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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8389#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1084 fasta sequence
[GCCATTAATTCGGCACCAGGCGGCCACTTATGATTGTGTACAACATTTCCTTAGTTCTGCTTTCGAGTTGGCTAGTATACGAATTCGCCGTTTCAGGATGGCTTACAGGATATTCTCTTGGTTGTCAAAGTGTTGATTATTCGAGAAGACCAATTGCTATGCGTATGGCCTCTACTTGCTGGTTTTTCTTCTTTTCCAAAATAATTGAATTATTTGATACCGTATTGTTTATCCTTCGAAAGAAATTTGAGTTAGTTAGCTTTCTTCATGTTTTTCATCATGCAATCATGCCTATTTCATGGTGGTACGGTGTAAAGTATGTCCCAGGTGGTCTAGGAACTTTTCATGCATTTTTAAATTGTATCGTTCACGCCTTTATGTATACTTACTATGGTTTGGCCTCAGCTGGACCTCGTTTTCAAAAGTATATATGGTGGAAAAAATACTTAACTGGAGCTCAAATAACCCAATTCATCATTGTTACTTTTCACTCAACATATACATTGACTATTACCGATTGTAATTACCCAAGAGTTTTCAATTATTGGATCTTGGTATCAGCATTGGTTTTTCTTATTTTATTTTCCAAATTCTATTACGAAGCCTACAAAAAACCAGTTCCTTTGGTAAACGGATTAACAGTTGATGGTAAATACGACAAGAAAACTCATTAAATTACCTTGTCAGTGTTTGTTTTTCCAACATTTGATAGAACTCAACAATTCCCTAGTGATGATGACAATCGTTATAGTTGCATAGATAGGAATCTGTTGTTTTCACCAGTTCATTTTTCATGCCTGTTTGCCAAGATAAACGAATTCCTTCTTCATGATCTATTCCGAAATACCTTGTATCACCTT-CTTTTACCGTTTTGAATGTAGGATTTTATTTTGTGAAATATACATCATTCATCTTATGATTTTATATACGCACACACACAAATCCATACAAATGATTATACATCCATCTACA-TGTTTTTGTTACGAA-CGTTCTGTTTTAATTGTATAGTAACATT-NTT-TTTCATGGTGAATTGATAATGG-TTATTTGATAATTTATTTTATTACATCAAATAAATTATTATAAT]
[+] EMBL CD081812 [GCCATTAATTCGGCACCAGGCGGCCACTTATGATTGTGTACAACATTTCCTTAGTTCTGCTTTCGAGTTGGCTAGTATACGAATTCGCCGTTTCAGGATGGCTTACAGGATATTCTCTTGGTTGTCAAAGTGTTGATTATTCGAGAAGACCAATTGCTATGCGTATGGCCTCTACTTGCTGGTTTTTCTTCTTTTCCAAAATAATTGAATTATTTGATACCGTATTGTTTATCCTTCGAAAGAAATTTGAGTTAGTTAGCTTTCTTCATGTTTTTCATCATGCAATCATGCCTATTTCATGGTGGTACGGTGTAAAGTATGTCCCAGGTGGTCTAGGAACTTTTCATGCATTTTTAAATTGTATCGTTCACGCCTTTATGTATACTTACTATGGTTTGGCCTCAGCTGGACCTCGTTTTCAAAAGTATATATGGTGGAAAAAATACTTAACTGGAGCTCAAATAACCCAATTCATCATTGTTACTTTTCACTCAACATATACATTGACTATTACCGATTGTAATTACCCAAGAGTTTTCAATTATTGGATCTTGGTATCAGCATTGGTTTTTCTTATTTTATTTTCCAAATTCTATTACGAAGCCTACAAAAAACCAGTTCCTTTGGTAAACGGATTAACAGTTGATGGTAAATACGACAAGAAAACTCATTAAATTACCTTGTCAGTGTTTGTTTTTCCAACATCTGATAGAACTCAACAATTCCCTAGTGATGATGACAATCGTTATAGTTGCATAGATAGGAATCTGTTGTTTTCACCAGTTCATTTTTCATGCCTGTTTGCCAAGATAAACGAATTCCTTCTTCATGATCTATTCCGAAATACCTTGTATCACCTTNCTTTTACCG TTTGAATGTANGATTCTATTNTGTG AATATACATCATTCATCTTATGATTTTATATACGCACACACACCAATCCATACCAATGATTATACATCCATCTACANTG TTTTGTTACGAACCGTTCTG TCTAA TGTATAGT ACATT NGT TTTCATGGNGAA TGAT ATGGNNTA TTGATAA TTA TTTATTAC TC AATAAATat ]
