTGCAAACGCTTGCGTTTCTACTAGTAAATTCTGGACAGCTGCACAGGAGGCCATTGCAACAGGGGACCCTGAACTTGTTAAACTAATCTTGGTTCATAGAGACGCTCAAA ]
[+] EMBL CD185552 [ ACTTCACCAAAAAAAGCATGATATAGAGAAACTGGATCCTCATGGAAGAACCCCATTGACGTTATGCATTGTACTTGATCATTTAGAGTCTGCACGAGTTTTACTCCGCCAT GGTGCAAACGCTTGCGTTTCTACTAGTAAATTCTGGACAGCTGCACAGGAGGCCATTGCAACAGGGGACCCTGAACTTGTTAAACTAATCTTGGTTCATAGAGACGCTCAAATTGTTCGTCACCAGGCTGTTATAGTTGCAGATTTGCTTCAGAAGCTCAGAGAAACCCCCGATTTTTATATTGAAATGAAATGGGAGTTCACTAGTTGGTTACCACTTGTATCGCGTATGTGCCCAAGTGATGTTTGTCGGGTATGGAAATGTGGATCAAATGTTAGAATTGATACGAATTTACTTGGATTTAATGGCTCAGCATCATGGGTTCGCGGTCATCTGAGCTATATGTTTAGAGCTGGAGAATCTGGAGCATATATGGATGAAGTAAATCACACTGATCGAACTATNTATCGGCATAATGTGAATNTACTTAATCGGCCTGATGGGGTGGAT ATACACCANGTGCTGGGAGTGGTG ]
[+] EMBL CD130997 [ tccaCCGCCATGGGTGCAAACGCTTGCGTTTCTACTAGTAAATTCTGGACAGCTGCACAGGAGGCCATTGCAACAGGGGACCCTGAACTTGTTAAACTAATCTTGGTTCATAGAGACGCTCAAATTGTTCGTCACCAGGCTGTTATAGTTGCAGATTTGCTTCAGAAGCTCAGAGAAACCCCCGATTTTTATATTGAAATGAAATGGGAGTTCACTAGTTGGTTACCACTTGTATCGCGTATGTGCCCAAGTGATGTTTGTCGGGTATGGAAATGTGGATCAAATGTTAGAATTGATACGAATTTACTTGGATTTAATGGCTCAGCATCATGGGTTCGCGGTCATCTGAGCTATATGTTTAGAGCTGGAGAATCTGGAGCATATATGG ]
[+] EMBL CD193162 [ GCAACAGGGGACCCTGAACTTGTTAAACTAATCTTGGTTCATAGAGACGCTCAAATTGTTCGTCACCAGGCTGTTATAGTTGCAGATTTGCTTCAGAAGCTCAGAGAAACCCCCGATTTTTATATTGAAATGAAATGGGAGTTCACTAGTTGGTTACCACTTGTATCGCGTATGTGCCCAAGTGATGTTTGTCGGGTATGGAAATGTGGATCAAATGTTAGAATTGATACGAATTTACTTGGATTTAATGGCTCAGCATCATGGGTTCGCGGTCATCTGAGCTATATGTTTAGAGCTGGAGAATCTGGAGCATATATGGATGAGGTAAATCACACTGATCGAACTATTTATCGGCATAATGTGAATTTACTTAATCGGCCTGATGGGGTGGATAATACACCAGGTGCTGGGAGTGGTGCAGGTGCTGCAGCTACTGCTGCTGCCCAGCTCCTTGTACGTGAACCTTCAGAAAGTACCATTGCAAACAAATTAACTCAACCTATCTTCGTTACATATTTGGATACAGATAAAATAGAGTTTGAGAAAAGCAAATCGGGATTTTTAGGTTGGCGATCAGATCGTAAAGAAACTATTAACAATCATCCTTT ]
[+] EMBL CD189234 [ AATACACCAGGTGCTGGGAGTGGTGCAGGTGCTGCAGCTACTGCTGCTGCCCAGCTCTTTGTACGTGAACCTTCAGAAAGTACCATTGCAAACAAATTAACTCAACCTATCTTCGTTACATATTTGGATACAGATAAAATAGAGCTTGAGAAAAGCAAATCGGGATTTTTAGGTTGGCGATCAGATCGTAAAGAAACTATTAACAATCATCCTTGTCAAGTATACTGTGCATCGAATGTACAAATCATTACATTACGTAGTACGGAACATTTAACTGAAGAAAATCTACGTGATCTTAATCAACAGCACAATTCTAATGATAATGAACATGGTGGTGCAGGTGGTGGTGTTTGTGGTGATGA]
consensusID : consensus_8341#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence
[CTTTGGGCAGATCTCGAAATCGAGCCCTTTTACTCCGCCATGGTGCAAACGCGTTGCGTTCTACTAGTAAATTCTGGACAGCTGCACAGGAGGCCATTGCAACAGGGGACCCTGAACTTGTTAAACTAATCTTGGTTCATAGAGACGCTCAAATTGTTCGTCACCAGGCTGTTATAGTTGCAGATTTGCTTCAGAAGCTCAGAGAAACCCCCGATTTTTATATTGAAATGAAATGGGAGTTCACTAGTTGGTTACCACTTGTATCGCGTATGTGCCCAAGTGATGTCTGTCGGGTATGGAAATGTGGATCAAATGTTAGAATTGATACGAATTTACTTGGATTTAATGGCTCAGCATCATGGGTTCGCGGTCATCTGAGCTATATGTTTAGGGCTGGAGAATCTGGAGCATATATGGATGAAGTAAATCACACTGATCGAACTATTTATCGGACTTATGTGCATT]
[+] EMBL CD060849 [CTTTGGGCAGATCTCGAAATCGAGCCCTTTTACTCCGCCATGGTGCAAACGCGTTGCGTTCTACTAGTAAATTCTGGACAGCTGCACAGGAGGCCATTGCAACAGGGGACCCTGAACTTGTTAAACTAATCTTGGTTCATAGAGACGCTCAAATTGTTCGTCACCAGGCTGTTATAGTTGCAGATTTGCTTCAGAAGCTCAGAGAAACCCCCGATTTTTATATTGAAATGAAATGGGAGTTCACTAGTTGGTTACCACTTGTATCGCGTATGTGCCCAAGTGATGTCTGTCGGGTATGGAAATGTGGATCAAATGTTAGAATTGATACGAATTTACTTGGATTTAATGGCTCAGCATCATGGGTTCGCGGTCATCTGAGCTATATGTTTAGGGCTGGAGAATCTGGAGCATATATGGATGAAGTAAATCACACTGATCGAACTATTTATCGGACTTATGTGCATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8341#0 CCTTGTAACTTTAGTTTGAAAAGGTTTTCCAACAGTTAATTCTTACAATACAAAATGACG 60
