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Schistosoma mansoni
cluster # 8360 cluster # 8360       Sequences # 6       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8360#0 length = 803 sequences # 5  
 consensus_8360#1 length = 227 sequences # 1  
consensusID : consensus_8360#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 803
fasta sequence 
                              [TAAATTATACAATACAATTAAACAAAAGAAAAAGCCAAGAAATGAATAGTTATAGTATACAAGCAAGATAAGTGACCTTGATCATTAACCAAACAAAAAAAAGGATTAGGAGAATTTAAATTTTCAAGTTAAATCTAAGAATTTTTACGACTTCTTCGATTGTAACCATTATTTTCAGATTTGGAATCATGTCGTACAACGGATTCTTTAGCTAGTGTTGTCCTAGAATTACCACCACCAGTTGTAGTAGACCAACTGTCATTGTCAATTGATCCCCATCCATGATCATTGCTTAAATCCCAATCACAGGTTTCATTATTATTCCAGTTAGTATTCGACAATGAAGCGCCTTTTCCTTCACTTGTATTAAACGAATCGGTTCCATGTTGTAGGTGTCGATCAAGAAACATTGAACTGGAACGATCTTGTTCACGATTACTGTAGAGAGTAGACCCATATGATTTGTCAGAATTTCCGTTAGACAAATCTGATTCAGGATTACTAGTCCAATATGATTCAAAACTTCGAATTCCTTGCATTTTCACTGTTTGCAACTTTGAGGTGACAGTATCAACACCTTTTGATAATGAATCCAAAATATTGCTATCTTTAACTTTTTCTTGAACGGATTGAGTTAATTCTTTGGTTTTTTGTGTTGCTTGAGATGCTAATTGACTGGTACATTTAGCAGCTACTGAAGCCACTTGACTAACCATTGCCCAACCTGACTGCCATGAGTATTTGTCATTTCTTTCAGGTACTAATGAATAATGCCTAGACGAAGAATTTGCATATTTACCATT]

[+] EMBL CD159965             [TAAATTATACAATACAATTAAACAAAAGAAAAAGCCAAGAAATGAATAGTTATAGTATACAAGCAAGATAAGTGACCTTGATCATTAACCAAACAAAAAAAAGGATTAGGAGAATTTAAATTTTCAAGTTAAATCTAAGAATTTTTACGACTTCTTCGATTGTAACCATTATTTTCAGATTTGGAATCATGTCGTACAACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD062770             [                                                      GTATACAAGCGAGATAAGTGACCTTGATCATTAGCCACACAAAGATAAGGATTAGGAGAATTTAAATCTTCAAGTTAAATCTAAGAATTTTTACGACTTCTTCGATTGTAACCATTATTTTCATATTTGGAATCATGTCGTACAACGGATTCTTTAGCTAGTGTTGTCCTAGAATTACCGCCACCAGTTGTAGTAGACCAACTGTCATTGTCAATTGATCCCCATCCATGATCATTGCTTAGATCCCAATCACAGGTTTCATTATTATTCCAGTTAGTATTCGACAATGAAGCGCCTTTTCCTTCACTTGTATTAAGCGAATCGGTTCCATGTTGTAGGTGTCGATCAATATACATTGAACTGGAACGATCTTGTTCGCGATTACTGTAGAGAGTAGACCCATATGATTTGTCAGAATTTCCGTTAGACAAATGTGATTCAGGATTACTAGTTCAATAGTATTGAAAGCTTCG                                                                                                                                                                                                                                                                                    ]
[-] EMBL AI390073             [                                                                                            ACCAAAAAAAGGATTGGGGGAATTTAAATTTTCAAGTGAAATCTAAGAAGTTTTACGACTTCTTCGATTGTAACCATTATTTTCAGATTTGGAATCATGTCGCACAACGGATTCTTTAGCTAGTGTTGTCCTAGAATTACCACCACCAGTTGTAGTAGACCAACTGTCATTGTCAATTGATCCCCATCCATGATCATTGCTTAAATCCCAATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD096755             [                                                                                                                                                                                                                                         ACCACCAGTTGTAGTAGACCAACTGTCATTGTCAATTGATCCCCATCCATGATCATTGCTTAAATCCCAATCACAGGTTTCATTATTATTCCAGTTAGTATTCGACAATGAAGCGCCTTTTCCTTCACTTGTATTAAACGAATCGGTTCCATGTTGTAGGTGTCGATCAAGAAACATTGAACTGGAACGATCTTGTTCACGATTACTGTAGAGAGTAGACCCATATGATTTGTCAGAATTTCCGTTAGACAAATCTGATTCAGGATTACTAGTCCAATATGATTCAAAACTTCGAATTCCTTGCATTTTCACTGTTTGCAACTTTGAGGTGACAGTATCAACACCTTTTGATAATGAATCCAAAATATTGCTATCTTTAACTTTTTCTTGAACGGATTGAGTTAATTCTTTGGTTTTTTGTGTTGCTTGAGATGCTAATTGACTGGTACATTTAGCAGCTACTGAAGCCACTTGACTAACCATTGCCCAACCTGACTGCCATGAGTATTTGTCATTTCTTTCAGGTACTAATGAATAATGCCTAGACGAAGAATTTGCATATTTACCATT]
[+] EMBL CD096762             [                                                                                                                                                                                                                                         ACCACCAGTTGTAGTAGACCAACTGTCATTGTCAATTGATCCCCATCCATGATCATTGCTTAAATCCCAATCACAGGTTTCATTATTATTCCAGTTAGTATTCGACAATGAAGCGCCTTTTCCTTCACTTGTATTAAACGAATCGGTTCCATGTTGTAGGTGTCGATCAAGAAACATTGAACTGGAACGATCTTGTTCACGATTACTGTAGAGAGTAGACCCATATGATTTGTCAGAATTTCCGTTAGACAAATCTGATTCAGGATTACTAGTCCAATATGATTCAAAACTTCGAATTCCTTGCATTTTCACTGTTTGCAACTTTGAGGTGACAGTATCAACACCTTTTGATAATGAATCCAAAATATTGCTATCTTTAACTTTTTCTTGAACGGATTGAGTTAATTCTTTGGTTTTTTGTGTTGCTTGAGATGCTAATTGACTGGTACATTTAGCAGCTACTGAAGCCACTTGACTAACCATTGCCCAACCTGACTGCCATGAGTATTTGTCATTTCTTTCAGGTACTAATGAATAATGCCTAGACGAAGAATTTGCATATTTACCATT]




