cluster # 8369

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Schistosoma mansoni
cluster # 8369 cluster # 8369 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8369#0 length = 990 sequences # 4

consensus_8369#1 length = 313 sequences # 1
consensus_8369#2 length = 251 sequences # 1

consensusID : consensus_8369#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 990
fasta sequence

                              [AACTATGAAAAATACTAAATTCTCTACAAAACCCCCTCTGATTTATTCATTCTGATTGATTTTTTTTTCTTATTCAAAAGTTATGGTGACGCCTATTGGAAAATATACTTTGGATAATTCATGTAATAATGGTCATCTAGACAAAGATGAAGATGATGATGAAAATGATGACGATGAAGAAGAAATCAGTTTGAGTTCTGATGATGAAATTAAATTAAATAATAATTTAGATCGAAAAAATTCACAATCCGTATGGTTTCGTGCACAAAAACATATTGTTGGCCGTGTTCTACAAAATGATCAATCTATTAAATCAATTATTGGAAAAAGAGCATATGAATCATTGAAATCATTACGTTCTTTAATGAAATTACATATAAAACCAGAAAAAGATGTTAAACAATTATATAAGCATTTAATTAAAACTATTGGAAAAATTGGTGTTATATCAAAACAACAAAATTTAACTGAAGAAGATTATACTAATATTAATGAAATAAAAGATAGAAGTCGTACAATTGGTCTTACTATAATTAGTTTTGCACAAACAGATTATACATATAATTATAATTTTATTAAAGAACAATTAGATGATTGTAAAGAGATTATATGTCAAGCGGTTAAACCATATTTAAGTTCAAAATCTATTGAACGTATTAAACATTTATTTAATATAATAAGTTCAAAAGAATTTCTTGATTCAGTATATGATTATACAGCTGAAGAAACTAAAAAAGTATATCTACGTCATTTAACTAAGTGTTTAACACTTTTAATGGAACAAACTAAATAGAATAATGGGTTGTTGTTGTTGTTGTTTTTCTATTCCGTTTAATTAATTGATTCAAACAATCATTGTCCTGTTTTGTGATCTCAGCCATTATAACACAATGTTGTATACATTAACTTCCGAACTATATATAGATATATATGTATGGGTATAGGGGGTGATTCATATGTACGTAGGGTTCAGAATGTTTTCAGTGATTT]

[+] EMBL CD118599             [AACTATGAAAAATACTAAATTCTCTACAAAACCCCCTCTGATTTATTCATTCTGATTGATTTTTTTTTCTTATTCAAAAGTTATGGTGACGCCTATTGGAAAATATACTTTGGATAATTCATGTAATAATGGTCATCTAGACAAAGATGAAGATGATGATGAAAATGATGACGATGAAGAAGAAATCAGTTTGAGTTCTGATGATGAAATTAAATTAAATAATAATTTAGATCGAAAAAATTCACAATCCGTATGGTTTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AI976325             [                                                                                                                 ATAATTCATGTAATAATGGTCATCTAGACAAAGATGAAGATGATGATGAAAATGATGACGATGAAGAAGAAATCAGTTTGAGTTCTGATGATGAAATTAAATTAAATAATAATTTAGATCGAAAAAATTCACAATCCGTATGGTTTCGTGCACAAAAACATATTGTTGGCCGTGTTCTACAAAATGATCAATCTATTAAATCAATTATTGGAAAAAGAGCATATGAATCATTGAAATCATTACGTTCTTTAATGAAATTACATATAAAACCAGAAAAAGATGTTAAACAATTATATAAGCATTTAATTAAAACTATTGGAAAAATTGGTGTTATATCAAAACAACAAAATTTAACTGAAGAAGATTATACTAATATTAATGAAATAAAAGATAGAAGTCGTACAATTGGTCTTACTATAATTAGTTTTGCACAAACAGATTATACATATAATTATAATTTTATTAAAGAACAATTAGATGATTGTAAAGAGATTATATGTCAAGCGGTTA                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD152767             [                                                                                                                                                                                                                   AAATTAAATAATAATTTAGATCGAAAAAATTCACAATCCGTATGGTTTCGTGCACAAAAACGTATTGTTGGCCATGTTCTACAAAATGATCAATCTATTAAATCAATTATTGGAAAAAGAGCATATGAATCATTGAAATCATTACGTTCTTTAATGAAATTACATATAAAACCAGAAAAAGATGTTAAACGATTATATAAGCATTTAATTAAAACTATTGGAAAAATTGGTGTTATATCAAAACAACAAAATTTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD116877             [                                                                                                                                                                                                                                                                                                                                                              CATTACGTTCTTTAATGAAATTACATATAAAACCAGAAAAAGATGTTAAACAATTATATAAGCATTTAATTAAAACTATTGGAAAAATTGGTGTTATATCAAAACAACAAAATTTAACTGAGGAAGATTATACTAATATTAATGAAATAAAAGATAGAAGTCGTACAATTGGTCTTACTATAATTAGTTTTGCACAAACAGATTATACATATAATTATAATTTTATTAAAGAACAATTAGATGATTGTAAAGAGATTATATGTCAAGCGGTTAAACCATATTTAAGTTCAAAATCTATTGAACGTATTAAACATTTATTTAATATAATAAGTTCAAAAGAATTTCTTGATTCAGTATATGATTATACAGCTGAAGAAACTAAAAAAGTATATCTACGTCATTTAACTAAGTGTTTAACACTTTTAATGGAACAAACTAAATAGAATAATGGGTTGTTGTTGTTGTTGTTTTTCTATTCCGTTTAATTAATTGATTCAAACAATCATTGTCCTGTTTTGTGATCTCAGCCATTATAACACAATGTTGTATACATTAACTTCCGAACTATATATAGATATATATGTATGGGTATAGGGGGTGATTCATATGTACGTAGGGTTCAGAATGTTTTCAGTGATTT]




