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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8382#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 950 fasta sequence
[TAATTCGGCACGACGGNCAAACCTAATAGAGAGATAGCAGGAAAAACAAATGAATGTGATTGGAGTTCAGTTTTCTCTCAGATTGCAGAGAGCCATTTAGATTCAGAACAAAATCAGCTTAATCAGATCGATCTGACTGACTTTAATGCTTTTGGTACTCCTAAAAAAATCTCAGATACTCAATTGCCTCCAGTTCTCCAGGATTTTGAGCCTGATCTGCATGCTGAACTGTCACAAAATGACCAAGAAAAAATTAAAACCATTGGAACATTAGAACAACGTACTAATTCAGGATCAGGGACATTAATCAAGCCATCTAACAAGACGGAAGATCGATATAATACTAACTTAATAGTAGAACCCGTTTCTAAGGAGAAGATCCTAAACAAAAGTATCATACAAAGTGATGTTGGGAATGATTCGGAGTTATTTGTCAGCAGTTCACCTACAATTTTAAACCATATGAAATCAGATACAAAACAAACTAAATCAGAAGTAAAAGCCATTGATTTATGTGTGCACAAAGCTGGCGAATCAAACGAGCCTGTCATAAATGAAGTCAGTCAAAATAAACCGACCCCAGAATCTCAGTCATCAGCAAGTCTAGTAAACCCCGAAGTCCTCTATGATAAAAATGAATC-TCCCATTGTTAGTAATAACCCTAAACAAACAGACATC-ACTTCCTCTAAAGATAAAGCAAAAAAGCATAGGAACCGACATAAGAAAAAGAAGAAAACTGCTTAACCTCATAC-ATACCATTCTATAGTCTCAATCAACTTTAATTTCATTCTATTTATTTACAGTGTGATTTTAACTTTGAAAATGTATTACTTGCCTCTTCTTATCGCTT-AAATAATGTGAAATGA-TTATCAATCCACAAGC-ACATATATGCAAGTGTGTAGTGATATATCTTATTACTATAAGCTTTTGC-TATCAC-AAACTGTATAAAA]
[+] EMBL CD081689 [TAATTCGGCACGACGGNCAAACCTAATAGAGAGATAGCAGGAAAAACAAATGAATGTGATTGGAGTTCAGTTTTCTCTCAGATTGCAGAGAGCCATTTAGATTCAGAACAAAATCAGCTTAATCAGATCGATCTGACTGACTTTAATGCTTTTGGTACTCCTAAAAAAATCTCAGATACTCAATTGCCTCCAGTTCTCCAGGATTTTGAGCCTGATCTGCATGCTGAACTGTCACAAAATGACCAAGAAAAAATTAAAACCATTGGAACATTAGAACAACGTACTAATTCAGGATCAGGGACATTAATCAAGCCATCTAACAAGACGGAAGATCGATATAATACTAACTTAATAGTAGAACCCGTTTCTAAGGAGAAGATCCTAAACAAAAGTATCATACAAAGTGATGTTGGGAATGATTCGGAGTTATTTGTCAGCAGTTCACCTACAATTTTAAACCATATGAAATCAGATACAAAACAAACTAAATCAGAAGTAAAAGCCATTGATTTATGTGTGCACAAAGCTGGCGAATCAAACGAGCCTGTCATAAATGAAGTCAGTCAAAATAAACCGACCCCAGAATCTCAGTCATCAGCAAGTCTAGTAAACCCCGAAGTCCTCTATGATAAAAATGAATC TCCCATTGTTAGTAATAACCCTAAACAAACAGACATC ACTTCCTCTAAAGATAAAGCAAAAAAGCATAGGAACCGACATAAGAAAAAGAAGAAAACTGCTTAACCTCATAC ATACCATTCTATAGTCTCAATCAACTNTAATTTCATTCTATTTATTTACAGTGTGATTTTAACTNTGAAAATGTATTACTTGCCTCTTCTTATCGCTT AAATAATGTGAAATGA TTATCAATCCACAAGC ACATATATGCAAGTGTGTAGTGATATATCTTATTACTATAAGCTTTTGC TATCAC AAACTGTATAA ]
