cluster # 8380

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Schistosoma mansoni
cluster # 8380 cluster # 8380 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8380#0 length = 500 sequences # 4

consensus_8380#1 length = 483 sequences # 1
consensus_8380#2 length = 299 sequences # 1

consensusID : consensus_8380#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 500
fasta sequence

                              [GGCTGGTACCTTGGCGTGGTAGACGGGCTTGTGTGTTGCAGTGATCCTGAGGGCTATACCGACCGAGGTTCAACCATGTCGGGAAGGCTGAAGGTGAGCAACGAGACGAAATCCAGCTACTGTTTAGTA-ACTTTAAATTACAAACATCTTTGGATGATGTTCTAAAATTCTTCCAGCCTCTCCCCTGCTAGAAATGTGTGCAGTGGAAGAAAACGTACTCGGTCTGAAACATCTATATGTTTGAATGATAGTACCTCGGAATCACCGTCTCCAAAGTTTTCAGCCTCAGCTCTATCAACCAAAGATTTGTTCTGTTTAATGAGTACATTAAATAGCTGTTTTGGTCCTGCCTATGATTTCCTGGCTGCTAGAAGTGACGAATTTTGTTTGGAACCTGAACTATGGCTTGTAAAACATTATATTTCTCGGTTCTGTTCCATTTACGTGGATAAATACGAAGATCTAGCACCTCATCTTTGGAAAGTTATCGGTGATGAAAT]

[+] EMBL CD198283             [GGCTGGTACCTTGGCGTGGTAGACGGGCTTGTGTGTTGCAGTGATCCTGAGGGCTATACCGACCGAGGTTCAACCATGTCGGGAAGGCTGAAGGTGAGCAACGAGACGAAATCCAGCTACTGTTTAGTAGACTTTAAATTACAAACATCTTTGGATGATGTTCTAAAATTCTTCCAGCCTCTCCCCTGCTAGAAATGTGTGCAGTGGAAGAAAACGTACTCGGTCTGAAACATCTATATGTTTGAATGATAGTACCTCGGAATCACCGTCTCCAAAGTTTTCAGCCTCAGCTCTATCAACCANAGATTTGTTCTGTTTAATGAGTACATTAAATAGCTGTTTTGGTCCTGCCTATGATTT                                                                                                                                             ]
[+] EMBL CD198215             [GGCTGGTACCTTGGCGTGTTAGACGGGCTTGTGTGTTGCAGCGATCCTGAGGGCTATACCGACCGAGGTTCAACCATGTCGGGAAGGCTGAAGGTGAGCAACGAGACGAAATCCAGCTACTGTTTAGTA ACTTTAAATTACAAACATCTTTGGATGATGTTCTAAAATTCTTCCAGCCTCTCCCCTGCTAGAAATGTGTGCAGTGGAAGAAAACGTACTCGGTCTGAAACATCTATATGTTTGAATGATAGTACCTCGGAATCACCGTCTCCCGAGGTGTCAGCCTCAGCT                                                                                                                                                                                                                 ]
[+] EMBL CD179782             [          TTGGCGTGGTAGACGGGCTTGTGTGTTGCAGTGATCCTGAGGGCTATACCGACCGAGGTTCAACCATGTCGGGAAGGCTGAAGGTGAGCAACGAGACGAAATCCAGCTACTGTTTAGTA ACTTTAAATTACAAACATCTTTGGATGATGTTCTAAAATTCTTCCAGCCTCTCCCCTGCTAGAAATGTGTGCAGTGGAAGAAAACGTACTCGGTCTGAAACATCTATATGTTTGAATGATAGTACCTCGGAATCACCATCTCCAAAGTTTTCAGCCTCAGCTCTATCAACCAAAGATTTGTTCTGTTTAATGAGTACATTAAATAGCTGTTTTGGTCCTGCCTATGATTTCCTGGCTGCTAGAAGTGACGAATTTTGTTTGGAACCTGAACTATGGCTTGTAAAACATTATATTTCTCGGTTCTGTTCCATTTACGTGGATAAATACGAAGATCTAGCACCTCATCTTTGGAAAGTTATCGGTGATGAA  ]
[+] EMBL CD187055             [                                                                                                   AACGAGACGAAATCCAGCTACTGTTTAGTA ACTTTAAATTACAAACATCTTTGGATGATGTTCTAAAATTCTTCCAGCCTCTCCCCTGCTAGAAATGTGTGCAGTGGAAGAAAACGTACTCGGTCTGAAACATCTATATGTTTGAATGATAGTACCTCGGAATCACCATCTCCAAAGTTTTCAGCCTCAGCTCTATCAACCAAAGATTTGTTCTGTTTAATGAGTACATTAAATAGCTGTTTTGGTCCTGCCTATGATTTCCTGGCTGCTAGAAGTGACGAATTTTGTTTGGAACCTGAACTATGGCTTGTAAAACATTATATTTCTCGGTTCTGTTCCATTTACGTGGATAAATACGAAGATCTAGCACCTCATCTTTGGAAAGTTATCGGTGATGAAAT]




