These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8376#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1121 fasta sequence [TCCGAGCCAAAAATTCGGCACGAGAGTTTATATTAGGAAGTACATAAATAAAAAATGAATTATTAACTGGACCTTCAGCAGGAATTCGGTTATCGAAGTTTTAACGAAAACAATTTACATAACATGGAAAATAATCTAGTTTATTGAAAGTTCATTTTTCTCATCAACTCTTATCAGAAAATACAACAATAAATCAACAAAAAAAAAGAAAAAAAACAGATTAACGATGGAAAAAACCCTTGATATTCCATGGCCATTTGATTGTTTTGGATTAGTGGCAACTGGAGCTACCTTAGTTCAAATGAGAATATTCACAGACAGTCAGATGATGCATTTCGTGCAGCCAGAATGCCTGGAGAGTACCCTATGCCAATGTTTGACTTCATCCCACCATCTGCACTACCTAAATTACCAAACTACGAAGAATGCGTAAATACTGGTCCACCAGCAAATGACGAAGCTCCACCTCCACCAACTCCACTTTCTTTTTATTCAGCTAATTCAAATGGTCAACCAGCCTTACATTTTACTATCCACAGTCAACCCGACTTAGTTGCTCATATTAACAGTTCTCAAGCACTTGCTAGTCCTTTATCCACACCTCCACCAACTTATTCATCAACTTGTTTGCACAGGCCATCAACGACGAGTCGAACAGTTGAAGGTACATCTCGAACAGTTGAAAACTCATCTCATACAACATCAAGGCAATTATCGGTGGACCGTTAATTAATTGTTATCTTAATATTTTTTTCCTAATTACTGTTTCCTACTCTCGAAGTGGTGGATTACCTGTTTCTCCCTGTTGTATCTTATGCCATTCTTTCAGTTGTGGGTGTTTTGGTCTTTTTTCTTGTTTTAATTACAAATATGGAGATGAAAATATGTTTCTGTGATCATTGAACAGTTAAGTTAATATACTACTACGATTTTGATGAGTAGTTATAAATCTTAGAGATAAAATAATCAGTTCAGATTTTTTTCTAGATATTTTTTTATCAACCTTTCACTTTGTTTCCCTTTTGAAATATCAAACATATCAAGGATTTTCTGATAACAAATAACACAAGCGTATACTTTCGTGGTTGTCTGCTGTTATATAAGAAAATTAAATATACTTA] [+] EMBL CD082672 [TCCGAGCCAAAAATTCGGCACGAGAGTTTATATTAGGAAGTACATAAATAAAAAATGAATTATTAACTGGACCTTCAGCAGGAATTCGGTTATCGAAGTTTTAACGAAAACAATTTACATAACATGGAAAATAATCTAGTTTATTGAAAGTTCATTTTTCTCATCAACTCTTATCAGAAAATACAACAATAAATCAACAAAAAAAAAGAAAAAAAACAGATTAACGATGGAAAAAACCCTTGATATTCCATGGCCATTTGATTGTTTTGGATTAGTGGCAACTGGAGCTACCTTAGTTCAAATGAGAATATTCACAGACAGTCAGATGATGCATTTCGTGCAGCCAGAATGCCTGGAGAGTACCCTATGCCAATGTTTGACTTCATCCCACCATCTGCACTACCTAAATTACCAAACTACGAAGAATGCGTAAATACTGGTCCACCAGCAAATGACGAAGCTCCACCTCCACCAACTCCACTTTCTTTTTATTCAGCTAATTCAAATGGTCAACCAGCCTTACATTTTACTATCCACAGTCAACCCGACTTAGTTGCTCATATTAACAGTTCTCAAGCACTTGCTAGTCCTTTATCCACACCTCCACCAACTTATTCATCAACTTGTTTGCACAGGCCATCAACGACGAGTCGAACAGTTGAAGGTACAT ] [-] EMBL CD076267 [ CAACCCGACTTAGTTGCTCATATTAACAGTTCTCAAGCACTTGCTAGTCCTTTATCCACACCTCCACCAACTTATTCATCAACTTGTTTGCACAGGCCATCAACGACGAGTCGAACAGTTGAAGGTACATCTCGAACAGTTGAAAACTCATCTCATACAACATCAAGGCAATTATCGGTGGACCGTTAATTAATTGTTATCTTAATATTTTTTTCCTAATTACTGTTTCCTACTCTCGAAGTGGTGGATTACCTGTTTCTCCCTGTTGTATCTTATGCCATTCTTTCAGTTGTGGGTGTTTTGGTCTTTTTTCTTGTTTTAATTACAAATATGGAGATGAAAATATGTTTCTGTGATCATTGAACAGTTAAGTTAATATACTACTACGATTTTGATGAGTAGTTATAAATCTTAGAGATAAAATAATCAGTTCAGATTTTTTTCTAGATATTTTTTTATCAACCTTTCACTTTGTTTCCCTTTTGAAATATCAAACATATCAAGGATTTTCTGATAACAAATAACACAAGCGTATACTTTCGTGGTTGTCTGCTGTTATATAAGAAAATTAAATATACTTA] [-] EMBL CD076870 [ GTTGTATCTTATGCCATTCTTTCAGTTGTGGGTGTTTTGGTCTCTTTTCTTGTTTTAATGACAAATATGGAGATGAAAATATGTTTCTGTGATCATTGAACAGTTAAGTTAATATACTACTACGATTTTGATGAGTAGTTATAAATCTTAGAGATAAAATAATCAGTTCAGATTTTTTTCTAGATATTTTTTTATCAACCTTTCACTTTGTTTCCCTTTTGAAATATCAAACATATCAAGGATTTTCTGATAACAAATAACACAAGCGTATACTTTCGTGGTTGTCTGCTGTTATATAAGAAAATTAAATATACTTA] consensusID : consensus_8376#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [CCCCCGCCCAAATTTTTTTTTTTCTCCCAGTAATATTCAGTGTTTAACCAGCCCTTTATTTTTTTAAACCCAAGATAACCGGGGTTTGTGGGTGAAATAAACACGTTTTAAAAGCATGGAATACCTTTTTACCCACTCCTCCCCCAATTTTTTTTTTAATGTTGTTCCCACAGCCAATCAGCGAGTAGTGGAACATTTAAGGGTACATCTCAAACAGTTGAAATCTCATTCTCATACAACATCAAGCAAATTATCGGTGGACCGTAAATAAATTGTTATCTAAATATTTTTTTCAAAATTACTGTTTCCTACTCTAAAAGTGGTGGATCACTTGTTTCTCCCTGTTGTATCTTAAGCCATTCTTTCAGTTGTGGGTGTTTTGGTCTTTTTTCTTGTTTCAATCACAAATATGGAGATGAAAATATGTTTCTGTGATCATTGAACAGTTAAGTTAATATACTACTACGATTTTGATGAGTAGTTATAAATCTTAGAGATAAAATAATCAGTTCAGATTTTTTTCTAGATATTTTTTTATCAACCTTTCACTTTGTTTCCCTTTTGAAATATCAAACATATCAAGGATTTTCTGATAACAAATAACACAAGCGTATACTTTCGTGGTTGTCTGCTGTTATATAAGAAAATTAAATATACTTA] [-] EMBL CD076886 [CCCCCGCCCAAATTTTTTTTTTTCTCCCAGTAATATTCAGTGTTTAACCAGCCCTTTATTTTTTTAAACCCAAGATAACCGGGGTTTGTGGGTGAAATAAACACGTTTTAAAAGCATGGAATACCTTTTTACCCACTCCTCCCCCAATTTTTTTTTTAATGTTGTTCCCACAGCCAATCAGCGAGTAGTGGAACATTTAAGGGTACATCTCAAACAGTTGAAATCTCATTCTCATACAACATCAAGCAAATTATCGGTGGACCGTAAATAAATTGTTATCTAAATATTTTTTTCAAAATTACTGTTTCCTACTCTAAAAGTGGTGGATCACTTGTTTCTCCCTGTTGTATCTTAAGCCATTCTTTCAGTTGTGGGTGTTTTGGTCTTTTTTCTTGTTTCAATCACAAATATGGAGATGAAAATATGTTTCTGTGATCATTGAACAGTTAAGTTAATATACTACTACGATTTTGATGAGTAGTTATAAATCTTAGAGATAAAATAATCAGTTCAGATTTTTTTCTAGATATTTTTTTATCAACCTTTCACTTTGTTTCCCTTTTGAAATATCAAACATATCAAGGATTTTCTGATAACAAATAACACAAGCGTATACTTTCGTGGTTGTCTGCTGTTATATAAGAAAATTAAATATACTTA] consensusID : consensus_8376#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 607 fasta sequence [TAAGTTAATCATTACAAATCTTCAACCAAATTAACAAATCAGTTTGTTAGTTTTCAAATGACAAATCGCTAACTTTAAAAATGAAACATAACCAGTCGATGATTTTTTAAAGATCATTTTAAAAAGATCCTGATATTCATGCTACTTATTTAATGAATTTTAAGTAATGATTTTAATTTTTTTAAAATATTCAAAAACTAATCATTCTCTTAAACATGAATCTGTATCAGTTTTTTTCCTTTTAAATTACCATTAAACTATAAATTCCATCATTTTTTTGTTTCTCTGGATAGAAGTTTTAACGAAAACAATTTACATAACATGGAAAATAATCTAGTTTATTGAAAGTTCATTTTTCTCATCAACTCTTATCAGAAAATACAACAATAAATCAACAAAAAAAAAGAAAAAAAACAGATTAACGATGGAAAAAACCCTTGATATTCCATGGCCATTTGATTGTTTTGGATTAGTGGCAACTGGAGCTACCTCAGGTGTGTTGGCTATATTACTTGTTNTATTCCTATTACTTTTGTGTCTTCCATGGAATAAGTGTGATCGATACTGGTCTTGCTGTCGTTGTTGGCTTTTTTAGTCAATGAGAATA] [+] EMBL CD164079 [TAAGTTAATCATTACAAATCTTCAACCAAATTAACAAATCAGTTTGTTAGTTTTCAAATGACAAATCGCTAACTTTAAAAATGAAACATAACCAGTCGATGATTTTTTAAAGATCATTTTAAAAAGATCCTGATATTCATGCTACTTATTTAATGAATTTTAAGTAATGATTTTAATTTTTTTAAAATATTCAAAAACTAATCATTCTCTTAAACATGAATCTGTATCAGTTTTTTTCCTTTTAAATTACCATTAAACTATAAATTCCATCATTTTTTTGTTTCTCTGGATAGAAGTTTTAACGAAAACAATTTACATAACATGGAAAATAATCTAGTTTATTGAAAGTTCATTTTTCTCATCAACTCTTATCAGAAAATACAACAATAAATCAACAAAAAAAAAGAAAAAAAACAGATTAACGATGGAAAAAACCCTTGATATTCCATGGCCATTTGATTGTTTTGGATTAGTGGCAACTGGAGCTACCTCAGGTGTGTTGGCTATATTACTTGTTNTATTCCTATTACTTTTGTGTCTTCCATGGAATAAGTGTGATCGATACTGGTCTTGCTGTCGTTGTTGGCTTTTTTAGTCAATGAGAATA] [+] EMBL CD163913 [TAAGTTAATCATTACAAATCTTCAACCAAATTAACAAATCAGTTTGTTAGTTTTCAAATGACAAATCGCTAACTTTAAAAATGAAACATAACCAGTCGATGATTTTTTAAAGATCATTTTAAAAAGATCCTGATATTCACGCTACTTATTCAATGAATTTTAAGTAATGATTTCAATTTTTTTAAAATATTCAAAAACTAATCATTCTTTTAAACATGAATCTGTATCAGTTTTTTTCCTTTTAAATTACCATTAAACTATAAATTCCATCATTTTTTTGTTTCTCTGAATAGAAGTTTTAACGAAAACAATTTACATAACATGGAAAATAATCTAGTTTATTGAAAGTTCATTTTTCTCATCAACTCTTATCAGAAAATACAACAATAAATCAACAAAAAAAAAGAAAAAAAACAGATTAACGATGGAAAAAACCCTTGATATTCCATGGCCATTTGATTGTTTTGGATTAGTGGCAACTGGAGCTACCTTAGGTGTGTTGGCTATATTACTTGTTTTATTCCTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8376#0 TCCGAGCCAAAAATTCGGCACGAGAGTTTATATTAGGAAGTACATAAATAAAAAATGAAT 60 consensus_8376#1 ------------------------------------------------------------ consensus_8376#2 ------------------------------------------------------------ consensus_8376#0 TATTAACTGGACCTTCAGCAGGAATTCGGTTATCGAAGTTTTAACGAAAACAATTTACAT 120 consensus_8376#1 ------------------------------------------------------------ consensus_8376#2 ------------------------------------------------------------ consensus_8376#0 AACATGGAAAATAATCTAGTTTATTGAAAGTTCATTTTTCTCATCAACTCTTATCAGAAA 