>consensus_8369#0
AACTATGAAAAATACTAAATTCTCTACAAAACCCCCTCTGATTTATTCATTCTGATTGAT
TTTTTTTTCTTATTCAAAAGTTATGGTGACGCCTATTGGAAAATATACTTTGGATAATTC
ATGTAATAATGGTCATCTAGACAAAGATGAAGATGATGATGAAAATGATGACGATGAAGA
AGAAATCAGTTTGAGTTCTGATGATGAAATTAAATTAAATAATAATTTAGATCGAAAAAA
TTCACAATCCGTATGGTTTCGTGCACAAAAACATATTGTTGGCCGTGTTCTACAAAATGA
TCAATCTATTAAATCAATTATTGGAAAAAGAGCATATGAATCATTGAAATCATTACGTTC
TTTAATGAAATTACATATAAAACCAGAAAAAGATGTTAAACAATTATATAAGCATTTAAT
TAAAACTATTGGAAAAATTGGTGTTATATCAAAACAACAAAATTTAACTGAAGAAGATTA
TACTAATATTAATGAAATAAAAGATAGAAGTCGTACAATTGGTCTTACTATAATTAGTTT
TGCACAAACAGATTATACATATAATTATAATTTTATTAAAGAACAATTAGATGATTGTAA
AGAGATTATATGTCAAGCGGTTAAACCATATTTAAGTTCAAAATCTATTGAACGTATTAA
ACATTTATTTAATATAATAAGTTCAAAAGAATTTCTTGATTCAGTATATGATTATACAGC
TGAAGAAACTAAAAAAGTATATCTACGTCATTTAACTAAGTGTTTAACACTTTTAATGGA
ACAAACTAAATAGAATAATGGGTTGTTGTTGTTGTTGTTTTTCTATTCCGTTTAATTAAT
TGATTCAAACAATCATTGTCCTGTTTTGTGATCTCAGCCATTATAACACAATGTTGTATA
CATTAACTTCCGAACTATATATAGATATATATGTATGGGTATAGGGGGTGATTCATATGT
ACGTAGGGTTCAGAATGTTTTCAGTGATTT

consensusID : consensus_8369#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 313
fasta sequence

                              [TTACTTGTTCACGTTGTTACTTATGGTGACGCCTATTGGAAAATATACTTTGGATAATTCATGTAATAATGGTCATCTAGACAAAGATGAAGATGATGATGAAAATGATGACGATGAAGAAGAAATCAGTTTGAGTTCTGATGATGAAATTAAATTGAATAATAATTTAGATCGAAAAAATTCACAATCCGTATGGTTTCGTGCACAAAAACATATTGTTGGCCGTGTTCTACAAAATGATCAATCTATTAAATCAATTATTGGAAAAAGAGCATATGAATCATTGAAATCATTACGTTCTTTAATGAAATTA]