consensus_8341#1 ------------------------------------------------------------
consensus_8341#0 ACGGAAGATCCAAAAGTATTATATCCCCTGCATTACCATGTTTGGAATAATGATTATATG 120
consensus_8341#1 ------------------------------------------------------------
consensus_8341#0 GCTTTGGATGAACTACTTCACCAAAAAAAGCATGATATAGAGAAACTGGATCCTCATGGA 180
consensus_8341#1 ------------------------------------------------------------
consensus_8341#0 AGAACCCCATTGATGTTATGCATTGTACTTGATCATTTAGAGTCTGCACGAGTTTTACTC 240
consensus_8341#1 --------------------CTTTGGGCA-GATC--TCGAAATCGAGCC--CTTTTACTC 35
* *** * **** * * ** * ********
consensus_8341#0 CGCCATGGTGCAAACGC-TTGCGTTTCTACTAGTAAATTCTGGACAGCTGCACAGGAGGC 299
consensus_8341#1 CGCCATGGTGCAAACGCGTTGCGTT-CTACTAGTAAATTCTGGACAGCTGCACAGGAGGC 94
***************** ******* **********************************
consensus_8341#0 CATTGCAACAGGGGACCCTGAACTTGTTAAACTAATCTTGGTTCATAGAGACGCTCAAAT 359
consensus_8341#1 CATTGCAACAGGGGACCCTGAACTTGTTAAACTAATCTTGGTTCATAGAGACGCTCAAAT 154
************************************************************
consensus_8341#0 TGTTCGTCACCAGGCTGTTATAGTTGCAGATTTGCTTCAGAAGCTCAGAGAAACCCCCGA 419
consensus_8341#1 TGTTCGTCACCAGGCTGTTATAGTTGCAGATTTGCTTCAGAAGCTCAGAGAAACCCCCGA 214
************************************************************
consensus_8341#0 TTTTTATATTGAAATGAAATGGGAGTTCACTAGTTGGTTACCACTTGTATCGCGTATGTG 479
consensus_8341#1 TTTTTATATTGAAATGAAATGGGAGTTCACTAGTTGGTTACCACTTGTATCGCGTATGTG 274
************************************************************
consensus_8341#0 CCCAAGTGATGTTTGTCGGGTATGGAAATGTGGATCAAATGTTAGAATTGATACGAATTT 539
consensus_8341#1 CCCAAGTGATGTCTGTCGGGTATGGAAATGTGGATCAAATGTTAGAATTGATACGAATTT 334
************ ***********************************************
consensus_8341#0 ACTTGGATTTAATGGCTCAGCATCATGGGTTCGCGGTCATCTGAGCTATATGTTTAGAGC 599
consensus_8341#1 ACTTGGATTTAATGGCTCAGCATCATGGGTTCGCGGTCATCTGAGCTATATGTTTAGGGC 394
********************************************************* **
consensus_8341#0 TGGAGAATCTGGAGCATATATGGATGAAGTAAATCACACTGATCGAACTATNTATCGGCA 659
consensus_8341#1 TGGAGAATCTGGAGCATATATGGATGAAGTAAATCACACTGATCGAACTATTTATCGGAC 454
*************************************************** ******
consensus_8341#0 TAATGTGAATNTACTTAATCGGCCTGATGGGGTGGATAATACACCAGGTGCTGGGAGTGG 719
consensus_8341#1 TTATGTGCATT------------------------------------------------- 465
* ***** **
consensus_8341#0 TGCAGGTGCTGCAGCTACTGCTGCTGCCCAGCTCCTTGTACGTGAACCTTCAGAAAGTAC 779
consensus_8341#1 ------------------------------------------------------------
consensus_8341#0 CATTGCAAACAAATTAACTCAACCTATCTTCGTTACATATTTGGATACAGATAAAATAGA 839
consensus_8341#1 ------------------------------------------------------------
consensus_8341#0 GTTTGAGAAAAGCAAATCGGGATTTTTAGGTTGGCGATCAGATCGTAAAGAAACTATTAA 899
consensus_8341#1 ------------------------------------------------------------
consensus_8341#0 CAATCATCCTTTTCAAGTATACTGTGCATCGAATGTACAAATCATTACATTACGTAGTAC 959
consensus_8341#1 ------------------------------------------------------------
consensus_8341#0 GGAACATTTAACTGAAGAAAATCTACGTGATCTTAATCAACAGCACAATTCTAATGATAA 1019
consensus_8341#1 ------------------------------------------------------------
consensus_8341#0 TGAACATGGTGGTGCAGGTGGTGGTGTTTGTGGTGATGA 1058
consensus_8341#1 ---------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||