[-] EMBL CD160199 [ AAAGTGTTGATTATTCGAGAAGACCAATTGCTATGCGTATGGCCTCTACTTGCTGGTTTTTCTTCTTTTCCGAAATAATTGAATTATTTGATACCGTATTGTTTATCCTTCGAAAGAAATTTGAGTTAGTTAGCTTTCTTCATGTTTTTCATCATGCAATCATGCCTATTTCATGGTGGTACGGTGTAAAGTATGTCCCAGGTGGTCTAGGAACTTTTCATGCATTTTTAAATTGTATCGTTCACGCCTTTATGTATACTTACTATGGTTTGGCCTCAGCTGGACCTCGTTTTCAAAAGTATATATGGTGGAAAAAATACTTAACTGGAGCTCAAATAACCCAATTCATCATTGTTACTTTTCACTCAACATATACATTGACTATTACCGATTGTAATTACCCAAGAGTTTTCAATTATTGGATCTTGGTATCAGCATTGGTTTTTCTTATTTTATTTTCCAAATT ]
[-] EMBL CD075543 [ CTATTTCATGGTGGTACGGTGTAAAGTATGTCCCAGGTGGTCTAGGAACTTTTCATGCATTTTTAAATTGTATCGTTCACGCCTTTATGTATACTTACTATGGTTTGGCCTCAGCTGGACCTCGTTTTCAAAAGTATATATGGTGGAAAAAATACTTAACTGGAGCTCAAATAACCCAATTCATCATTGTTACTTTTCACTCAACATATACATTGACTATTACCGATTGTAATTACCCAAGAGTTTTCAATTATTGGATCTTGGTATCAGCATTGGTTTTTCTTATTTTATTTTCCAAATTTTATTACGAAGCCTACAAAAAACCAGTTCCTTTGGTAAACGGATTAACAGTTGATGGTAAATACGACAAGAAAACTCATTAAATTACCTTGTCAGTGTTTGTTTTTCCAACATTTGATAGAACTCAACAATTCCCTAGTGATGATGACAATCGTTATAGTTGCATAGATAGGAATCTGTTGTTTTCACCAGTTCATTTTTCATGCCTGTTTGCCAAGATAAACGAATTCCTTTTTCATGATTTATTCCGAAATACCTTGTATCACCTT TTTTTACCGTTTTGAATGTAGGATTTTATTTTGTGAAATATACATCATTCATTTTATGATTTTATATACGCACACACACAAATCCATACAAATGATTATACATCCATTTACA TGTTTTTGTTACGAA CGTTTTGTTTTAATTGTATAGTAACATTGTTT TTTCATGGTGAATTGATAATGG TTATTTGATAATTTATTTTATTACATCAAATAAGTTATT ]
[-] EMBL CD073617 [ ATTACCGATTGTAATTACCCAAGAGTTTTCAATTATTGGATCTTGGTATCAGCATTGGTTTTTCTTATTTTATTTTCCAAATTCTATTACGAAGCCTACAAAAAACCAGTTCCTTTGGTAAACGGATTAACAGTTGATGGTAAATACGACAAGAAAACTCATTAAATTACCTTGTCAGTGTTTGTTTTTCCAACATTTGATAGAACTCAACAATTCCCTAGTGATGATGACAATCGTTATAGTTGCATAGATAGGAATCTGTTGTTTTCACCAGTTCATTTTTCATGCCTGTTTGCCAAGATAAACGAATTCCTTCTTCATGATCTATTCCGAAATACCTTGTATCACCTT CTTTTACCGTTTTGAATGTAGGATTTTATTTTGTGAAATATACATCATTCATCTTATGATTTTATATACGCACACACACAAATCCATACAAATGATTATACATCCATCTACA TGTTTTTGTTACGAA CGTTCTGTTTTAATTGTATAGTAACATT GTTCTTTCATGGTGAATTGATAATGG TTATTTGATAATTTATTTTATTACATCAAATAAATTATTATAAT]
