These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8347#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1030 fasta sequence [TCGAGCCAANAATTCGGCACGAGGGTTTTGTTTTGGGGGGACCGGGTGCTGGGAAAGGTACAGTATGCCAGCAAATTGTGCAGGAATATGGATTTGTACACTTATCTGCTGGTGAATTACTTCGACAAGCTCGTGATTCATCAGATTCTGAATTCGCTAGTGAAATACAAGAACACATGAAAAATGGGACAATCGTACCGGCTAAAATTACTTGTGGTTTATTATATCAAGCAATGAAAAAACATTCTGAAAATGCTAATTGTACAAATTTTCTTGTGGATGGTTTTCCACGTAATGATGATAATCGTTTGTGTTGGGAAAAAGATTTAGGCCCTCATACAATATTAAAGAAGGTTATTGTTTTAGACTGTCCAGATGATGTATGTATCCAGCGTTGCCTTGGACGAAAGTCGAATCGAGTGGACGACAATGAAGAAACATTAAAGCATCGCATAAAACAATTCAAAGAAGAATGTATGCCGATTATTAAATTCTATGAGGCACAAAATTTGGTGACCAGAATTAATGCAAATAAGTCTATACCTGAGGTATATGAACAGGTTCGACAAATGATGAAAACATTGAATATCGTCAGTTGCAAATGAAGAAACAAAAATCTCCTAATTCANATTTCGTATTTGTATTTTACAAATTAACACTAATTGTATTTTTTTTTTATGACAACTGTGTTGCATAATGATCATTATTTTATAGTTGATTTGATGTAAACAAACCCAACGGATATTATTTTTTTTTTATCATTGGCTTTTAAAGTTGTAAAAGGCAAGATTTTTTTCATTGGGAAGAAAAATTTATTTCAGCAGTAGAACTGTACGAAAATGAAGTAGTAATATGGAATTAACCCTATTCATTTCATATTTTTATTTGAATACAAAAAAAGGGTTCAACTATGATTATACCTTGTCAACTATTATTTGTTTTACAGAAAAAGATGTGATTTCCTTGTCTTTATATTTTTTGATAATCAAGTATAACATGTAATAGTAATAATAATAATAAAATATATTGC] [+] EMBL CD082709 [TCGAGCCAANAATTCGGCACGAGGGTTTTGTTTTGGGGGGACCGGGTGCTGGGAAAGGTACAGTATGCCAGCAAATTGTGCAGGAATATGGATTTGTACACTTATCTGCTGGTGAATTACTTCGACAAGCTCGTGATTCATCAGATTCTGAATTCGCTAGTGAAATACAAGAACACATGAAAAATGGGACAATCGTACCGGCTAAAATTACTTGTGGTTTATTATATCAAGCAATGAAAAAACATTCTGAAAATGCTAATTGTACAAATTTTCTTGTGGATGGTTTTCCACGTAATGATGATAATCGTTTGTGTTGGGAAAAAGATTTAGGCCCTCATACAATATTAAAGAAGGTTATTGTTTTAGACTGTCCAGATGATGTATGTATCCAGCGTTGCCTTGGACGAAAGTCGAATCGAGTGGACGACAATGAAGAAACATTAAAGCATCGCATAAAACAATTCAAAGAAGAATGTATGCCGATTATTAAATTCTATGAGGCACAAAATTTGGTGACCAGAATTAATGCAAATAAGTCTATACCTGAGGTATATGAACAGGTTCGACAAATGATGAAAACATTGAATATCGTCAGTTGCAAATGAAGAAACAAAAATCTCCTAATTCANATTTCGTATTTGTATTTTACAAATTAACAC ] [+] EMBL CD118157 [ GTGCCGGGAAAGGTACAGTATGCCAGCAAATTGTGCAGGAATATGGATCTGTACACTTATCTGCTGGTGAATTACTTCGACAAGCTCGTGATTCATCAGATTCTGAATTCGCTAGTGAAATACAAGAACACATGAAAAATGGGACAATCGTACCGGCTAAAATTACTTGTGGTTTATTATATCAAGCAATGAAAAAACATTCTGAAAATGCTAATTGTACAAATTTTCTTGTGGATGGTTTTCCACGTAATGATGATAATCGTTTGTGTTGGGAAAAAGATTTAGGCCCTCATACAATATTAAAGAAGGTTATTGTTTTAGACTGTCCAGATGATGTATGTATCCAGCGTTGCCTTGGACGAA ] [+] EMBL CD118033 [ tTGCTGGGAAAGGTACACCTTGCCTGCAAATTGTGCAGGAATATGGATTCGTACACTTATCTGCTGGTGAATCACTTCGACAAGCTCGTGAGTCATCAGATTCTGAATTCGCTAGTGAAATACGAGAACACATGAAAAATGGGACAATGGTACCGGCTAAAATTACTTGCGGGTTATTATATCAAGCAATGAAAAAACATTCTGAAAATGCTAATTGTACAAATTTTCTTGTGGATGGCTTTCCACGTAATGATGATAATCGCTTGAGATGGGAAAAAGATTTATGCCCTCATACAATATTAAAGAACGTTATTGTTTTAGACTGTCCAGATGATGTATGTATCCACCGTTGCCTTGGACGAA ] [-] EMBL CD164352 [ AATTGTACAAATTTTCTTGTGGATGGTTTTCCACGTAATGATGATAATCGTTTGTGTTGGGAAAAAGATTTAGGCCCTCATACAATATTAAAGAAGGTTATTGTTTTAGACTGTCCAGATGATGTATGTATCCAGCGTTGCCTTGGACGAAAGTCGAATCGAGTGGACGACAATGAAGAAACATTAAAGCATCGCATAAAAC ATTCAAAGAAGAATGTATGCCGATTATTAAATTCTATGAGGC ] [-] EMBL CD076299 [ ATCGTCAGTTGCAAATGAAGAACAAAAAATCTCCTAATTCAAATTTTGTATTTGTATTTTACAAATTAACACTAATTGTATTTTTTTTTTATGACAACTGTGTTGCATAATGATCATTATTTTATAGTTGATTTGATGTAAACAAACCCAACGGATATTATTTTTTTTTTATCATTGGCTTTTAAAGTTGTAAAAGGCAAGATTTTTTTCATTGGGAAGAAAAATTTATTTCAGCAGTAGAACTGTACGAAAATGAAGTAGTAATATGGAATTAACCCTATTCATTTCATATTTTTATTTGAATACAAAAAAAGGGTTCAACTATGATTATACCTTGTCAACTATTATTTGTTTTACAGAAAAAGATGTGATTTCCTTGTCTTTATATTTTTTGATAATCAAGTATAACATGTAATAGTAATAATAATAATAAAATATATTGC] consensusID : consensus_8347#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence [CTTAGTTGGGAAAGTAACAAAAGAGAAGTAGTATGAATATGTATAAACTTATGCAACATGTTAAATCCAAATATCAATGTCCTTAACGATCAGATAATCTTAAAAAAATCATCTGGTCACTCTGAGTTGCAAGATCACTTTTCATTAAACCAAACACCATTATTTGGCGGGATATGAAGTTCAACACTTGTTTTGATTTGGGGGGACCGGGTGCTGGGAAAGGACCAGTATGCCAGCAAAGTGCGCAAGAATATGGATTTGTACACTAATCTGCTGGTGAATTACTTCG] [+] EMBL CD138005 [CTTAGTTGGGAAAGTAACAAAAGAGAAGTAGTATGAATATGTATAAACTTATGCAACATGTTAAATCCAAATATCAATGTCCTTAACGATCAGATAATCTTAAAAAAATCATCTGGTCACTCTGAGTTGCAAGATCACTTTTCATTAAACCAAACACCATTATTTGGCGGGATATGAAGTTCAACACTTGTTTTGATTTGGGGGGACCGGGTGCTGGGAAAGGACCAGTATGCCAGCAAAGTGCGCAAGAATATGGATTTGTACACTAATCTGCTGGTGAATTACTTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8347#0 TCGAGCCAANAATTCGGCACGAGGGTTTTGTTTTGGGGGGACCGGGTGCTGGGAAAGGTA 60 consensus_8347#1 ------------------------------------------------------------ consensus_8347#0 CAGTATGCCAGCAAATTGTGCAGGAATATGGATTTGTACACTTATCTGCTGGTGAATTAC 120 consensus_8347#1 ------------------------------------------------------------ consensus_8347#0 TTCGACAAGCTCGTGATTCATCAGATTCTGAATTCGCTAGTGAAATACAAGAACACATGA 180 consensus_8347#1 ------------------------------------------------------------ consensus_8347#0 AAAATGGGACAATCGTACCGGCTAAAATTACTTGTGGTTTATTATATCAAGCAATGAAAA 240 consensus_8347#1 ------------------------------------------------------------ consensus_8347#0 AACATTCTGAAAATGCTAATTGTACAAATTTTCTTGTGGATGGTTTTCCACGTAATGATG 