>consensus_8360#0
TAAATTATACAATACAATTAAACAAAAGAAAAAGCCAAGAAATGAATAGTTATAGTATAC
AAGCAAGATAAGTGACCTTGATCATTAACCAAACAAAAAAAAGGATTAGGAGAATTTAAA
TTTTCAAGTTAAATCTAAGAATTTTTACGACTTCTTCGATTGTAACCATTATTTTCAGAT
TTGGAATCATGTCGTACAACGGATTCTTTAGCTAGTGTTGTCCTAGAATTACCACCACCA
GTTGTAGTAGACCAACTGTCATTGTCAATTGATCCCCATCCATGATCATTGCTTAAATCC
CAATCACAGGTTTCATTATTATTCCAGTTAGTATTCGACAATGAAGCGCCTTTTCCTTCA
CTTGTATTAAACGAATCGGTTCCATGTTGTAGGTGTCGATCAAGAAACATTGAACTGGAA
CGATCTTGTTCACGATTACTGTAGAGAGTAGACCCATATGATTTGTCAGAATTTCCGTTA
GACAAATCTGATTCAGGATTACTAGTCCAATATGATTCAAAACTTCGAATTCCTTGCATT
TTCACTGTTTGCAACTTTGAGGTGACAGTATCAACACCTTTTGATAATGAATCCAAAATA
TTGCTATCTTTAACTTTTTCTTGAACGGATTGAGTTAATTCTTTGGTTTTTTGTGTTGCT
TGAGATGCTAATTGACTGGTACATTTAGCAGCTACTGAAGCCACTTGACTAACCATTGCC
CAACCTGACTGCCATGAGTATTTGTCATTTCTTTCAGGTACTAATGAATAATGCCTAGAC
GAAGAATTTGCATATTTACCATT

consensusID : consensus_8360#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 227
fasta sequence 
                              [ATTACTGTAGAGAGTAGACCCATATGATTTGTCAGAATTTCCGTTAGACANATCTGATTCAGGATTACTAGTCCAATATGATTCAAAACTTCGAATTCCTTGCATTTTCACTGTTTGCAACTTTGAGGTGACAGTATCAACACCTTTTGATAATGAATCCAAAATATTGCTATCTTTAACTTTTTCTTGAACGGATTGAGTTAATTCCTCGTGCCGAATCTTGGCCC]