consensusID : consensus_8389#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 904 fasta sequence
[CTCGCAGGCCAAAATTCGGCACGAGGGGTTTTTCTTCTTTTCCAAATAATTGAATTATTTGATACCGTATTGTTTATCCTTCGAAAGAAATTTGAGTTAGTTAGCTTTCTTCATGTTTTTCATCATGCAATCATGCCTATTTCATGGTGGTACGGTGTAAAGTATGTCCCAGGTGGTCTAGGAACTTTTCATGCATTTTTAAATTGTATCGTTCACGCCTTTATGTATACTTACTATGGTTTGGCCTCAGCTGGACCTCGTTTTCAAAAGTATATATGGTGGAAAAAATACTTAACTGGAGCTCAAATAACCCAATTCATCATTGTTACTTTTCACTCAACATATACATTGACTATTACCGATTGTAATTACCCAAGAGTTTTCAATTATTGGATCTTGGTATCAGCATTGGTTTTTCTTATTTTATTTTCCAAATTCTATTACGAAGCCTACAAAAAACCAGTTCCTTTGGTAAACGGATTAACAGTTGATGGTAAATACGACAAGAAAACTCATTAAATTACCTTGTCAGTGTTTGTTTTTCCAACATCTGATAGAACTCAACAATTCCCTAGTGATGATGACAATCGTTATAGTTGCATAGATATGAATCTGTTGTGTTCAACAAGTCATTTTTCATGCCTGTTTTGCCAGATAAACGAATTCCTTCTCATGATCTATTNCGAAATACCTGNATCACCTTCTTTTACCGTTTTGAATGTAGGATTCTATTTTGTGAAATTACATCATTCATCTTATGATTTTATATACCCCACACCCAATCCTACAAGGATTATACCTCATTTACCTGTTTTGTTACAACAGTTTGTCTAATGGATAAAAACATTGTTTTTTTTGGGAAATGAAAAGGGTTTTGGAAATTTTTTTTTTCCTCAAAAATTTT]
[+] EMBL CD080122 [CTCGCAGGCCAAAATTCGGCACGAGGGGTTTTTCTTCTTTTCCAAATAATTGAATTATTTGATACCGTATTGTTTATCCTTCGAAAGAAATTTGAGTTAGTTAGCTTTCTTCATGTTTTTCATCATGCAATCATGCCTATTTCATGGTGGTACGGTGTAAAGTATGTCCCAGGTGGTCTAGGAACTTTTCATGCATTTTTAAATTGTATCGTTCACGCCTTTATGTATACTTACTATGGTTTGGCCTCAGCTGGACCTCGTTTTCAAAAGTATATATGGTGGAAAAAATACTTAACTGGAGCTCAAATAACCCAATTCATCATTGTTACTTTTCACTCAACATATACATTGACTATTACCGATTGTAATTACCCAAGAGTTTTCAATTATTGGATCTTGGTATCAGCATTGGTTTTTCTTATTTTATTTTCCAAATTCTATTACGAAGCCTACAAAAAACCAGTTCCTTTGGTAAACGGATTAACAGTTGATGGTAAATACGACAAGAAAACTCATTAAATTACCTTGTCAGTGTTTGTTTTTCCAACATCTGATAGAACTCAACAATTCCCTAGTGATGATGACAATCGTTATAGTTGCATAGATATGAATCTGTTGTGTTCAACAAGTCATTTTTCATGCCTGTTTTGCCAGATAAACGAATTCCTTCTCATGATCTATTNCGAAATACCTGNATCACCTTCTTTTACCGTTTTGAATGTAGGATTCTATTTTGTGAAATTACATCATTCATCTTATGATTTTATATACCCCACACCCAATCCTACAAGGATTATACCTCATTTACCTGTTTTGTTACAACAGTTTGTCTAATGGATAAAAACATTGTTTTTTTTGGGAAATGAAAAGGGTTTTGGAAATTTTTTTTTTCCTCAAAAATTTT]
consensusID : consensus_8389#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 841 fasta sequence