>consensus_8380#0
GGCTGGTACCTTGGCGTGGTAGACGGGCTTGTGTGTTGCAGTGATCCTGAGGGCTATACC
GACCGAGGTTCAACCATGTCGGGAAGGCTGAAGGTGAGCAACGAGACGAAATCCAGCTAC
TGTTTAGTAACTTTAAATTACAAACATCTTTGGATGATGTTCTAAAATTCTTCCAGCCTC
TCCCCTGCTAGAAATGTGTGCAGTGGAAGAAAACGTACTCGGTCTGAAACATCTATATGT
TTGAATGATAGTACCTCGGAATCACCGTCTCCAAAGTTTTCAGCCTCAGCTCTATCAACC
AAAGATTTGTTCTGTTTAATGAGTACATTAAATAGCTGTTTTGGTCCTGCCTATGATTTC
CTGGCTGCTAGAAGTGACGAATTTTGTTTGGAACCTGAACTATGGCTTGTAAAACATTAT
ATTTCTCGGTTCTGTTCCATTTACGTGGATAAATACGAAGATCTAGCACCTCATCTTTGG
AAAGTTATCGGTGATGAAAT

consensusID : consensus_8380#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence

                              [TTTCATCACCGATAACTTTCCAAAGATGAGGTGCTAGATCTTCGTATTTATCCACGTAAATGGAACAGAACCGAGAAATATAATGTTTTACAAGCTGACGAAATGAAAGTGAAGATAATCATGAGGACACTAAAGAAAACATCAATAAAATCAAAATTGCTGAGCCAATATATACATAAATATAATCTTGGAACAATGAGAAAGTGTTACACTGAAGAAAAGAAGTTTTAGAGGGAACTCCAACTTTTGAACCTCCGTAAGTCCCCAGGCCCAAACAACGTACCCCACTTCCTCCCCACGGATGGAGCCAAACTTCTGGTCAGAGATCTTACTAAATAATTTGGAAAGATTATGGAAGTTAACAGTTCTGTAATCTTGCAATGAAGCGATTGCTGTCCTGCCACTTCTATCAATTAAGGGACGAGTATACTGCGTAGCAGTCCGTCCTGTTTTACTTTACGGCTGTGAAACATGGCCATTAAA]

