cluster # 8381

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8381 cluster # 8381 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8381#0 length = 1052 sequences # 4

consensus_8381#1 length = 579 sequences # 1
consensus_8381#2 length = 341 sequences # 1

consensusID : consensus_8381#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1052
fasta sequence

                              [AATGCGTTTNGATGGGAGATAATCCTGACGTG-GTTGT-CTC-AATAATGTGACATATCANTTATCGGAACTTTCTGCTGAAGAGAAATTTCGGATAGAACACTTGAAGTACCATGAAGATCACAAGGGCCATGAAAAAATGCACCTCGAGATATTTTTGGTTGCATTTGTTAGTTTGCTTTTCTGCCAATTAGTGCTTATGTTCTGGAAACAGCGACACTTCCGCTCGTACCAGCTTGTAACCTTAATTGCTATGTGGTTGGTACCGTTTATATACAGCGTGCTAGCAGAATTTCCAAGATTCATTTTTGTCTGGGTTTTATTTTCACTAACCACTGGAGTTATGGTATACCTAGCCTCTAAGGAACGCATAAGTACAACTACACCAAGACGAGTTTATCGGTGGTTCTTATTTATTCATACCGTTTCCTATGTACTTGGAGTTGGTGGCTATGTTCTTTTAGTGTTAACATTTTTCCAAGTCAATCTGCTCTTTCTTCTGCCTACAAAGGTTTCAGTGGATTTATCTTTATTGGCATTGTTTTATGGTCTTTATTATGGGGTTATTGCACGAGATTTTGCTGAAGTTTGCACAAATAAATTAGCTGCACAAATATCATATCGAGTTCCTCAAGGTATGCCAGTTCGTCGACTTGATCCATCAGTATGTTCAATATGTAAAAGTAATTTAACATCAGATAGTAGTGAAAAGGTTCATCGACTCAATTGTACTCATGTCTTTCACGACTTTTGTATTCGAGGTTGGTGTATTATTGGAAAGAAAGATACTTGTCCATATTGTAATGAAAAAGTCAACTTAAAACAGACATTTACAAATCCATGGGATAAACCACATTTACTATACGGAAATCTATTAGATTGGGTACGGTATTTGGTCGCATGGCAACCTGTAATTCTGGGTGTAGTTCATGTGCTTAACTCCATTTTAGGACTACAATAAACAGTACCGACTCTTACAAAATGCATGTTCTCAGATGTTCCTTCTTACAATTGAAACTTGTAAATCATATGGTGTTTTTTTTTTGTTGTATGAA]

