These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8344#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 766 fasta sequence [GATTATATTGGTATATTTAAAACCTATTCCGACGACTCTGACTCAAACCATTCTTATGAAACCGTTGTGTCAAATGGTAAAATATCGAAAGAGATGGAAGATTGTATTTTAGTTCAAGCAAATAAACCATTGCCAGATTGTCTAGCTGAATTTTATACTCCACCAACAGAGTTAGTTTATAGCAATAAATCTAGTACACGTCCTAGTCTATCATTGGAAAATGCCGTAAGTTGGACAGTACATTGTCGAATTTCTGGAGTCAATCAACTGTGATAACGTCTGATTCCAGCGGAAACATTAAAAGGAATATTAATGAACCACTGACAAATACGAACACTGGAATACAGTCTTTAGGAGTGCCCAATTCAGAAAGTGGTACTCTAACTAGATCGTCGTCAGTTTCATCGAGACGTTCAACAAACGATACATTACAACTTGTATCTCGTTTATCCTCCTCTATTTTTGTCGGCAATGGTAATGATTCGAAGAAAAGTTCTACAGTAACATCAAGTACTTTTGGAGATGATAATTTAAGTTGGGATACTTCTGTTACTTTGTTATTTGGTGATTTGTTAAAATCAAACCGTCTTCGAAGTTTGACATTCAAAGATGTTCCACTTTCTGCTCTACAAATGCATAAAAAACGATTGGAAAATGAGCGTACAATCATTGATTTATCAAAGTCTATTAAACAAGGTCGAATACCAAATATATTTTCACGTAATCACATTAACACATTATT-CACAGATGAAAATTATCGTAATTT] [+] EMBL CD067640 [GATTATATTGGTATATTTAAAACCTATTCCGACGACTCTGACTCAAACCATTCTTATGAAACCGTTGTGTCAAATGGTAAAATATCGAAAGAGATGGAAGATTGTATTTTAGTTCAAGCAAATAAACCATTGCCAGATTGTCTAGCTGAATTTTATACTCCACCAACAGAGTTAGTTTATAGCAATAAATCTAGTACACGTCCTAGTCTATCATTGGAAAATGCCGTAAGTTGGACAGTACATTGTCGAATTTCTGGAGTCAATCAACTGTGATAACGTCTGATTCCAGCGGAAACATTAAAAGGAATATTAATGAACCACTGACAAATACGAACACTGGAATACAGTCTTTAGGAGTGCCCAATTCAGAAAGTGGTACTCTAACTAGATCGTCGTCAGTTTCATCGAGACGTTCAACAAACGATACATTACAACTTGTATCTCGTTTATCCTCCTCTATTTTTGTCGGCAATGGTAATGATTCGAAGAAAAGTTCTACAGTAACATCAAGTA ] [+] EMBL CD067644 [GATTATATAGGTATATATAAAACCTATTCCGACGACTCTGACTAAAACCATTCTTATGAAACCGTTGTGTCAAATGGTAAAATATCGAACGAGATGGAAGATCGTATTATAATTCAAGCAAATAAACCATTGCCAGATTGTCTAACTGAATTTTATACTCCACCAACAAAGTTAGTTTATAGCAGTAAATCTAGTACACGTGCTAATCTATCATTGGAAAATGCCGTAAGTTGGACAGTACATTGTCGAATTTCTGGAATCAATCAACTGTGATAACGTCTGATTCCAGCGGAAACATTAAAAGGAATATTAATGAACCACTGACAAATACCAACACTGGAATACAGGCTTTACGAGTGC ] [+] EMBL CD118563 [ GTCTATCATTGGAAAATGCC GACAGTACATTGTCGAATTTCTGGAGTCAATCAACTGTGATAACGTCTGATTCCAGCGGAAACATTAAAAGGAATATTAATGAACCACTGACAAATACGAACACTGGAATACAGTCTTTAGGAGTGCCCAATTCAGAAAGTGGTACTCTAACTAGATCGTCGTCAGTTTCATCGAGACGTTCAACACACGATACATTACAACTTGTATCTCGTTTATCCTCCTCTATTTTTGTCGGCAATGGTAATGATTCGAAGAAAAGTTCTACAGTAACATCAAGTACTTTTGGAGATGATAATTTAAGTTGGGATACTTCTGTTACTTTGTTATTTGGTGATTTGTTAAAATCAAACCGTCTTCGAAGTTTGACATTCAAAGATGTTCCACTTTCTGCTCTACAAATGCATAAAAAACGATTGGAAAATGAGCGTACAATCATTGATTTATCAAAGTCTATTAAACAAGGTCGAATACCAAATATATTTTCACGTAATCACATTAACACATTATT CACAGATGAAAATTATCGTAATTT] [+] EMBL CD118574 [ GTCTATCATTGGAAAATGCC GACAATACATTGTCGAATTTCTGGAGTCAATCAACTGTGATAACGTCTGATTCCAGCGGAAACATTAAAAGGAATATTAATGAACCACTGACAAATACGAACACTGGAATACAGTCTTTAGGAGTGCCCAATTCAGAAAGTGGTACTCTAACTAGATCGTCGTCAGTTTCATCGAGACGTTCAACAAACGATACATTACAACTTGTATCTCGTTTATCCTCCTCTATTTTTGTCGGCAATGGTAATGATTCGAAGAAAAGTTCTACAGTAACATCAAGTACTTTTGGAGATGATAATTTAAGTTGGGATACTTCTGTTACTTTGTTATTTGGCGATTTGTTAAAATCAAACCGTCTTCGAAGTTTGACATTCAAAGATGTTCCACTTTCTGCTCTACAAATGCATAAAAAACGATTGGAAAATGAGCGTACAATCATTGATTTATCACAGTCTATTAAACAAGGTCGAATACCAAATATATTTTCACGTCATCAAATTAACACATTATTACA