[+] EMBL CD152928             [TTTCATCACCGATAACTTTCCAAAGATGAGGTGCTAGATCTTCGTATTTATCCACGTAAATGGAACAGAACCGAGAAATATAATGTTTTACAAGCTGACGAAATGAAAGTGAAGATAATCATGAGGACACTAAAGAAAACATCAATAAAATCAAAATTGCTGAGCCAATATATACATAAATATAATCTTGGAACAATGAGAAAGTGTTACACTGAAGAAAAGAAGTTTTAGAGGGAACTCCAACTTTTGAACCTCCGTAAGTCCCCAGGCCCAAACAACGTACCCCACTTCCTCCCCACGGATGGAGCCAAACTTCTGGTCAGAGATCTTACTAAATAATTTGGAAAGATTATGGAAGTTAACAGTTCTGTAATCTTGCAATGAAGCGATTGCTGTCCTGCCACTTCTATCAATTAAGGGACGAGTATACTGCGTAGCAGTCCGTCCTGTTTTACTTTACGGCTGTGAAACATGGCCATTAAA]




>consensus_8380#1
TTTCATCACCGATAACTTTCCAAAGATGAGGTGCTAGATCTTCGTATTTATCCACGTAAA
TGGAACAGAACCGAGAAATATAATGTTTTACAAGCTGACGAAATGAAAGTGAAGATAATC
ATGAGGACACTAAAGAAAACATCAATAAAATCAAAATTGCTGAGCCAATATATACATAAA
TATAATCTTGGAACAATGAGAAAGTGTTACACTGAAGAAAAGAAGTTTTAGAGGGAACTC
CAACTTTTGAACCTCCGTAAGTCCCCAGGCCCAAACAACGTACCCCACTTCCTCCCCACG
GATGGAGCCAAACTTCTGGTCAGAGATCTTACTAAATAATTTGGAAAGATTATGGAAGTT
AACAGTTCTGTAATCTTGCAATGAAGCGATTGCTGTCCTGCCACTTCTATCAATTAAGGG
ACGAGTATACTGCGTAGCAGTCCGTCCTGTTTTACTTTACGGCTGTGAAACATGGCCATT
AAA

consensusID : consensus_8380#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 299
fasta sequence

                              [AACACTGATCTGTACAGTTTGTTAAATATTAGTTAAGAATGTATATAGTATGCACTTGTTCGTAAGACAATTATATAAATGTGATACCTGTTTACATTCAGTGATCGTTGAGCGATCAATGATGCCATTGTTTTGGAGTTGTTTACAATGCTTATATCTATTTTAATTTCTTGATTCCTGATTAATTTGACAGAATTCTTCCAGCCTCTCCCCTGCTAGAAATGTGTGCAGTGGAAGAAAACGTACTCGGTCTGAAACATCTATATGTTTGAATGATAGTACCTCGGAATCACCATCTC]

[+] EMBL CD177805             [AACACTGATCTGTACAGTTTGTTAAATATTAGTTAAGAATGTATATAGTATGCACTTGTTCGTAAGACAATTATATAAATGTGATACCTGTTTACATTCAGTGATCGTTGAGCGATCAATGATGCCATTGTTTTGGAGTTGTTTACAATGCTTATATCTATTTTAATTTCTTGATTCCTGATTAATTTGACAGAATTCTTCCAGCCTCTCCCCTGCTAGAAATGTGTGCAGTGGAAGAAAACGTACTCGGTCTGAAACATCTATATGTTTGAATGATAGTACCTCGGAATCACCATCTC]




>consensus_8380#2
AACACTGATCTGTACAGTTTGTTAAATATTAGTTAAGAATGTATATAGTATGCACTTGTT
CGTAAGACAATTATATAAATGTGATACCTGTTTACATTCAGTGATCGTTGAGCGATCAAT
GATGCCATTGTTTTGGAGTTGTTTACAATGCTTATATCTATTTTAATTTCTTGATTCCTG
ATTAATTTGACAGAATTCTTCCAGCCTCTCCCCTGCTAGAAATGTGTGCAGTGGAAGAAA
ACGTACTCGGTCTGAAACATCTATATGTTTGAATGATAGTACCTCGGAATCACCATCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8380#0      ------GGCTGGTAC--CTTGGCG--TGGTA-GACGGGCTTGTGTGT----TGCAGTGAT 45
consensus_8380#2      AACACTGATCTGTACAGTTTGTTAAATATTA-GTTAAGAATGTATATAGTATGCACTTGT 59
consensus_8380#1      TTTCATCACCGATAACTTTCCAAAGATGAGGTGCTAGATCTTCGTATT-TATCCACGTAA 59
                                  **    *       *     *       *   * *    * **     