[-] EMBL CD130015             [AATGCGTTTNGATGGGAGATAATCCTGACGTG GTTGT CTCAAATAATGTGACATATCANTTATCGGAACTTTCTGCTGAAGAGAAATTTCGGATAGAACACTTGAAGTACCATGAAGATCACAAGGGCCATGAAAAAATGCACCTCGAGATATTTTTGGTTGCATTTGTTAGTTTGCTTTTCTGCCAATTAGTGCTTATGTTCTGGAAACAGCGACACTTCCGCTCGTACCAGCTTGTAACCTTAATTGCTATGTGGTTGGTACCGTTTATATACAGCGTGCTAGCAGAATTTCCAAGATTCATTTTTGTCTGGGTTTTATTTTCACTAACCACTGGAGTTATGGTATACCTAGCCTCTAAGGAACGCATAAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD082834             [                       CCTGACGTGNGTTGTCCTC AATAATGTTACATATCATTTATCGGAACTTTCTGCTGAAGAGAAATTTCGGATAGAACACTTGAAGTACCATGAAGATCACAAGGGCCATGAAAAAATGCACCTCGAGATGTTTTTGGTTGCATTTGTTAGTTTGCTTTTCTGCCAATTAGTGCTTATGTTCTGGAAACAGCGACACTTCCGCTCGTACCAGCTTGTAACCTTAATTGCTATGTGGTTGGTACCGTTTATATACAGCGTGCTAGCAGAATTTCCAAGATTCATTTTTGTCTGGGTTTTATTTTCACTAACCACTGGAGTTATGGTATACCTAGCCTCTAAGAAACGCATAAGTACAACTACACCAAGACGAGTTTATCGGTGGTTCTTATTTATTCATACCGTTTCCTATGTACTTGGAGTTGGTGGCTATGTTCTTTTAGTGTTAACATTTTTCCAAGTCAATCTGCTCTTTCTTCTGCCTACAAAGGTTTCAGTGGATTTATCTTTATTGGCATTGTTTTATGGTCTTTATTATGGGGTTATTGCACGAGATTNTGCTGAAGTTTGCACAAATAAATTAGCTGCACAAATATCATATCG                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD077229             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TGTTAACATTTTTCCAAGTCAATCTGCTCTTTCTTCTGCCTACAAAGGTTTCAGTGGATTTATCTTTATTGGCATTGTTTTATGGTCTTTATTATGGGGTTATTGCACGAGATTTTGCTGAAGTTTGCACAAATAAATTAGCTGCACAAATATCATATCGAGTTCCTCAAGGTATGCCAGTTCGTCGACTTGATCCATCAGTATGTTCAATATGTAAAAGTAATTTAACATCAGATAGTAGTGAAAAGGTTCATCGACTCAATTGTACTCATGTCTTTCACGACTTTTGTATTCGAGGTTGGTGTATTATTGGAAAGAAAGATACTTGTCCATATTGTAATGAAAAAGTCAACTTAAAACAGACATTTACAAATCCATGGGATAAACCACATTTACTATACGGAAATCTATTAGATTGGGTACGGTATTTGGTCGCATGGCAACCTGTAATTCTGGGTGTAGTTCATGTGCTTAACTCCATTTTAGGACTACAATAAACAGTACCGACTCTTACAAAATGCATGTTCTCAGATGTTCCTTCTTACAATTGAAACTTGTAAATCATATGGTGTTTTTTTTTTGTTGTATGAA]
[-] EMBL CD076557             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TTTTCCAAGTCAATCTGCTCTTTCTTCTGCCTACAAAGGTTTCAGTGGATTTATCTTTATTGGCATTGTTTTATGGTCTTTATTATGGGGTTATTGCACGAGATTTTGCTGAAGTTTGCACAAATAAATTAGCTGCACAAATATCATATCGAGTTCCTCAAGGTATGCCAGTTCGTCGACTTGATCCATCAGTATGTTCAATATGTAAAAGTAATTTAACATCAGATAGTAGTGAAAAGGTTCATCGACTCAATTGTACTCATGTCTTTCACGACTTTTGTATTCGAGGTTGGTGTATTATTGGAAAGAAAGATACTTGTCCATATTGTAATGAAAAAGTCAACTTAAAACAGACATTTACAAATCCATGGGATAAACCACATTTACTATACGGAAATCTATTAGATTGGGTACGGTATTTGGTCGCATGGCAACCTGTAATTCTGGGTGTAGTTCATGTGCTTAACTCCATTTTAGGACTACAATAAACAGTACCGACTCTTACAAAATGCATGTTCTCAGATGTTCCTTCTTACAATTGAAACTTGTAAATCATATGGTGTTTTTTTTTTGTTGTATGAA]




>consensus_8381#0
AATGCGTTTNGATGGGAGATAATCCTGACGTGGTTGTCTCAATAATGTGACATATCANTT
ATCGGAACTTTCTGCTGAAGAGAAATTTCGGATAGAACACTTGAAGTACCATGAAGATCA
CAAGGGCCATGAAAAAATGCACCTCGAGATATTTTTGGTTGCATTTGTTAGTTTGCTTTT
CTGCCAATTAGTGCTTATGTTCTGGAAACAGCGACACTTCCGCTCGTACCAGCTTGTAAC
CTTAATTGCTATGTGGTTGGTACCGTTTATATACAGCGTGCTAGCAGAATTTCCAAGATT
CATTTTTGTCTGGGTTTTATTTTCACTAACCACTGGAGTTATGGTATACCTAGCCTCTAA
GGAACGCATAAGTACAACTACACCAAGACGAGTTTATCGGTGGTTCTTATTTATTCATAC
CGTTTCCTATGTACTTGGAGTTGGTGGCTATGTTCTTTTAGTGTTAACATTTTTCCAAGT
CAATCTGCTCTTTCTTCTGCCTACAAAGGTTTCAGTGGATTTATCTTTATTGGCATTGTT
TTATGGTCTTTATTATGGGGTTATTGCACGAGATTTTGCTGAAGTTTGCACAAATAAATT
AGCTGCACAAATATCATATCGAGTTCCTCAAGGTATGCCAGTTCGTCGACTTGATCCATC
AGTATGTTCAATATGTAAAAGTAATTTAACATCAGATAGTAGTGAAAAGGTTCATCGACT
CAATTGTACTCATGTCTTTCACGACTTTTGTATTCGAGGTTGGTGTATTATTGGAAAGAA
AGATACTTGTCCATATTGTAATGAAAAAGTCAACTTAAAACAGACATTTACAAATCCATG
GGATAAACCACATTTACTATACGGAAATCTATTAGATTGGGTACGGTATTTGGTCGCATG
GCAACCTGTAATTCTGGGTGTAGTTCATGTGCTTAACTCCATTTTAGGACTACAATAAAC
AGTACCGACTCTTACAAAATGCATGTTCTCAGATGTTCCTTCTTACAATTGAAACTTGTA
AATCATATGGTGTTTTTTTTTTGTTGTATGAA

consensusID : consensus_8381#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence

                              [CGAGGCCAAAAATTCGGCACGAGGCAAGATTCATTTTTGTCTGGGTTTTATTTTCACTAACCACTGGAGTTATGGTATACCTAGCCTCTAAGAAACGCATAAGTACAACTACACCAAGACGAGTTTATCGGTGGTTCTTATTTATTCATACCGTTTCCTATGTACTTGGAGTTGGTGGCTATGTTCTTTTAGTGTTAACATTTTTCCAAGTCAATCTGCTCTTTCTTCTGCCTACAAAGGTTTCAGTGGATTTATCTTTATTGGCATTGTTTTATGGTCTTTATTATGGGGTTATTGCACGAGATTTTGCTGAAGTTTGCACAAATAAATTAGCTGCACAAATATCATATCGAGTTCCTCAAGGTATGCCAGTTCGTCGACTTGATCCATCAGTATGTTCAATATGTAAAAGTAATTTAACATCAGATAGTAGTGAAAAGGTTCATCGACTCAATTGTACTCATGTCTTTCACGACTTTTGTATTCGAGGTTGGTGTATTATTGGAAAGAAAGATACTTGTCCATATTGTAATGAAAAAGTCAACTTANAACAGACATTTACAAATCCATGGGGATAAC]

[+] EMBL CD082973             [CGAGGCCAAAAATTCGGCACGAGGCAAGATTCATTTTTGTCTGGGTTTTATTTTCACTAACCACTGGAGTTATGGTATACCTAGCCTCTAAGAAACGCATAAGTACAACTACACCAAGACGAGTTTATCGGTGGTTCTTATTTATTCATACCGTTTCCTATGTACTTGGAGTTGGTGGCTATGTTCTTTTAGTGTTAACATTTTTCCAAGTCAATCTGCTCTTTCTTCTGCCTACAAAGGTTTCAGTGGATTTATCTTTATTGGCATTGTTTTATGGTCTTTATTATGGGGTTATTGCACGAGATTTTGCTGAAGTTTGCACAAATAAATTAGCTGCACAAATATCATATCGAGTTCCTCAAGGTATGCCAGTTCGTCGACTTGATCCATCAGTATGTTCAATATGTAAAAGTAATTTAACATCAGATAGTAGTGAAAAGGTTCATCGACTCAATTGTACTCATGTCTTTCACGACTTTTGTATTCGAGGTTGGTGTATTATTGGAAAGAAAGATACTTGTCCATATTGTAATGAAAAAGTCAACTTANAACAGACATTTACAAATCCATGGGGATAAC]




>consensus_8381#1
CGAGGCCAAAAATTCGGCACGAGGCAAGATTCATTTTTGTCTGGGTTTTATTTTCACTAA
CCACTGGAGTTATGGTATACCTAGCCTCTAAGAAACGCATAAGTACAACTACACCAAGAC
GAGTTTATCGGTGGTTCTTATTTATTCATACCGTTTCCTATGTACTTGGAGTTGGTGGCT
ATGTTCTTTTAGTGTTAACATTTTTCCAAGTCAATCTGCTCTTTCTTCTGCCTACAAAGG
TTTCAGTGGATTTATCTTTATTGGCATTGTTTTATGGTCTTTATTATGGGGTTATTGCAC
GAGATTTTGCTGAAGTTTGCACAAATAAATTAGCTGCACAAATATCATATCGAGTTCCTC
AAGGTATGCCAGTTCGTCGACTTGATCCATCAGTATGTTCAATATGTAAAAGTAATTTAA
CATCAGATAGTAGTGAAAAGGTTCATCGACTCAATTGTACTCATGTCTTTCACGACTTTT
GTATTCGAGGTTGGTGTATTATTGGAAAGAAAGATACTTGTCCATATTGTAATGAAAAAG
TCAACTTANAACAGACATTTACAAATCCATGGGGATAAC

consensusID : consensus_8381#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence

                              [TGGATTTATCTTTATTGGCATTGTTTTATGGTCTTTATTATGGGGTTATTGCACGAGATTTTGCTGAAGTTTGCACAAATAAATTAGCTGCACAAATATCAGTAAGTTACGCAATGTATTTTTAAAAACTCAGTTATACGATACACAGAAATCACCAGCATAAAGCCTGACACAAACGTGGGTCGCCCTAAGTTGTTATACCGCATTAACACGACGAGATAAACAGCGAAAACTCGAACTAATGTGTCAGGTATTATAGTGGATAAACTGAAGGTTGAGAATTCGAGACCCAAAGATAAAATGAAAAGGTGTATATAAAACAATACTGGAACTTATGATCT]

[-] EMBL CD146515             [TGGATTTATCTTTATTGGCATTGTTTTATGGTCTTTATTATGGGGTTATTGCACGAGATTTTGCTGAAGTTTGCACAAATAAATTAGCTGCACAAATATCAGTAAGTTACGCAATGTATTTTTAAAAACTCAGTTATACGATACACAGAAATCACCAGCATAAAGCCTGACACAAACGTGGGTCGCCCTAAGTTGTTATACCGCATTAACACGACGAGATAAACAGCGAAAACTCGAACTAATGTGTCAGGTATTATAGTGGATAAACTGAAGGTTGAGAATTCGAGACCCAAAGATAAAATGAAAAGGTGTATATAAAACAATACTGGAACTTATGATCT]




>consensus_8381#2
TGGATTTATCTTTATTGGCATTGTTTTATGGTCTTTATTATGGGGTTATTGCACGAGATT
TTGCTGAAGTTTGCACAAATAAATTAGCTGCACAAATATCAGTAAGTTACGCAATGTATT
TTTAAAAACTCAGTTATACGATACACAGAAATCACCAGCATAAAGCCTGACACAAACGTG
GGTCGCCCTAAGTTGTTATACCGCATTAACACGACGAGATAAACAGCGAAAACTCGAACT
AATGTGTCAGGTATTATAGTGGATAAACTGAAGGTTGAGAATTCGAGACCCAAAGATAAA
ATGAAAAGGTGTATATAAAACAATACTGGAACTTATGATCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8381#0      AATGCGTTTNGATGGGAGATAATCCTGACGTGGTTGTCTCAATAATGTGACATATCANTT 60
consensus_8381#1      ------------------------------------------------------------
consensus_8381#2      ------------------------------------------------------------
                                                                                  

consensus_8381#0      ATCGGAACTTTCTGCTGAAGAGAAATTTCGGATAGAACACTTGAAGTACCATGAAGATCA 120
consensus_8381#1      ------------------------------------------------------------
consensus_8381#2      ------------------------------------------------------------
                                                                                  

consensus_8381#0      CAAGGGCCATGAAAAAATGCACCTCGAGATATTTTTGGTTGCATTTGTTAGTTTGCTTTT 180
consensus_8381#1      ------------------------------------------------------------
consensus_8381#2      ------------------------------------------------------------
                                                                                  

consensus_8381#0      CTGCCAATTAGTGCTTATGTTCTGGAAACAGCGACACTTCCGCTCGTACCAGCTTGTAAC 240
consensus_8381#1      ------------------------------------------------------------
consensus_8381#2      ------------------------------------------------------------
                                                                                  

consensus_8381#0      CTTAATTGCTATGTGGTTGGTACCGTTTATATACAGCGTGCTAGCAGAATTTCCAAGATT 300
consensus_8381#1      ---------------------------CGAGGCCAAAAATTCGGCACGAGG--CAAGATT 31
consensus_8381#2      ------------------------------------------------------------
                                                                                  

consensus_8381#0      CATTTTTGTCTGGGTTTTATTTTCACTAACCACTGGAGTTATGGTATACCTAGCCTCTAA 360
consensus_8381#1      CATTTTTGTCTGGGTTTTATTTTCACTAACCACTGGAGTTATGGTATACCTAGCCTCTAA 91
consensus_8381#2      ------------------------------------------------------------
                                                                                  

consensus_8381#0      GGAACGCATAAGTACAACTACACCAAGACGAGTTTATCGGTGGTTCTTATTTATTCATAC 420
consensus_8381#1      GAAACGCATAAGTACAACTACACCAAGACGAGTTTATCGGTGGTTCTTATTTATTCATAC 151
consensus_8381#2      ------------------------------------------------------------
                                                                                  