[GAGGCCAGAATTCGGCACGAGGGGCTTTCTTCATGTTTTTCATCATGCAATCATGCCTATTTCATGGTGGTACGGTGTAAAGTATGTCCCAGGTGGTCTAGGAACTTTTCATGCATTTTTAAATTGTATCGTTCACGCCTTTATGTATACTTACTATGGTTGGCCTCAGCTGGACCTCGTTTTCAAAAGTATATATGGTGGAAAAAATACTTAACTGGAGCTCAAATAACCCAATTCATCATTGTTACTTTTCACTCAACATATACATTGACTATTACCGATTGTAATTACCCAAGAGTTTTCAATTATTGGATCTTGGTATCAGCATTGGTTTTTCTTATTTTATTTTCCAAATTCTATTACGAAGCCTACAAAAAACCAGTTCCTTTGGTAAACGGATTAACAGTTGATGGTAAATACGACAAGAAAACTCATTAAATTACCTTGTCAGTGTTTGTTTTTCCAACATCTGATAGAACTCAACAATTCCCTAGTGATGATGACAATCGTTATAGTTGCATAGATAGGAATCTGTTGTTTTCACCAGTTCATTTTTCATGCCTGTTTGCCAAGATAAACGAATTCCTTCTTCATGATCTATTCCGAAATACCTTGTATCACCTTCTTTTACCGTTNTGAATGTAGGATTCTATTNTGTGNAATATACATCATTCATCTTATGATTNTATATACGCACACACANCAATCCATACAAATGATTATACATCCATCTACATGTTTTTGTTACGAAACGTCTGNTCTATTGTATAGAANCATTGTTCTTTCATGGNGAATTGATATGGGTATTTGATANTTATTTTATACATCAATAAATTTTATA]
[+] EMBL CD079340 [GAGGCCAGAATTCGGCACGAGGGGCTTTCTTCATGTTTTTCATCATGCAATCATGCCTATTTCATGGTGGTACGGTGTAAAGTATGTCCCAGGTGGTCTAGGAACTTTTCATGCATTTTTAAATTGTATCGTTCACGCCTTTATGTATACTTACTATGGTTGGCCTCAGCTGGACCTCGTTTTCAAAAGTATATATGGTGGAAAAAATACTTAACTGGAGCTCAAATAACCCAATTCATCATTGTTACTTTTCACTCAACATATACATTGACTATTACCGATTGTAATTACCCAAGAGTTTTCAATTATTGGATCTTGGTATCAGCATTGGTTTTTCTTATTTTATTTTCCAAATTCTATTACGAAGCCTACAAAAAACCAGTTCCTTTGGTAAACGGATTAACAGTTGATGGTAAATACGACAAGAAAACTCATTAAATTACCTTGTCAGTGTTTGTTTTTCCAACATCTGATAGAACTCAACAATTCCCTAGTGATGATGACAATCGTTATAGTTGCATAGATAGGAATCTGTTGTTTTCACCAGTTCATTTTTCATGCCTGTTTGCCAAGATAAACGAATTCCTTCTTCATGATCTATTCCGAAATACCTTGTATCACCTTCTTTTACCGTTNTGAATGTAGGATTCTATTNTGTGNAATATACATCATTCATCTTATGATTNTATATACGCACACACANCAATCCATACAAATGATTATACATCCATCTACATGTTTTTGTTACGAAACGTCTGNTCTATTGTATAGAANCATTGTTCTTTCATGGNGAATTGATATGGGTATTTGATANTTATTTTATACATCAATAAATTTTATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8389#0 GCCATTAATTCGGCACCAGGCGGCCACTTATGATTGTGTACAACATTTCCTTAGTTCTGC 60
consensus_8389#2 ------------------------------------------------------------
consensus_8389#1 ------------------------------------------------------------
consensus_8389#0 TTTCGAGTTGGCTAGTATACGAATTCGCCGTTTCAGGATGGCTTACAGGATATTCTCTTG 120
consensus_8389#2 ------------------------------------------------------------