[-] EMBL CD189172             [TTACTTGTTCACGTTGTTACTTATGGTGACGCCTATTGGAAAATATACTTTGGATAATTCATGTAATAATGGTCATCTAGACAAAGATGAAGATGATGATGAAAATGATGACGATGAAGAAGAAATCAGTTTGAGTTCTGATGATGAAATTAAATTGAATAATAATTTAGATCGAAAAAATTCACAATCCGTATGGTTTCGTGCACAAAAACATATTGTTGGCCGTGTTCTACAAAATGATCAATCTATTAAATCAATTATTGGAAAAAGAGCATATGAATCATTGAAATCATTACGTTCTTTAATGAAATTA]




>consensus_8369#1
TTACTTGTTCACGTTGTTACTTATGGTGACGCCTATTGGAAAATATACTTTGGATAATTC
ATGTAATAATGGTCATCTAGACAAAGATGAAGATGATGATGAAAATGATGACGATGAAGA
AGAAATCAGTTTGAGTTCTGATGATGAAATTAAATTGAATAATAATTTAGATCGAAAAAA
TTCACAATCCGTATGGTTTCGTGCACAAAAACATATTGTTGGCCGTGTTCTACAAAATGA
TCAATCTATTAAATCAATTATTGGAAAAAGAGCATATGAATCATTGAAATCATTACGTTC
TTTAATGAAATTA

consensusID : consensus_8369#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 251
fasta sequence

                              [TTAACACTCTTAATGGAACAAACTAAATAGAATAATGGGTTGTTGTTGTTGTTGTTGTCGTCTTTCTATTCCATTTAATTAATNGATTCAAACAATCATCGTCCTGTTTTGTGATCTCAGCCATTATGACACAATGTTGGTCTACATTAACTNCCGAACTATNTATAGATATATATGTATGGGCTATAGGGGGNGATCTCACCCTNTTNCGCNGGGCCCANAATNTCCTTTCAGTCACCTCTTTCNACTAT]

[+] EMBL SM7031               [TTAACACTCTTAATGGAACAAACTAAATAGAATAATGGGTTGTTGTTGTTGTTGTTGTCGTCTTTCTATTCCATTTAATTAATNGATTCAAACAATCATCGTCCTGTTTTGTGATCTCAGCCATTATGACACAATGTTGGTCTACATTAACTNCCGAACTATNTATAGATATATATGTATGGGCTATAGGGGGNGATCTCACCCTNTTNCGCNGGGCCCANAATNTCCTTTCAGTCACCTCTTTCNACTAT]




>consensus_8369#2
TTAACACTCTTAATGGAACAAACTAAATAGAATAATGGGTTGTTGTTGTTGTTGTTGTCG
TCTTTCTATTCCATTTAATTAATNGATTCAAACAATCATCGTCCTGTTTTGTGATCTCAG
CCATTATGACACAATGTTGGTCTACATTAACTNCCGAACTATNTATAGATATATATGTAT
GGGCTATAGGGGGNGATCTCACCCTNTTNCGCNGGGCCCANAATNTCCTTTCAGTCACCT
CTTTCNACTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8369#0      AACTATGAAAAATACTAAATTCTCTACAAAACCCCCTCTGATTTATTCATTCTGATTGAT 60
consensus_8369#1      -----------------------------------------------------------T 1
consensus_8369#2      ------------------------------------------------------------
                                                                                  

consensus_8369#0      TTTTTTTTCTTATTCAAAAGTTATGGTGACGCCTATTGGAAAATATACTTTGGATAATTC 120
consensus_8369#1      TACTTGTTCACGTT-GTTACTTATGGTGACGCCTATTGGAAAATATACTTTGGATAATTC 60
consensus_8369#2      -------------TTAACACTCTTAATGGAACAAACTAAATAGAATAAT--GGGTTGTTG 45
                                   *    * *  *  **   *  * *  * *  *** *  ** *  ** 

consensus_8369#0      ATGTAATAATGGTCATCTAGACAAAG-ATGAAGATGATG-ATGAAAATGATGACGATGAA 178
consensus_8369#1      ATGTAATAATGGTCATCTAGACAAAG-ATGAAGATGATG-ATGAAAATGATGACGATGAA 118
consensus_8369#2      TTGTTGTTGTTGTCGTCTTTCTATTCCATTTAATTAATNGATTCAAACAATCATCGTCCT 105
                       ***  *  * *** ***    *    **  *  * **  **  ***  ** *   *   

