These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8361#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 635 fasta sequence [TACTGCTATGGTGGAATGCGTAAGAAGA-CAGAAATCCAACCACCCTACCTACCTGATCTCACCAATGAAGCTCTTGGTATTAACTCTCAAAATATATCTGGAAGATCTGTTGGTTCACCTGGAAGTAGTTCTGGTGGAAGCTTCGAAGCTGGATCTCAAAGACATATGTCATCAAACAGTCCACTAATTCGTCTTTTAAAATCCAATGGATCTGATGCCGATACTAGCAGTTGGGCTGATGATCCATCTGTGCGGGCTGTTCTAGGAATTCGTGGTTCCGTCGTTGCAGACGTGGCTCATATTCTCCTGGAATATGGTCACCAAGTTTTTGGCATACATTTCAAGTCGCTCTTTCAGCTTGCCCAACATCTTGTTGCTAACCGTTATGTTAATTCCAGGTCCAAACATGCTTTTGCTTTGATCGCTCATGCTGCTAATCCTCCGAGCTCCTTTTCACCACCACCCTCTACAGCCCTTGCTGAAATGCTTCANAAAGGCTCTGTTAAATCAGCATTCGGTAAAATACANAACANACGTCAGAATTCGTCNTAC-AGTGATTTATCATCCTGTAAATCGGAATGTACTAAAAATGAAAGTTTTCATGCACCTTCAACAAACAATGTTGACTCCCCAGT] [+] EMBL CD096073 [TACTGCTATGGTGGAATGCGTAAGAAGA CAGAAATCCAACCACCCTACCTACCTGATCTCACCAATGAAGCTCTTGGTATTAACTCTCAAAATATATCTGGAAGATCTGTTGGTTCACCTGGAAGTAGTTCTGGTGGAAGCTTCGAAGCTGGATCTCAAAGACATATGTCATCAAACAGTCCACTAATTCGTCTTTTAAAATCCAATGGATCTGATGCCGATACTAGCAGTTGGGCTGATGATCCATCTGTGCGGGCTGTTCTAGGAATTCGTGGTTCCGTCGTTGCAGACGTGGCTCATATTCTCCTGGAATATGGTCACCAAGTTTTTGGCATACATTTCAAGTCGCTCTTTCAGCTTGCCCAACATCTTGTTGCTAACCGTTATGTTAATTCCAGGTCCAAACATGCTTTTGCTTTGATCGCTCATGCTGCTAATCCTCCGAGCTCCTTTTCACCACCACCCTCTACAGCCCTTGCTGAAATGCTTCANAAAGGCTCTGTTAAATCAGCATTCGGTAAAATACANAACANACGTCAGAATTCGTCNTAC AGTGATTTATCATCCTGTAAATCGGAATGTACT ] [+] EMBL CD095685 [TACTGCTATGGTGGAATGCGTAAGAAGACCTGAAATCCAACCACCCTACCTACCTGATCTCACCAATGAAGCTCTTGGTATTAACTCTCAAAATATATCTGGAAGATCTGTTGGTTCACCTGGAAGTAGTTCTGGTGGAAGCTTCGAAGCTGGATCTCAAAGACATATGTCATCAAACAGTCCACTAATTCGTCTTTTAAAATCCAATGGATCTGATGCCGATACTAGCAGTCGGGCTGATGATCCATCTGTGCGGGCTGTTCTAGGAATTCGTGGTTCCGTCGTTGCAGACGTGGCTCATATTCTCCTGGAATATGGTCACCAAGTTTTTGGCATACATTTCAAGTCGCTCTTTCAGCTTGCCCAACATCTTGTTGCTAACCGTTATGTTAATTCCAGGTCCAAACATGCTTTTGCTTTGATCGCTC ] [-] EMBL CD146803 [ TGGAAGCTTCGAAGCTGGATCTCAAAGACATATGTCATCAAACAGTCCACTAATTCGTCTTTTATAATCCAATGGATCTGATGCCGATACTAGCAGTTGGGCTGATGATCCATCTGTGCGGGCTGTTCTAGGAATTCGTGGTTCCGTCGTTGCAGACGTGGCTCATATTCTCCTGGAATATGGTCACCAAG TTTTGGCATACATTTCAAGTCGCTCTTTCAGCTTGCCCAACATCTTGTTGCTAACCGTTATGTTAATTCCAGGTCCAAACATGCTTTTGCTTTGATCGCTCATGCTGCTAATCCTCCGAGCTCCTTTTCACCACCACCCTCTACAGCCCTTGCTGAAATGCTTCAAAAAGGCTCTGTTAAATCAGCATTCGGTAAAATACAAAACAAACGTCAGAATTCGTC TACAAGTGATTTATCATCCTGTAAATCGGAATGTACTAAAAATGAAAGTTTTCATGCACCTTCAACAAACAATGTTGACTCCCCAGT] consensusID : consensus_8361#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence [TACTGCTATGGTGGAATGCGTAAGAAGACAGAAATCCAACCACCCTACCTACCTGATCTCACCAATGAAGCTCTTGGTATTAACTCTCAAAATATATCTGGAAGATCTGTTGGTTCACCTGGAAGTAGTTCTGGTGGAAGCTTCGAAGCTGGATCTCAAAGACATATGTCATCAAACAGTCCACTAATTCGTCTTTTAAAATCCAATGGATCTGATGCCGATACTAGCAGTTGGGCTGATGATCCATCTGTGCGGGCTGCTCCAGGAATTCGTGGTTCCGTCGCTGCACACGTGGCTTACATTCCCCTGGAATATGGTCCACAAGTTCCCTGGCATCACATTCAAGTCCGCTCTTTCACCTCGCCACCATAGCAGTATCCA] [+] EMBL CD096108 [TACTGCTATGGTGGAATGCGTAAGAAGACAGAAATCCAACCACCCTACCTACCTGATCTCACCAATGAAGCTCTTGGTATTAACTCTCAAAATATATCTGGAAGATCTGTTGGTTCACCTGGAAGTAGTTCTGGTGGAAGCTTCGAAGCTGGATCTCAAAGACATATGTCATCAAACAGTCCACTAATTCGTCTTTTAAAATCCAATGGATCTGATGCCGATACTAGCAGTTGGGCTGATGATCCATCTGTGCGGGCTGCTCCAGGAATTCGTGGTTCCGTCGCTGCACACGTGGCTTACATTCCCCTGGAATATGGTCCACAAGTTCCCTGGCATCACATTCAAGTCCGCTCTTTCACCTCGCCACCATAGCAGTATCCA] consensusID : consensus_8361#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 306 fasta sequence [TTCATTGGGTATTGGCCTCTTTTCACCAGGTGGACAGTCTTCTCTTCACTTATCCAACCAAGTGGAGCAAAGTCAAGCCTACACGTGGATTATGTCTCATCTAGAAGAAGATCCATCAACCTGCTTAAGAGAAGATGAAGTGTACGATGACTACAGAGCATATTGTGAGAAGCACCACATGAAAACTCTAAATACGGCAGATTTTGGAAAGGTCATGAAACGCGCATTTCCAAATGTAAAACCACGACGTTTGGGTCAACGAGGACAGTCTCGATACTGCTATGGTGGAATGCGTAAGAGGACAGA] [+] EMBL CD161009 [TTCATTGGGTATTGGCCTCTTTTCACCAGGTGGACAGTCTTCTCTTCACTTATCCAACCAAGTGGAGCAAAGTCAAGCCTACACGTGGATTATGTCTCATCTAGAAGAAGATCCATCAACCTGCTTAAGAGAAGATGAAGTGTACGATGACTACAGAGCATATTGTGAGAAGCACCACATGAAAACTCTAAATACGGCAGATTTTGGAAAGGTCATGAAACGCGCATTTCCAAATGTAAAACCACGACGTTTGGGTCAACGAGGACAGTCTCGATACTGCTATGGTGGAATGCGTAAGAGGACAGA] consensusID : consensus_8361#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 97 fasta sequence [CCCTGGGCATGGGTGGNAAATCAGGAATGATAAATCACTTGTAGACGAATTCTGACGTTTGTTTTGTATTTTACCGAATGCTGATTTAACAGAGCCT] [+] EMBL CD168264 [CCCTGGGCATGGGTGGNAAATCAGGAATGATAAATCACTTGTAGACGAATTCTGACGTTTGTTTTGTATTTTACCGAATGCTGATTTAACAGAGCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8361#0 TACTGCTATGGTGGAATGCGTAAGAAGACAGAAATCCAACCACCCTACCTACCTGATCTC 60 consensus_8361#1 TACTGCTATGGTGGAATGCGTAAGAAGACAGAAATCCAACCACCCTACCTACCTGATCTC 60 consensus_8361#3 ------------------------------------------------------------ consensus_8361#2 ------------------------------------------------------------ consensus_8361#0 ACCAATGAAGCTCTTGGTATTAACTCTCAAAATATATCTGGAAGATCTGTTGGTTCACCT 120 consensus_8361#1 ACCAATGAAGCTCTTGGTATTAACTCTCAAAATATATCTGGAAGATCTGTTGGTTCACCT 120 consensus_8361#3 ------------------------------------------------------------ consensus_8361#2 --------TTCATTGGGTATTGGCCTCTTTTCACCAGGTGGACAGTCT-TCTCTTCACTT 51 consensus_8361#0 GGAAGTAGTTCTGGTGGAAGCTTCGAAGCTGGATCTCAAAGACATATGTCATCAAACAGT 180 consensus_8361#1 GGAAGTAGTTCTGGTGGAAGCTTCGAAGCTGGATCTCAAAGACATATGTCATCAAACAGT 180 consensus_8361#3 -----------------------------------CCCTGGGCATGGGTGGNAAATCAGG 25 