[-] EMBL CD138760 [ TATAATACTAACTTAATAGTAGAACCCGTTTCTAAGGAGAAGATCCTAAACAAAAGTATCATACAAAGTGATGTTGGGAATGATTCGGAGTTATTTGTCAGCAGTTCACCTACAATTTTAAACCATATGAAATCAGATACAAAACAAACTAAATCAGAAGTAAAAGCCATTGATTTATGTGTGCACAAAGCTGGCGAATCAAACGAGCCTGTCATAAATGAAGTCAGTCAAAATAAACCGACCCCAGAATCTCAGTCATCAGCAAGTCTAGTAAACCCCGAAGTCCTCTATGATAAAAATGAATC TCCCATTGTTAGTAATAACCCTAAACAAACAGACATC ACTTCCTCTAAAGATAAAGCAAAAAAGCATAGGAACCGACATAAGAAAAAGAAGAAAACTGCTTAACCTCATAC ATAC ]
[+] EMBL AW146474 [ GGCGAATCAAACGAGCCTGTCATAAATGAAGTCAGTCAAAATAAACCGACCCCAGAATCTCAGTCATCAGCAAGTCTAGTAAACCCCGAAGTCCTCTATGATAAAAATGAATC TCCCATTGTTAGTAATAACCCTAAACAAACAGACATCAACTTCCTCTAAAGATAAAGCAAAAAAGCATAGGAACCGCCATAGG AAAGGAGGAAACTGCTTAACCTCATACTATACCATTCTATAGTCTCAATCAACTTTAATTTCAATCTATTTATTTACAGTGTGATTTTAACTTTGAAAATGTTTTACTTGCCTCTTCTTATC ]
[-] EMBL AA999593 [ ATAAAAATGAATCTTCCCATTGTTAGTAATAACCCTAAACAAACAGACATC ACTTCCTCTAAAGATAAAGCAAAAAAGCATAGGAACCGACATAAGAAAAAGAAGAAAACTGCTTAACCTCATAC ATACCATTCTATAGTCTCAATCAACTTTAATTTCATTCTATTTATTTACAGTGTGATTTTAACTTTGAAAATGTATTACTTGCCTCTTCTTATCGCTTAAAATAATGTG AATGATTTATCAATCCACAAGCAACATATATGCAAGTGTGTAGTGATATATCTTATTACTATAAGCTTTTGCTTATCACAAAACTGTATAAAA]
consensusID : consensus_8382#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 799 fasta sequence
[TTTCATAATACTCAAAGGTATAAAAGTGAAAGTACATCCAACAAAAATAGCTCGGAATGGGTTTCTACTTTGGCCAAGTTAGATCAACCACAGTTTGAAGCTGAAATGAGTCAGTTTTTTGATGGACATTCAACAACAGTAAGAACAGAACACATGACAACTAGTAAGTGCACTTCGAAAAGCAGTCAACAACCTGTTGTCTCTCAGTCTAATGAATTATCTTACCATGGACTTTTTGTGGGTGAAGGATGGCCTAGTCTCAAGCCCAATAAGAAAGGAGAGATAATACATAGTTCTGGAAAATCCGAAACTAGAAATATTGAGTTGGAAAAAATATGGCAAAGTGAGAAGGACAAACCTAATTAAGAGATAGCAGGAAAAACAAATGAATGTGATTGGAGTTCAGTTTTCTCTCAGATTGTAGAGAGCCATTTAGATTCAGAACAAAATCAGCTTAATCAGATCGATCTGACTGACTTTAATGCTTTTGGTACTCCTAAAAAAAATCTCAGATACTCAATTGCCTCCAGTTCTCCAGGATTTTGAGCCTGATCTGCATGCTGAACTGTCACAAAATGACCAAGAAAAAATTAAAACCATTGGAACATTAGAACAACGTACTAATTCAGGATCAGGGACATTAATCAAGCCATCTAACAAGACGGAAGATCGATATAATACTAACTTAATAGTAGAACCCGTTTCTAAGGAGAAGATCCTAAACAAAAGTATCATACAAAGTGATGTTGGGAATGATTCGGAGTTATTTGTCAGGGGCCGATATCGAAGCTACAGAAAC]
[+] EMBL CD115024 [TTTCATAATACTCAAAGGTATAAAAGTGAAAGTACATCCAACAAAAATAGCTCGGAATGGGTTTCTACTTTGGCCAAGTTAGATCAACCACAGTTTGAAGCTGAAATGAGTCAGTTTTTTGATGGACATTCAACAACAGTAAGAACAGAACACATGACAACTAGTAAGTGCACTTCGAAAAGCAGTCAACAACCTGTTGTCTCTCAGTCTAATGAATTATCTTACCATGGACTTTTTGTGGGTGAAGGATGGCCTAGTCTCAAGCCCAATAAGAAAGGAGAGATAATACATAGTTCTGGAAAATCCGAAACTAGAAATATTGAGTTGGAAAAAATATGGCAAAGTGAGAAGGACAAACCTAATTAAGAGATAGCAGGAAAAACAAATGAATGTGATTGGAGTTCAGTTTTCTCTCAGATTGTAGAGAGCCATTTAGATTCAGAACAAA ]