300 consensus_8347#1 ------------------------------------------------------------ consensus_8347#0 ATAATCGTTTGTGTTGGGAAAAAGATTTAGGCCCTCATACAATATTAAAGAAGGTTATTG 360 consensus_8347#1 ------------------------------------------------------------ consensus_8347#0 TTTTAGACTGTCCAGATGATGTATGTATCCAGCGTTGCCTTGGACGAAAGTCGAATCGAG 420 consensus_8347#1 ------------------------------------------------------------ consensus_8347#0 TGGACGACAATGAAGAAACATTAAAGCATCGCATAAAACAATTCAAAGAAGAATGTATGC 480 consensus_8347#1 ------------------------------------------------------------ consensus_8347#0 CGATTATTAAATTCTATGAGGCACAAAATTTGGTGACCAGAATTAATGCAAATAAGTCTA 540 consensus_8347#1 ------------------------------------------------------------ consensus_8347#0 TACCTGAGGTATATGAACAGGTTCGACAAATGATGAAAACATTGAATATCGTCAGTTGCA 600 consensus_8347#1 --------------------------------------------------CTTAGTTGGG 10 * ***** consensus_8347#0 AATGAAGAAACAAAAATCTCCTAATTCANATTT-CGTATTTGTATTTTACAAATTAACAC 659 consensus_8347#1 AA---AGTAACAAAAGAGAAGTAGTATGAATATGTATAAACTTATGCAACATGTTAAATC 67 ** ** ******* ** * ** * ** *** *** **** * consensus_8347#0 TAATTGTATTTTTTTTTTATGACAACTGTGTTGCATAATGATCATTATTTTATAGTTGAT 719 consensus_8347#1 CAAATATCAATGTCCTTAACGATCAGATAATCTTAAAAAAATCATC------TGGTCACT 121 ** * * * * ** * ** * * * ** ***** * ** * consensus_8347#0 TTGATGTAAACAAACCCAACGGATATTATTTTTTTTTTATCATTGGCTTTTAAAGTTGTA 779 consensus_8347#1 CTGAGTT--GCAAGATCACTTTTCATTAAACCAAA--CACCATTA-TTTGGCGGGATATG 176 *** * *** ** **** * **** ** * * * consensus_8347#0 AAAGGCAAGATTT-TTTTCATTGGGAAGAAAAATTTATTTCAGCAGTAGAACTGTACGA- 837 consensus_8347#1 AAGTTCAACACTTGTTTTGATTTGGGGGGACCGGGTGCTGGGAAAGGACCAGTATGCCAG 236 ** *** * ** **** *** ** * * * * ** * * * * * * consensus_8347#0 -AAATGAAGTAGTAATATGGAATTA-ACCCTATTCATTTCATATTTTTATTTGAATACAA 895 consensus_8347#1 CAAAGTGCGCAAGAATATGGATTTGTACACTAATCTGCTGGTGAATTACTTCG------- 289 *** * * ******** ** ** *** ** * * ** ** * consensus_8347#0 AAAAAGGGTTCAACTATGATTATACCTTGTCAACTATTATTTGTTTTACAGAAAAAGATG 955 consensus_8347#1 ------------------------------------------------------------ consensus_8347#0 TGATTTCCTTGTCTTTATATTTTTTGATAATCAAGTATAACATGTAATAGTAATAATAAT 1015 consensus_8347#1 ------------------------------------------------------------ consensus_8347#0 AATAAAATATATTGC 1030 consensus_8347#1 --------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||