consensus_8389#1 ------------------------------------------------------------
consensus_8389#0 GTTGTCAAAGTGTTGATTATTCGAGAAGACCAATTGCTATGCGTATGGCCTCTACTTGCT 180
consensus_8389#2 ------------------------------------------------------------
consensus_8389#1 -----------------------------------CTCGCAGGCCAAAATTCGGCACGAG 25
consensus_8389#0 GGTTTTTCTTCTTTTCCAAAATAATTGAATTATTTGATACCGTATTGTTTATCCTTCGAA 240
consensus_8389#2 -------------------------------------------------------GAGGC 5
consensus_8389#1 GGGTTTTTCTTCTTTTCCAAATAATTGAATTATTTGATACCGTATTGTTTATCCTTCGAA 85
*
consensus_8389#0 AGAAATTTGAGTTAGTTAGCTTTCTTCATGTTTTTCATCATGCAATCATGCCTATTTCAT 300
consensus_8389#2 CAGAATTCGGCACGAGGGGCTTTCTTCATGTTTTTCATCATGCAATCATGCCTATTTCAT 65
consensus_8389#1 AGAAATTTGAGTTAGTTAGCTTTCTTCATGTTTTTCATCATGCAATCATGCCTATTTCAT 145
**** * ******************************************
consensus_8389#0 GGTGGTACGGTGTAAAGTATGTCCCAGGTGGTCTAGGAACTTTTCATGCATTTTTAAATT 360
consensus_8389#2 GGTGGTACGGTGTAAAGTATGTCCCAGGTGGTCTAGGAACTTTTCATGCATTTTTAAATT 125
consensus_8389#1 GGTGGTACGGTGTAAAGTATGTCCCAGGTGGTCTAGGAACTTTTCATGCATTTTTAAATT 205
************************************************************
consensus_8389#0 GTATCGTTCACGCCTTTATGTATACTTACTATGGTTTGGCCTCAGCTGGACCTCGTTTTC 420
consensus_8389#2 GTATCGTTCACGCCTTTATGTATACTTACTATGGTT-GGCCTCAGCTGGACCTCGTTTTC 184
consensus_8389#1 GTATCGTTCACGCCTTTATGTATACTTACTATGGTTTGGCCTCAGCTGGACCTCGTTTTC 265
************************************ ***********************
consensus_8389#0 AAAAGTATATATGGTGGAAAAAATACTTAACTGGAGCTCAAATAACCCAATTCATCATTG 480
consensus_8389#2 AAAAGTATATATGGTGGAAAAAATACTTAACTGGAGCTCAAATAACCCAATTCATCATTG 244
consensus_8389#1 AAAAGTATATATGGTGGAAAAAATACTTAACTGGAGCTCAAATAACCCAATTCATCATTG 325
************************************************************
consensus_8389#0 TTACTTTTCACTCAACATATACATTGACTATTACCGATTGTAATTACCCAAGAGTTTTCA 540
consensus_8389#2 TTACTTTTCACTCAACATATACATTGACTATTACCGATTGTAATTACCCAAGAGTTTTCA 304
consensus_8389#1 TTACTTTTCACTCAACATATACATTGACTATTACCGATTGTAATTACCCAAGAGTTTTCA 385
************************************************************
consensus_8389#0 ATTATTGGATCTTGGTATCAGCATTGGTTTTTCTTATTTTATTTTCCAAATTCTATTACG 600