consensus_8380#0      CCTGAGGGC---TATACCGAC-CGAGGTTCAACCATGTCGGGAAGGCTGAAGGTGAGCAA 101
consensus_8380#2      TCGTAAGACAATTATATAAATGTGATACCTGTTTACATTCAGTGATCGTTGAGCGATCAA 119
consensus_8380#1      ATGGAACAGAACCG-AGAAATATAATGTTTTACAAGCTGACGAAATGAAAGTGAAGATAA 118
                          *          *   *    *         *  *   *          *     **

consensus_8380#0      CGAGACGAA-ATCCAGCTACTGTTTAGTAACTTTAAAT---TACAAACATCTT------T 151
consensus_8380#2      TGATGCCATTGTTTTGGAGTTGTTTACAATGCTTATATCTATTTTAATTTCTTGATTCCT 179
consensus_8380#1      TCATGAGGACACTAAAGAAAACATCAATAAAATCAAAATT-GCTGAGCCAATATATACAT 177
                        *                    * *  *   * * *        *     *       *

consensus_8380#0      GGATGATGTTCTAAAATTCTTCCAGCCTCTCCCCTGCTAGAAATGTGTGCAGTGGAAGAA 211
consensus_8380#2      GATTAATTTGACAGAATTCTTCCAGCCTCTCCCCTGCTAGAAATGTGTGCAGTGGAAGAA 239
consensus_8380#1      AAATATAATCTTGGAACAATGAGAAAGTGTTACACTGAAGAAA----AGAAGTTTTAGAG 233
                         *    *     **   *   *   * *  *     *****     * ***   *** 

consensus_8380#0      AACGTACTCGGTCTGAAACATCTATATGTTTGAATGATAGTACCTCGGAATCACCGTCTC 271
consensus_8380#2      AACGTACTCGGTCTGAAACATCTATATGTTTGAATGATAGTACCTCGGAATCACCATCTC 299
consensus_8380#1      GGAACTCCAACTTTTGAACCTCCGTAAGTCCCCAGGCCCAAACAACGTACCCCACTTCCT 293
                            *    * *  *** **  ** **    * *     **  ** *  *  * **  

consensus_8380#0      CAAAGTTTTCAGCCTCAGCTCTATCAACCAAAGATTTGTTCTGTTTAATGAGTACATTAA 331
consensus_8380#2      ------------------------------------------------------------
consensus_8380#1      CCCCACGGATGGAGCCAAACTTCTGGTCAGAGATCTTACTAAATAATTTGGAAAGATTAT 353
                                                                                  

consensus_8380#0      ATAGCTGTTTTGGTCCTGCCTATGATTTCCTGGCTGCTAGAAGTG-ACGAATTTTGTTTG 390
consensus_8380#2      ------------------------------------------------------------
consensus_8380#1      GGAAGTTAACAGTTCTGTAATCTTGCAATGAAGCGATTGCTGTCCTGCCACTTCTATCAA 413
                                                                                  

consensus_8380#0      GAACCTGAACTATGGCTTGTAAAACATTATATTTCTCGGTTCTGTTCCATTTACGTGGAT 450
consensus_8380#2      ------------------------------------------------------------
consensus_8380#1      TTAAGGGACGAGTATACTGCGTAGCAGTCCGTCCTGTTTTACTTTACGGCTGTGAAACAT 473
                                                                                  

consensus_8380#0      AAATACGAAGATCTAGCACCTCATCTTTGGAAAGTTATCGGTGATGAAAT 500
consensus_8380#2      --------------------------------------------------
consensus_8380#1      GGCCATTAAA---------------------------------------- 483