[-] EMBL CD078056             [ATTACTGTAGAGAGTAGACCCATATGATTTGTCAGAATTTCCGTTAGACANATCTGATTCAGGATTACTAGTCCAATATGATTCAAAACTTCGAATTCCTTGCATTTTCACTGTTTGCAACTTTGAGGTGACAGTATCAACACCTTTTGATAATGAATCCAAAATATTGCTATCTTTAACTTTTTCTTGAACGGATTGAGTTAATTCCTCGTGCCGAATCTTGGCCC]




>consensus_8360#1
ATTACTGTAGAGAGTAGACCCATATGATTTGTCAGAATTTCCGTTAGACANATCTGATTC
AGGATTACTAGTCCAATATGATTCAAAACTTCGAATTCCTTGCATTTTCACTGTTTGCAA
CTTTGAGGTGACAGTATCAACACCTTTTGATAATGAATCCAAAATATTGCTATCTTTAAC
TTTTTCTTGAACGGATTGAGTTAATTCCTCGTGCCGAATCTTGGCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8360#0      TAAATTATACAATACAATTAAACAAAAGAAAAAGCCAAGAAATGAATAGTTATAGTATAC 60
consensus_8360#1      ------------------------------------------------------------
                                                                                  

consensus_8360#0      AAGCAAGATAAGTGACCTTGATCATTAACCAAACAAAAAAAAGGATTAGGAGAATTTAAA 120
consensus_8360#1      ------------------------------------------------------------
                                                                                  

consensus_8360#0      TTTTCAAGTTAAATCTAAGAATTTTTACGACTTCTTCGATTGTAACCATTATTTTCAGAT 180
consensus_8360#1      ------------------------------------------------------------
                                                                                  

consensus_8360#0      TTGGAATCATGTCGTACAACGGATTCTTTAGCTAGTGTTGTCCTAGAATTACCACCACCA 240
consensus_8360#1      ------------------------------------------------------------
                                                                                  

consensus_8360#0      GTTGTAGTAGACCAACTGTCATTGTCAATTGATCCCCATCCATGATCATTGCTTAAATCC 300
consensus_8360#1      ------------------------------------------------------------
                                                                                  

consensus_8360#0      CAATCACAGGTTTCATTATTATTCCAGTTAGTATTCGACAATGAAGCGCCTTTTCCTTCA 360
consensus_8360#1      ------------------------------------------------------------
                                                                                  

consensus_8360#0      CTTGTATTAAACGAATCGGTTCCATGTTGTAGGTGTCGATCAAGAAACATTGAACTGGAA 420
consensus_8360#1      ------------------------------------------------------------
                                                                                  

consensus_8360#0      CGATCTTGTTCACGATTACTGTAGAGAGTAGACCCATATGATTTGTCAGAATTTCCGTTA 480
consensus_8360#1      --------------ATTACTGTAGAGAGTAGACCCATATGATTTGTCAGAATTTCCGTTA 46
                                    **********************************************

consensus_8360#0      GACAAATCTGATTCAGGATTACTAGTCCAATATGATTCAAAACTTCGAATTCCTTGCATT 540
consensus_8360#1      GACANATCTGATTCAGGATTACTAGTCCAATATGATTCAAAACTTCGAATTCCTTGCATT 106
                      **** *******************************************************

consensus_8360#0      TTCACTGTTTGCAACTTTGAGGTGACAGTATCAACACCTTTTGATAATGAATCCAAAATA 600
consensus_8360#1      TTCACTGTTTGCAACTTTGAGGTGACAGTATCAACACCTTTTGATAATGAATCCAAAATA 166
                      ************************************************************

consensus_8360#0      TTGCTATCTTTAACTTTTTCTTGAACGGATTGAGTTAATTCTTTGGTTTTTTGTGTTGCT 660
consensus_8360#1      TTGCTATCTTTAACTTTTTCTTGAACGGATTGAGTTAATTCCTCG-TGCCGAATCTTGGC 225
                      ***************************************** * * *      * ***  

consensus_8360#0      TGAGATGCTAATTGACTGGTACATTTAGCAGCTACTGAAGCCACTTGACTAACCATTGCC 720
consensus_8360#1      CC---------------------------------------------------------- 227
                                                                                  

consensus_8360#0      CAACCTGACTGCCATGAGTATTTGTCATTTCTTTCAGGTACTAATGAATAATGCCTAGAC 780
consensus_8360#1      ------------------------------------------------------------
                                                                                  

consensus_8360#0      GAAGAATTTGCATATTTACCATT 803
consensus_8360#1      -----------------------


Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)