consensus_8381#0      CGTTTCCTATGTACTTGGAGTTGGTGGCTATGTTCTTTTAGTGTTAACATTTTTCCAAGT 480
consensus_8381#1      CGTTTCCTATGTACTTGGAGTTGGTGGCTATGTTCTTTTAGTGTTAACATTTTTCCAAGT 211
consensus_8381#2      ------------------------------------------------------------
                                                                                  

consensus_8381#0      CAATCTGCTCTTTCTTCTGCCTACAAAGGTTTCAGTGGATTTATCTTTATTGGCATTGTT 540
consensus_8381#1      CAATCTGCTCTTTCTTCTGCCTACAAAGGTTTCAGTGGATTTATCTTTATTGGCATTGTT 271
consensus_8381#2      -----------------------------------TGGATTTATCTTTATTGGCATTGTT 25
                                                         *************************

consensus_8381#0      TTATGGTCTTTATTATGGGGTTATTGCACGAGATTTTGCTGAAGTTTGCACAAATAAATT 600
consensus_8381#1      TTATGGTCTTTATTATGGGGTTATTGCACGAGATTTTGCTGAAGTTTGCACAAATAAATT 331
consensus_8381#2      TTATGGTCTTTATTATGGGGTTATTGCACGAGATTTTGCTGAAGTTTGCACAAATAAATT 85
                      ************************************************************

consensus_8381#0      AGCTGCACAAATATCATATCGAGTTCCTCAAGGTATGCC----AGTTCGTCGACTTGATC 656
consensus_8381#1      AGCTGCACAAATATCATATCGAGTTCCTCAAGGTATGCC----AGTTCGTCGACTTGATC 387
consensus_8381#2      AGCTGCACAAATATCAG--TAAGTTACGCAATGTATTTTTAAAAACTCAGTTATACGATA 143
                      ****************     **** * *** ****       *  **    *   *** 

consensus_8381#0      CATCAGTATGTTCAATATGTAAAAGTAATTTAACATCAGATAGTAGTGAAAAGGTTCATC 716
consensus_8381#1      CATCAGTATGTTCAATATGTAAAAGTAATTTAACATCAGATAGTAGTGAAAAGGTTCATC 447
consensus_8381#2      CACAGAAATCACCAGCATA-AAGCCTGACACAAACGTGGGTCGCCCTAAGTTGTTATACC 202
                      **     **   **  **  **   * *   **     * * *   * *   * *  * *

consensus_8381#0      GACTCAATTGTACTCATGTCTTTCACGACTTTTGTATTCGAGGT-TGGTGTATTAT--TG 773
consensus_8381#1      GACTCAATTGTACTCATGTCTTTCACGACTTTTGTATTCGAGGT-TGGTGTATTAT--TG 504
consensus_8381#2      GCATTAAC-ACGACGAGATAAACAGCGAAAACTCGAACTAATGTGTCAGGTATTATAGTG 261
                      *  * **        *  *      ***    *  *    * ** *   *******  **

consensus_8381#0      GAAAGAAAGATACTTGTCCATATTGTAATGAAAAAGTCAACTTAAAACAGACATTTACAA 833
consensus_8381#1      GAAAGAAAGATACTTGTCCATATTGTAATGAAAAAGTCAACTTANAACAGACATTTACAA 564
consensus_8381#2      GATAAACTGAAGGTTGAGAAT-TCGAGACCCAAAGATAAAATGAAA--AGGTGTATATAA 318
                      ** * *  **   ***   ** * *  *   ***  * ** * * *  **   * ** **

consensus_8381#0      ATCCATGGGATAAACCACATTTACTATACGGAAATCTATTAGATTGGGTACGGTATTTGG 893
consensus_8381#1      ATCCATGGGGATAAC--------------------------------------------- 579
consensus_8381#2      AACAATACTGGAACTTATGATCT------------------------------------- 341
                      * * **      *                                               

consensus_8381#0      TCGCATGGCAACCTGTAATTCTGGGTGTAGTTCATGTGCTTAACTCCATTTTAGGACTAC 953
consensus_8381#1      ------------------------------------------------------------
consensus_8381#2      ------------------------------------------------------------
                                                                                  

consensus_8381#0      AATAAACAGTACCGACTCTTACAAAATGCATGTTCTCAGATGTTCCTTCTTACAATTGAA 1013
consensus_8381#1      ------------------------------------------------------------
consensus_8381#2      ------------------------------------------------------------
                                                                                  

consensus_8381#0      ACTTGTAAATCATATGGTGTTTTTTTTTTGTTGTATGAA 1052
consensus_8381#1      ---------------------------------------
consensus_8381#2      ---------------------------------------