consensus_8361#2 ---ATCCAACCAAGTGGAGCAAAGTCAAGCCTACACGTGGATTATGTCTCATCTAGAAGA 108 ** * * ** consensus_8361#0 CCACTAATTCGTCT-TTTAAAATCCAATGGATCTGATGCCGATACTAGCAGTTGGGCTGA 239 consensus_8361#1 CCACTAATTCGTCT-TTTAAAATCCAATGGATCTGATGCCGATACTAGCAGTTGGGCTGA 239 consensus_8361#3 --AATGATAAATCA-CTTGTAGACGAAT---TCTGACGTTTGT-TTTGTATTTTACCGAA 78 consensus_8361#2 AGATCCATCAACCTGCTTAAGAGAAGATGAAGTGTACGATGACTACAGAGCATATTGTGA 168 * ** * ** ** * * * * * consensus_8361#0 TGATCCATCTGTGCGGGCTGTTCTAGGAATTCGTGGTTCCGTCGTTGCAGACGTGGCTCA 299 consensus_8361#1 TGATCCATCTGTGCGGGCTGCTCCAGGAATTCGTGGTTCCGTCGCTGCACACGTGGCTTA 299 consensus_8361#3 TGCTGATTTAACAGAGCCT----------------------------------------- 97 consensus_8361#2 GAAGCACCACATGAAAACTCTAAATACGGCAGATTTTGGAAAGGTCATGAAACGCGCATT 228 ** consensus_8361#0 TATTCTCCTGGAATATGGTCACCAAGTTTT-TGGCAT-ACATTTCAAGTCGCTCTTTCAG 357 consensus_8361#1 CATTCCCCTGGAATATGGTCCACAAGTTCCCTGGCATCACATTCAAGTCCGCTCTTTCAC 359 consensus_8361#3 ------------------------------------------------------------ consensus_8361#2 TCCAAATGTAAAACCACGACGTTTGGGTCAACGAGGACAGTCTCGATACTGCTATGGTGG 288 consensus_8361#0 CTTGCCCAACATCTTGTTGCTAACCGTTATGTTAATTCCAGGTCCAAACATGCTTTTGCT 417 consensus_8361#1 CTCGCC-ACCATAGCAGTATCCA------------------------------------- 381 consensus_8361#3 ------------------------------------------------------------ consensus_8361#2 AATGCGTAAGAGGACAGA------------------------------------------ 306 consensus_8361#0 TTGATCGCTCATGCTGCTAATCCTCCGAGCTCCTTTTCACCACCACCCTCTACAGCCCTT 477 consensus_8361#1 ------------------------------------------------------------ consensus_8361#3 ------------------------------------------------------------ consensus_8361#2 ------------------------------------------------------------ consensus_8361#0 GCTGAAATGCTTCANAAAGGCTCTGTTAAATCAGCATTCGGTAAAATACANAACANACGT 537 consensus_8361#1 ------------------------------------------------------------ consensus_8361#3 ------------------------------------------------------------ consensus_8361#2 ------------------------------------------------------------ consensus_8361#0 CAGAATTCGTCNTACAGTGATTTATCATCCTGTAAATCGGAATGTACTAAAAATGAAAGT 597 consensus_8361#1 ------------------------------------------------------------ consensus_8361#3 ------------------------------------------------------------ consensus_8361#2 ------------------------------------------------------------ consensus_8361#0 TTTCATGCACCTTCAACAAACAATGTTGACTCCCCAGT 635 consensus_8361#1 -------------------------------------- consensus_8361#3 -------------------------------------- consensus_8361#2 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||