consensus_8369#0      GAAGAAATCAGTTTGAGTTCTGATGATGAAATTAAATTAAATAATAATTTAGATCGAAAA 238
consensus_8369#1      GAAGAAATCAGTTTGAGTTCTGATGATGAAATTAAATTGAATAATAATTTAGATCGAAAA 178
consensus_8369#2      GTTTTG--TGATCTCAGCCATTATGACACAATGTTGGTCTACATTAACTN---CCGAACT 160
                      *          * * **   * ****   ***     *  * * *** *     ****  

consensus_8369#0      AATTCACAATCCGTATGGTTTCGTGCACAAAAACATATTGTTGGCCGTGTTCTACAAAAT 298
consensus_8369#1      AATTCACAATCCGTATGGTTTCGTGCACAAAAACATATTGTTGGCCGTGTTCTACAAAAT 238
consensus_8369#2      ATNTATAGATATATATG-TATGGGCTATAGGGGGNGAT--CTCACCCTNTTNCGCNGGGC 217
                      *  *    **   **** * * *   * *       **   *  ** * **   *     

consensus_8369#0      GATCAATCTA--TTAAATCAATTATTGGAAAAAGAGCATATGAATCATTGAAATCATTAC 356
consensus_8369#1      GATCAATCTA--TTAAATCAATTATTGGAAAAAGAGCATATGAATCATTGAAATCATTAC 296
consensus_8369#2      CCANAATNTCCTTTCAGTCACCTCTTTCNACTAT-------------------------- 251
                          *** *   ** * ***  * **   *  *                           

consensus_8369#0      GTTCTTTAATGAAATTACATATAAAACCAGAAAAAGATGTTAAACAATTATATAAGCATT 416
consensus_8369#1      GTTCTTTAATGAAATTA------------------------------------------- 313
consensus_8369#2      ------------------------------------------------------------
                                                                                  

consensus_8369#0      TAATTAAAACTATTGGAAAAATTGGTGTTATATCAAAACAACAAAATTTAACTGAAGAAG 476
consensus_8369#1      ------------------------------------------------------------
consensus_8369#2      ------------------------------------------------------------
                                                                                  

consensus_8369#0      ATTATACTAATATTAATGAAATAAAAGATAGAAGTCGTACAATTGGTCTTACTATAATTA 536
consensus_8369#1      ------------------------------------------------------------
consensus_8369#2      ------------------------------------------------------------
                                                                                  

consensus_8369#0      GTTTTGCACAAACAGATTATACATATAATTATAATTTTATTAAAGAACAATTAGATGATT 596
consensus_8369#1      ------------------------------------------------------------
consensus_8369#2      ------------------------------------------------------------
                                                                                  

consensus_8369#0      GTAAAGAGATTATATGTCAAGCGGTTAAACCATATTTAAGTTCAAAATCTATTGAACGTA 656
consensus_8369#1      ------------------------------------------------------------
consensus_8369#2      ------------------------------------------------------------
                                                                                  

consensus_8369#0      TTAAACATTTATTTAATATAATAAGTTCAAAAGAATTTCTTGATTCAGTATATGATTATA 716
consensus_8369#1      ------------------------------------------------------------
consensus_8369#2      ------------------------------------------------------------
                                                                                  

consensus_8369#0      CAGCTGAAGAAACTAAAAAAGTATATCTACGTCATTTAACTAAGTGTTTAACACTTTTAA 776
consensus_8369#1      ------------------------------------------------------------
consensus_8369#2      ------------------------------------------------------------
                                                                                  

consensus_8369#0      TGGAACAAACTAAATAGAATAATGGGTTGTTGTTGTTGTTGTTTTTCTATTCCGTTTAAT 836
consensus_8369#1      ------------------------------------------------------------
consensus_8369#2      ------------------------------------------------------------
                                                                                  

consensus_8369#0      TAATTGATTCAAACAATCATTGTCCTGTTTTGTGATCTCAGCCATTATAACACAATGTTG 896
consensus_8369#1      ------------------------------------------------------------
consensus_8369#2      ------------------------------------------------------------
                                                                                  

consensus_8369#0      TATACATTAACTTCCGAACTATATATAGATATATATGTATGGGTATAGGGGGTGATTCAT 956
consensus_8369#1      ------------------------------------------------------------
consensus_8369#2      ------------------------------------------------------------
                                                                                  

consensus_8369#0      ATGTACGTAGGGTTCAGAATGTTTTCAGTGATTT 990
consensus_8369#1      ----------------------------------
consensus_8369#2      ----------------------------------