[+] EMBL CD138610 [ GGAGAGATAATACATAGTTCTGGAAAATCCGAAACTAGAAATATTGAGTTGGAAAAAATATGGCAAAGTGAGAAGGACAAACCTAATAAAGAGATAGCAGGAAAAACAAATGAATGTGATTGGAGTTCAGTTTTCTCTCAGATTGCAGAGAGCCATTTAGATTCAGAACAAAATCAGCTTAATCAGATCGATCTGACTGACTTTAATGCTTTTGGTACTCCTAAAAAAAATCTCAGATACTCAATTGCCTCCAGTTCTCCAGGATTTTGAGCCTGATCTGCATGCTGAACTGTCACAAAATGACCAAGAAAAAATTAAAACCATTGGAACATTAGAACAACGTACTAATTCAGGATCAGGGACATTAATCAAGCCATCTAACAAGACGGAAGATCGATATAATACTAACTTAATAGTAGAACCCGTTTCTAAGGAGAAGATCCTAAACAAAAGTATCATACAAAGTGATGTTGGGAATGATTCGGAGTTATTTGTCAGGGGCCGATATCGAAGCTACAGAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8382#0 ------------------------------------------------------------
consensus_8382#1 TTTCATAATACTCAAAGGTATAAAAGTGAAAGTACATCCAACAAAAATAGCTCGGAATGG 60
consensus_8382#0 ------------------------------------------------------------
consensus_8382#1 GTTTCTACTTTGGCCAAGTTAGATCAACCACAGTTTGAAGCTGAAATGAGTCAGTTTTTT 120
consensus_8382#0 ------------------------------------------------------------
consensus_8382#1 GATGGACATTCAACAACAGTAAGAACAGAACACATGACAACTAGTAAGTGCACTTCGAAA 180
consensus_8382#0 ------------------------------------------------------------
consensus_8382#1 AGCAGTCAACAACCTGTTGTCTCTCAGTCTAATGAATTATCTTACCATGGACTTTTTGTG 240
consensus_8382#0 ------------------------------------------------------------
consensus_8382#1 GGTGAAGGATGGCCTAGTCTCAAGCCCAATAAGAAAGGAGAGATAATACATAGTTCTGGA 300
consensus_8382#0 ------------------------------------TAATTCGGCACGACGGNCAAACCT 24
consensus_8382#1 AAATCCGAAACTAGAAATATTGAGTTGGAAAAAATATGGCAAAGTGAGAAGGACAAACCT 360
* * ** ** *******
consensus_8382#0 AATAGAGAGATAGCAGGAAAAACAAATGAATGTGATTGGAGTTCAGTTTTCTCTCAGATT 84
consensus_8382#1 AATTAAGAGATAGCAGGAAAAACAAATGAATGTGATTGGAGTTCAGTTTTCTCTCAGATT 420
*** *******************************************************
consensus_8382#0 GCAGAGAGCCATTTAGATTCAGAACAAAATCAGCTTAATCAGATCGATCTGACTGACTTT 144
consensus_8382#1 GTAGAGAGCCATTTAGATTCAGAACAAAATCAGCTTAATCAGATCGATCTGACTGACTTT 480
* **********************************************************
consensus_8382#0 AATGCTTTTGGTACTCCTAAAAAAA-TCTCAGATACTCAATTGCCTCCAGTTCTCCAGGA 203
consensus_8382#1 AATGCTTTTGGTACTCCTAAAAAAAATCTCAGATACTCAATTGCCTCCAGTTCTCCAGGA 540
************************* **********************************
consensus_8382#0 TTTTGAGCCTGATCTGCATGCTGAACTGTCACAAAATGACCAAGAAAAAATTAAAACCAT 263