AGATGAAAATTATCGCAATTT] consensusID : consensus_8344#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [TCAAACCATTCTTATGAAACCGTTGTGTCAAATGGTAAAATATCGAAAGAGATGGAAGATTGTATTTTAGTTCAAGCAAATAAACCATTGCCAGATTGTCTAGCTGAATTTTATACTCCACCAACAGAGTTAGTTTATAGCAATAAATCTAGTACACGTCNTAGTCTATCATTGGAAAATGCCGACAGTACATTGTCGAATTTCTGGAGGTAAGTTTAGCGTATATTATCCCATACCATGAAACGAGTTTTGGATATCATGGTTGTTGTCTTTCGTGAATATTTTTCCCGCAGATACAGTTTTTTTTATGTTGTTGCATCGATGGTGATGTCTCGGGTAATATGCAAACGGTTCACCCTTAAAATATACTTCAAGTAAGAACACAAATAAGATCAATTTCGTTCAGTCATTAAAAAGTTTCCACAGAATATTCAAGAATACAA] [-] EMBL CD086643 [TCAAACCATTCTTATGAAACCGTTGTGTCAAATGGTAAAATATCGAAAGAGATGGAAGATTGTATTTTAGTTCAAGCAAATAAACCATTGCCAGATTGTCTAGCTGAATTTTATACTCCACCAACAGAGTTAGTTTATAGCAATAAATCTAGTACACGTCNTAGTCTATCATTGGAAAATGCCGACAGTACATTGTCGAATTTCTGGAGGTAAGTTTAGCGTATATTATCCCATACCATGAAACGAGTTTTGGATATCATGGTTGTTGTCTTTCGTGAATATTTTTCCCGCAGATACAGTTTTTTTTATGTTGTTGCATCGATGGTGATGTCTCGGGTAATATGCAAACGGTTCACCCTTAAAATATACTTCAAGTAAGAACACAAATAAGATCAATTTCGTTCAGTCATTAAAAAGTTTCCACAGAATATTCAAGAATACAA] consensusID : consensus_8344#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence [GTTGATCCTGACGATGTTCTGGTGATATAAATACAGAGATTGATACGGATAGTATAAATAATGATACGATTAGTTTATCGAATGATGCTCAAACTGATGATTATATTGGTATGTTTAAAACCTATTCCGACGACTCTGACTCAAACCATTCTTATGAAACCGTTGTGTCAAATGGTAAAATATCGAAAGAGATGGAAGATTGTATTTTAGTTCAAGCAAATAAACCATTGCCAGATTGTCTAGCTGAATTTTATACTCCACCAACAGAGTTAGTTTATAGCAATAAATCTAGTACACGTCCTAGTCTATCATTGGAAAATGCCGACAGTACATTGTCGAATTTCTGGAGTCAATCAACTGTGATAACGTCTGATTCCAGCGGAAACTGGGAGGGCTAGGATCAA] [+] EMBL CD096988 [GTTGATCCTGACGATGTTCTGGTGATATAAATACAGAGATTGATACGGATAGTATAAATAATGATACGATTAGTTTATCGAATGATGCTCAAACTGATGATTATATTGGTATGTTTAAAACCTATTCCGACGACTCTGACTCAAACCATTCTTATGAAACCGTTGTGTCAAATGGTAAAATATCGAAAGAGATGGAAGATTGTATTTTAGTTCAAGCAAATAAACCATTGCCAGATTGTCTAGCTGAATTTTATACTCCACCAACAGAGTTAGTTTATAGCAATAAATCTAGTACACGTCCTAGTCTATCATTGGAAAATGCCGACAGTACATTGTCGAATTTCTGGAGTCAATCAACTGTGATAACGTCTGATTCCAGCGGAAACTGGGAGGGCTAGGATCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8344#0 ------------------------------------------------------------ consensus_8344#2 GTTGATCCTGACGATGTTCTGGTGATATAAATACAGAGATTGATACGGATAGTATAAATA 60 consensus_8344#1 ------------------------------------------------------------ consensus_8344#0 --------------------------------------GATTATATTGGTATATTTAAAA 22 consensus_8344#2 ATGATACGATTAGTTTATCGAATGATGCTCAAACTGATGATTATATTGGTATGTTTAAAA 120 consensus_8344#1 ------------------------------------------------------------ consensus_8344#0 CCTATTCCGACGACTCTGACTCAAACCATTCTTATGAAACCGTTGTGTCAAATGGTAAAA 82 consensus_8344#2 CCTATTCCGACGACTCTGACTCAAACCATTCTTATGAAACCGTTGTGTCAAATGGTAAAA 180 consensus_8344#1 --------------------TCAAACCATTCTTATGAAACCGTTGTGTCAAATGGTAAAA 40 **************************************** consensus_8344#0 TATCGAAAGAGATGGAAGATTGTATTTTAGTTCAAGCAAATAAACCATTGCCAGATTGTC 142 consensus_8344#2 