180 consensus_8376#1 ------------------------------------------------------------ consensus_8376#2 ------------------------------------------------------------ consensus_8376#0 ATACAACAATAAATCAACAAAAAAAAAGAAAAAAAACAGATTAACGATGGAAAAAACCCT 240 consensus_8376#1 ------------------------------------------------------------ consensus_8376#2 ------------------------------------------------------------ consensus_8376#0 TGATATTCCATGGCCATTTGATTGTTTTGGATTAGTGGCAACTGGAGCTACCTTAGTTCA 300 consensus_8376#1 ------------------------------------------------------------ consensus_8376#2 ------------------------------------------------------------ consensus_8376#0 AATGAGAATATTCACAGACAGTCAGATGATGCATTTCGTGCAGCCAGAATGCCTGGAGAG 360 consensus_8376#1 ------------------------------------------------------------ consensus_8376#2 ------------------------------------------------------------ consensus_8376#0 TACCCTATGCCAATGTTTGACTTCATCCCACCATCTGCACTACCTAAATTACCAAACTAC 420 consensus_8376#1 ------------------------------------------------------------ consensus_8376#2 ------------------------------------------------------------ consensus_8376#0 GAAGAATGCGTAAATACTGGTCCACCAGCAAATGACGAAGCTCCACCTCCACCAACTCCA 480 consensus_8376#1 ---------------------------------------------CCCCCGCCCAAATTT 15 consensus_8376#2 ------------------------------------------------------------ consensus_8376#0 CTTTCTTTTTATTCAGCTAATTCAAATGGTCAACCAGCCTTACATTTTACTATCCACA-G 539 consensus_8376#1 TTTTTTTTCT-CCCAGTAATATTCAGTGTTTAACCAGCCCTTTATTTTTTTAAACCCAAG 74 consensus_8376#2 ------------------------------TAAGTTAATCATTACAAATCTTCAACCAAA 30 ** * * ** consensus_8376#0 TCAACCCG--ACTTAGTTGCTCATATTAACAGTTCTCAAGCACTTGC--TAGTCCTTTAT 595 consensus_8376#1 ATAACCGG--GGTTTGTGGGTGAAATAAACACGTTTTAAAAGCATGGAATACCTTTTTAC 132 consensus_8376#2 TTAACAAATCAGTTTGTTAGTTTTCAAATGACAAATCGCTAACTTTAAAAA-----TGAA 85 *** ** ** * * * * * * * * * consensus_8376#0 CCACACCTCCACCAACTTATTCATCAAC-TTGTTTGCACAGGCCATCAACGACGAGTCGA 654 consensus_8376#1 CCACTCCTCCCCCAATTTTTTTTTTAATGTTGTTCCCACAGCCAATCAGCGAGTAGTGGA 192 consensus_8376#2 ACATAAC-CAGTCGATGATTTTTTAAAGATCATTT-TAAAAAGATCCTGATATTCATGCT 143 ** * * * * ** * ** * ** * * * * * consensus_8376#0 ACAGTTGAAGGTACATCTCGAACAGTTGAAAACTCAT-CTCATACAACATCAAGGCAATT 