These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8360#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 803 fasta sequence [TAAATTATACAATACAATTAAACAAAAGAAAAAGCCAAGAAATGAATAGTTATAGTATACAAGCAAGATAAGTGACCTTGATCATTAACCAAACAAAAAAAAGGATTAGGAGAATTTAAATTTTCAAGTTAAATCTAAGAATTTTTACGACTTCTTCGATTGTAACCATTATTTTCAGATTTGGAATCATGTCGTACAACGGATTCTTTAGCTAGTGTTGTCCTAGAATTACCACCACCAGTTGTAGTAGACCAACTGTCATTGTCAATTGATCCCCATCCATGATCATTGCTTAAATCCCAATCACAGGTTTCATTATTATTCCAGTTAGTATTCGACAATGAAGCGCCTTTTCCTTCACTTGTATTAAACGAATCGGTTCCATGTTGTAGGTGTCGATCAAGAAACATTGAACTGGAACGATCTTGTTCACGATTACTGTAGAGAGTAGACCCATATGATTTGTCAGAATTTCCGTTAGACAAATCTGATTCAGGATTACTAGTCCAATATGATTCAAAACTTCGAATTCCTTGCATTTTCACTGTTTGCAACTTTGAGGTGACAGTATCAACACCTTTTGATAATGAATCCAAAATATTGCTATCTTTAACTTTTTCTTGAACGGATTGAGTTAATTCTTTGGTTTTTTGTGTTGCTTGAGATGCTAATTGACTGGTACATTTAGCAGCTACTGAAGCCACTTGACTAACCATTGCCCAACCTGACTGCCATGAGTATTTGTCATTTCTTTCAGGTACTAATGAATAATGCCTAGACGAAGAATTTGCATATTTACCATT] [+] EMBL CD159965 [TAAATTATACAATACAATTAAACAAAAGAAAAAGCCAAGAAATGAATAGTTATAGTATACAAGCAAGATAAGTGACCTTGATCATTAACCAAACAAAAAAAAGGATTAGGAGAATTTAAATTTTCAAGTTAAATCTAAGAATTTTTACGACTTCTTCGATTGTAACCATTATTTTCAGATTTGGAATCATGTCGTACAACG ] [-] EMBL CD062770 [ GTATACAAGCGAGATAAGTGACCTTGATCATTAGCCACACAAAGATAAGGATTAGGAGAATTTAAATCTTCAAGTTAAATCTAAGAATTTTTACGACTTCTTCGATTGTAACCATTATTTTCATATTTGGAATCATGTCGTACAACGGATTCTTTAGCTAGTGTTGTCCTAGAATTACCGCCACCAGTTGTAGTAGACCAACTGTCATTGTCAATTGATCCCCATCCATGATCATTGCTTAGATCCCAATCACAGGTTTCATTATTATTCCAGTTAGTATTCGACAATGAAGCGCCTTTTCCTTCACTTGTATTAAGCGAATCGGTTCCATGTTGTAGGTGTCGATCAATATACATTGAACTGGAACGATCTTGTTCGCGATTACTGTAGAGAGTAGACCCATATGATTTGTCAGAATTTCCGTTAGACAAATGTGATTCAGGATTACTAGTTCAATAGTATTGAAAGCTTCG ] [-] EMBL AI390073 [ ACCAAAAAAAGGATTGGGGGAATTTAAATTTTCAAGTGAAATCTAAGAAGTTTTACGACTTCTTCGATTGTAACCATTATTTTCAGATTTGGAATCATGTCGCACAACGGATTCTTTAGCTAGTGTTGTCCTAGAATTACCACCACCAGTTGTAGTAGACCAACTGTCATTGTCAATTGATCCCCATCCATGATCATTGCTTAAATCCCAATCA ] [+] EMBL CD096755 [ ACCACCAGTTGTAGTAGACCAACTGTCATTGTCAATTGATCCCCATCCATGATCATTGCTTAAATCCCAATCACAGGTTTCATTATTATTCCAGTTAGTATTCGACAATGAAGCGCCTTTTCCTTCACTTGTATTAAACGAATCGGTTCCATGTTGTAGGTGTCGATCAAGAAACATTGAACTGGAACGATCTTGTTCACGATTACTGTAGAGAGTAGACCCATATGATTTGTCAGAATTTCCGTTAGACAAATCTGATTCAGGATTACTAGTCCAATATGATTCAAAACTTCGAATTCCTTGCATTTTCACTGTTTGCAACTTTGAGGTGACAGTATCAACACCTTTTGATAATGAATCCAAAATATTGCTATCTTTAACTTTTTCTTGAACGGATTGAGTTAATTCTTTGGTTTTTTGTGTTGCTTGAGATGCTAATTGACTGGTACATTTAGCAGCTACTGAAGCCACTTGACTAACCATTGCCCAACCTGACTGCCATGAGTATTTGTCATTTCTTTCAGGTACTAATGAATAATGCCTAGACGAAGAATTTGCATATTTACCATT] [+] EMBL CD096762 [ ACCACCAGTTGTAGTAGACCAACTGTCATTGTCAATTGATCCCCATCCATGATCATTGCTTAAATCCCAATCACAGGTTTCATTATTATTCCAGTTAGTATTCGACAATGAAGCGCCTTTTCCTTCACTTGTATTAAACGAATCGGTTCCATGTTGTAGGTGTCGATCAAGAAACATTGAACTGGAACGATCTTGTTCACGATTACTGTAGAGAGTAGACCCATATGATTTGTCAGAATTTCCGTTAGACAAATCTGATTCAGGATTACTAGTCCAATATGATTCAAAACTTCGAATTCCTTGCATTTTCACTGTTTGCAACTTTGAGGTGACAGTATCAACACCTTTTGATAATGAATCCAAAATATTGCTATCTTTAACTTTTTCTTGAACGGATTGAGTTAATTCTTTGGTTTTTTGTGTTGCTTGAGATGCTAATTGACTGGTACATTTAGCAGCTACTGAAGCCACTTGACTAACCATTGCCCAACCTGACTGCCATGAGTATTTGTCATTTCTTTCAGGTACTAATGAATAATGCCTAGACGAAGAATTTGCATATTTACCATT] consensusID : consensus_8360#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 227 fasta sequence [ATTACTGTAGAGAGTAGACCCATATGATTTGTCAGAATTTCCGTTAGACANATCTGATTCAGGATTACTAGTCCAATATGATTCAAAACTTCGAATTCCTTGCATTTTCACTGTTTGCAACTTTGAGGTGACAGTATCAACACCTTTTGATAATGAATCCAAAATATTGCTATCTTTAACTTTTTCTTGAACGGATTGAGTTAATTCCTCGTGCCGAATCTTGGCCC] [-] EMBL CD078056 [ATTACTGTAGAGAGTAGACCCATATGATTTGTCAGAATTTCCGTTAGACANATCTGATTCAGGATTACTAGTCCAATATGATTCAAAACTTCGAATTCCTTGCATTTTCACTGTTTGCAACTTTGAGGTGACAGTATCAACACCTTTTGATAATGAATCCAAAATATTGCTATCTTTAACTTTTTCTTGAACGGATTGAGTTAATTCCTCGTGCCGAATCTTGGCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8360#0 TAAATTATACAATACAATTAAACAAAAGAAAAAGCCAAGAAATGAATAGTTATAGTATAC 60 consensus_8360#1 ------------------------------------------------------------ consensus_8360#0 AAGCAAGATAAGTGACCTTGATCATTAACCAAACAAAAAAAAGGATTAGGAGAATTTAAA 120 consensus_8360#1 ------------------------------------------------------------ consensus_8360#0 TTTTCAAGTTAAATCTAAGAATTTTTACGACTTCTTCGATTGTAACCATTATTTTCAGAT 180 consensus_8360#1 ------------------------------------------------------------ consensus_8360#0 TTGGAATCATGTCGTACAACGGATTCTTTAGCTAGTGTTGTCCTAGAATTACCACCACCA 240 consensus_8360#1 ------------------------------------------------------------ consensus_8360#0 GTTGTAGTAGACCAACTGTCATTGTCAATTGATCCCCATCCATGATCATTGCTTAAATCC 300 consensus_8360#1 ------------------------------------------------------------ consensus_8360#0 CAATCACAGGTTTCATTATTATTCCAGTTAGTATTCGACAATGAAGCGCCTTTTCCTTCA 360 consensus_8360#1 ------------------------------------------------------------ consensus_8360#0 CTTGTATTAAACGAATCGGTTCCATGTTGTAGGTGTCGATCAAGAAACATTGAACTGGAA 420 consensus_8360#1 ------------------------------------------------------------ consensus_8360#0 CGATCTTGTTCACGATTACTGTAGAGAGTAGACCCATATGATTTGTCAGAATTTCCGTTA 480 consensus_8360#1 --------------ATTACTGTAGAGAGTAGACCCATATGATTTGTCAGAATTTCCGTTA 46 ********************************************** consensus_8360#0 GACAAATCTGATTCAGGATTACTAGTCCAATATGATTCAAAACTTCGAATTCCTTGCATT 540 consensus_8360#1 GACANATCTGATTCAGGATTACTAGTCCAATATGATTCAAAACTTCGAATTCCTTGCATT 106 **** ******************************************************* consensus_8360#0 TTCACTGTTTGCAACTTTGAGGTGACAGTATCAACACCTTTTGATAATGAATCCAAAATA 600 consensus_8360#1 TTCACTGTTTGCAACTTTGAGGTGACAGTATCAACACCTTTTGATAATGAATCCAAAATA 166 ************************************************************ consensus_8360#0 TTGCTATCTTTAACTTTTTCTTGAACGGATTGAGTTAATTCTTTGGTTTTTTGTGTTGCT 660 consensus_8360#1 TTGCTATCTTTAACTTTTTCTTGAACGGATTGAGTTAATTCCTCG-TGCCGAATCTTGGC 225 ***************************************** * * * * *** consensus_8360#0 TGAGATGCTAATTGACTGGTACATTTAGCAGCTACTGAAGCCACTTGACTAACCATTGCC 720 consensus_8360#1 CC---------------------------------------------------------- 227 consensus_8360#0 CAACCTGACTGCCATGAGTATTTGTCATTTCTTTCAGGTACTAATGAATAATGCCTAGAC 780 consensus_8360#1 ------------------------------------------------------------ consensus_8360#0 GAAGAATTTGCATATTTACCATT 803 consensus_8360#1 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||