TATCGAAAGAGATGGAAGATTGTATTTTAGTTCAAGCAAATAAACCATTGCCAGATTGTC 240 consensus_8344#1 TATCGAAAGAGATGGAAGATTGTATTTTAGTTCAAGCAAATAAACCATTGCCAGATTGTC 100 ************************************************************ consensus_8344#0 TAGCTGAATTTTATACTCCACCAACAGAGTTAGTTTATAGCAATAAATCTAGTACACGTC 202 consensus_8344#2 TAGCTGAATTTTATACTCCACCAACAGAGTTAGTTTATAGCAATAAATCTAGTACACGTC 300 consensus_8344#1 TAGCTGAATTTTATACTCCACCAACAGAGTTAGTTTATAGCAATAAATCTAGTACACGTC 160 ************************************************************ consensus_8344#0 CTAGTCTATCATTGGAAAATGCCGTAAGTTGGACAGTACATTGTCGAATTTCTGGAGTCA 262 consensus_8344#2 CTAGTCTATCATTGGAAAATGCCG--------ACAGTACATTGTCGAATTTCTGGAGTCA 352 consensus_8344#1 NTAGTCTATCATTGGAAAATGCCG--------ACAGTACATTGTCGAATTTCTGGAGGTA 212 *********************** ************************* * consensus_8344#0 A-TCAACTGTGATAACGTCTGATTCCAGCGGA--AACATTAAAAGGAATATTAATGAACC 319 consensus_8344#2 A-TCAACTGTGATAACGTCTGATTCCAGCGGA--AAC--TGGGAGGGCTAGGATCAA--- 404 consensus_8344#1 AGTTTAGCGT-ATATTATCCCATACCATGAAACGAGTTTTGGATATCATGGTTGTTGTCT 271 * * * ** *** ** ** *** * * * * consensus_8344#0 ACTGACAAATACGAACACTGGAATACAGTCTTTAGGAGTGCCCAATTCAGAAAGTGGTAC 379 consensus_8344#2 ------------------------------------------------------------ consensus_8344#1 TTCGTGAATATTTTTCCCGCAGATACAGTTTTTTTTATGTTGTTGCATCGATGGTGATGT 331 consensus_8344#0 TCTAACTAGATCGTCGTCAGTTTCATCGAGACGTTCAACAAACGATACATTACAACTTGT 439 consensus_8344#2 ------------------------------------------------------------ consensus_8344#1 CTCGGGTAATATGCAAACGGTTCACCCTTAAAATATACTTCAAGTAAGAACACAAATAAG 391 consensus_8344#0 ATCTCGTTTATCCTCCTCTATTTTTGTCGGCAATGGTAATGATTCGAAGAAAAGTTCTAC 499 consensus_8344#2 ------------------------------------------------------------ consensus_8344#1 ATCAATTTCGTTCAGTCATTAAAAAGTTTCCACAGAATATTCAAGAATACAA-------- 443 consensus_8344#0 AGTAACATCAAGTACTTTTGGAGATGATAATTTAAGTTGGGATACTTCTGTTACTTTGTT 559 consensus_8344#2 ------------------------------------------------------------ consensus_8344#1 ------------------------------------------------------------ consensus_8344#0 ATTTGGTGATTTGTTAAAATCAAACCGTCTTCGAAGTTTGACATTCAAAGATGTTCCACT 619 consensus_8344#2 ------------------------------------------------------------ consensus_8344#1 ------------------------------------------------------------ consensus_8344#0 TTCTGCTCTACAAATGCATAAAAAACGATTGGAAAATGAGCGTACAATCATTGATTTATC 679 consensus_8344#2 ------------------------------------------------------------ consensus_8344#1 ------------------------------------------------------------ consensus_8344#0 AAAGTCTATTAAACAAGGTCGAATACCAAATATATTTTCACGTAATCACATTAACACATT 739 consensus_8344#2 ------------------------------------------------------------ consensus_8344#1 ------------------------------------------------------------ consensus_8344#0 ATTCACAGATGAAAATTATCGTAATTT 766 consensus_8344#2 --------------------------- consensus_8344#1 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||