713 consensus_8376#1 ACATTTAAGGGTACATCTCAAACAGTTGAAATCTCATTCTCATACAACATCAAGCAAATT 252 consensus_8376#2 ACTTATTTAA-TGAATTTTAAGTAAT--GATTTTAATTTTTTTAAAATATTCAAAAACTA 200 ** * * ** * * * * * * ** * ** ** ** * * * consensus_8376#0 ATCGGTGGACCGTTAATTAATTGTTATCTTAATATTTTTTTCCTAATTACTGTTTCCTAC 773 consensus_8376#1 ATCGGTGGACCGTAAATAAATTGTTATCTAAATATTTTTTTCAAAATTACTGTTTCCTAC 312 consensus_8376#2 ATCATTCTCTTAAACATGAATCTGTATCAGTTTTTTTCCTTTTAAATTACCATTA--AAC 258 *** * ** *** **** * *** ** ****** ** ** consensus_8376#0 TCTCGAAGTGGTGGATTACCTGTTTCTCCCTGTTGTATCTT------ATGCCATTCTTTC 827 consensus_8376#1 TCTAAAAGTGGTGGATCACTTGTTTCTCCCTGTTGTATCTT------AAGCCATTCTTTC 366 consensus_8376#2 TATAAATTCCATCATTTTTTTGTTTCTCTGGATAGAAGTTTTAACGAAAACAATTTACAT 318 * * * * * ******** * * * ** * * *** consensus_8376#0 AG--TTGTGGGTGTTTTGGTCTTTTTT---CTTGTTTTAATTACAAATATGGAGATGAAA 882 consensus_8376#1 AG--TTGTGGGTGTTTTGGTCTTTTTT---CTTGTTTCAATCACAAATATGGAGATGAAA 421 consensus_8376#2 AACATGGAAAATAATCTAGTTTATTGAAAGTTCATTTTTCTCATCAACTCTTATCAGAAA 378 * * * * * * ** * ** * *** * * ** * **** consensus_8376#0 ATATGTTTCTGTGATCATTGAACAGTTAAGTTAATATACTACTACGATTTTGATGAGTAG 942 consensus_8376#1 ATATGTTTCTGTGATCATTGAACAGTTAAGTTAATATACTACTACGATTTTGATGAGTAG 481 consensus_8376#2 ATACAACAATA-AATCAACAAAAAA--AAAGAAAAAAAACAGATTAACGATGGAAAAAAC 435 *** * **** ** * ** ** * * * * ** * * consensus_8376#0 TTATAAATCTTAGAGATAAAATAATCAGTTCAGATTTTTTTCTAGATATTTTTTTATCAA 1002 consensus_8376#1 TTATAAATCTTAGAGATAAAATAATCAGTTCAGATTTTTTTCTAGATATTTTTTTATCAA 541 consensus_8376#2 CCTTGATATTCCATGGCCATTTGATTGTTTTGGATTAGTGGC-AACTGGAGCTACCTCAG 494 * * * * * * ** ** **** * * * * * *** consensus_8376#0 CCTTTCACTTTGTTTCCCTTTTGAAATATCAAACATATCAAGGATTTTCTGATAACAAAT 1062 consensus_8376#1 CCTTTCACTTTGTTTCCCTTTTGAAATATCAAACATATCAAGGATTTTCTGATAACAAAT 601 consensus_8376#2 GTGTGTTGGCTATATTACTTGTTNTATTCCTATTACTTTTGTGTCTTCCATGGAATAAGT 554 * * * * *** * ** * * * * * ** * ** ** * consensus_8376#0 AACACAAGCGTATACTTTCGTGGTTGTCTGCTGTTATATAAGAAAATTAAATATACTTA 1121 consensus_8376#1 AACACAAGCGTATACTTTCGTGGTTGTCTGCTGTTATATAAGAAAATTAAATATACTTA 660 consensus_8376#2 GTGATCGATAC-TGGTCTTGCTGTCGTTGTTGGCTTTTTTAGTCAATGAGA-ATA---- 607 * * * * * ** ** * * * * ** *** * * *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||