consensus_8382#1 TTTTGAGCCTGATCTGCATGCTGAACTGTCACAAAATGACCAAGAAAAAATTAAAACCAT 600
************************************************************
consensus_8382#0 TGGAACATTAGAACAACGTACTAATTCAGGATCAGGGACATTAATCAAGCCATCTAACAA 323
consensus_8382#1 TGGAACATTAGAACAACGTACTAATTCAGGATCAGGGACATTAATCAAGCCATCTAACAA 660
************************************************************
consensus_8382#0 GACGGAAGATCGATATAATACTAACTTAATAGTAGAACCCGTTTCTAAGGAGAAGATCCT 383
consensus_8382#1 GACGGAAGATCGATATAATACTAACTTAATAGTAGAACCCGTTTCTAAGGAGAAGATCCT 720
************************************************************
consensus_8382#0 AAACAAAAGTATCATACAAAGTGATGTTGGGAATGATTCGGAGTTATTTGTCAGCAGTTC 443
consensus_8382#1 AAACAAAAGTATCATACAAAGTGATGTTGGGAATGATTCGGAGTTATTTGTCAGGGGCCG 780
****************************************************** *
consensus_8382#0 ACCTACAATTTTAAACCATATGAAATCAGATACAAAACAAACTAAATCAGAAGTAAAAGC 503
consensus_8382#1 ATATCGAAGCTACAGAAAC----------------------------------------- 799
* * ** * * *
consensus_8382#0 CATTGATTTATGTGTGCACAAAGCTGGCGAATCAAACGAGCCTGTCATAAATGAAGTCAG 563
consensus_8382#1 ------------------------------------------------------------
consensus_8382#0 TCAAAATAAACCGACCCCAGAATCTCAGTCATCAGCAAGTCTAGTAAACCCCGAAGTCCT 623
consensus_8382#1 ------------------------------------------------------------
consensus_8382#0 CTATGATAAAAATGAATCTCCCATTGTTAGTAATAACCCTAAACAAACAGACATCACTTC 683
consensus_8382#1 ------------------------------------------------------------
consensus_8382#0 CTCTAAAGATAAAGCAAAAAAGCATAGGAACCGACATAAGAAAAAGAAGAAAACTGCTTA 743
consensus_8382#1 ------------------------------------------------------------
consensus_8382#0 ACCTCATACATACCATTCTATAGTCTCAATCAACTTTAATTTCATTCTATTTATTTACAG 803
consensus_8382#1 ------------------------------------------------------------
consensus_8382#0 TGTGATTTTAACTTTGAAAATGTATTACTTGCCTCTTCTTATCGCTTAAATAATGTGAAA 863
consensus_8382#1 ------------------------------------------------------------
consensus_8382#0 TGATTATCAATCCACAAGCACATATATGCAAGTGTGTAGTGATATATCTTATTACTATAA 923
consensus_8382#1 ------------------------------------------------------------
consensus_8382#0 GCTTTTGCTATCACAAACTGTATAAAA 950
consensus_8382#1 ---------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||