consensus_8389#2 ATTATTGGATCTTGGTATCAGCATTGGTTTTTCTTATTTTATTTTCCAAATTCTATTACG 364
consensus_8389#1 ATTATTGGATCTTGGTATCAGCATTGGTTTTTCTTATTTTATTTTCCAAATTCTATTACG 445
************************************************************
consensus_8389#0 AAGCCTACAAAAAACCAGTTCCTTTGGTAAACGGATTAACAGTTGATGGTAAATACGACA 660
consensus_8389#2 AAGCCTACAAAAAACCAGTTCCTTTGGTAAACGGATTAACAGTTGATGGTAAATACGACA 424
consensus_8389#1 AAGCCTACAAAAAACCAGTTCCTTTGGTAAACGGATTAACAGTTGATGGTAAATACGACA 505
************************************************************
consensus_8389#0 AGAAAACTCATTAAATTACCTTGTCAGTGTTTGTTTTTCCAACATTTGATAGAACTCAAC 720
consensus_8389#2 AGAAAACTCATTAAATTACCTTGTCAGTGTTTGTTTTTCCAACATCTGATAGAACTCAAC 484
consensus_8389#1 AGAAAACTCATTAAATTACCTTGTCAGTGTTTGTTTTTCCAACATCTGATAGAACTCAAC 565
********************************************* **************
consensus_8389#0 AATTCCCTAGTGATGATGACAATCGTTATAGTTGCATAGATAGGAATCTGTTGTTTTCAC 780
consensus_8389#2 AATTCCCTAGTGATGATGACAATCGTTATAGTTGCATAGATAGGAATCTGTTGTTTTCAC 544
consensus_8389#1 AATTCCCTAGTGATGATGACAATCGTTATAGTTGCATAGATATGAATCTGTTGTGTTCAA 625
****************************************** *********** ****
consensus_8389#0 CAGTTCATTTTTCATGCCTGTTTGCCAAGATAAACGAATTCCTTCTTCATGATCTATTCC 840
consensus_8389#2 CAGTTCATTTTTCATGCCTGTTTGCCAAGATAAACGAATTCCTTCTTCATGATCTATTCC 604
consensus_8389#1 CAAGTCATTTTTCATGCCTGTTTTGCCAGATAAACGAATTCCTTCT-CATGATCTATTNC 684
** ******************* * ******************* *********** *
consensus_8389#0 GAAATACCTTGTATCACCTTCTTTTACCGTTTTGAATGTAGGATTTTATTTTGTGAAATA 900
consensus_8389#2 GAAATACCTTGTATCACCTTCTTTTACCGTTNTGAATGTAGGATTCTATTNTGTGNAATA 664
consensus_8389#1 GAAATACCT-GNATCACCTTCTTTTACCGTTTTGAATGTAGGATTCTATTTTGTGAAAT- 742
********* * ******************* ************* **** **** ***
consensus_8389#0 TACATCATTCATCTTATGATTTTATATACGCACACACACAAATCCATACAAATGATTATA 960
consensus_8389#2 TACATCATTCATCTTATGATTNTATATACGCACACACANCAATCCATACAAATGATTATA 724
consensus_8389#1 TACATCATTCATCTTATGATTTTATATAC-CCCACAC-CCAATCC-TACAAG-GATTATA 798
********************* ******* * ***** ***** ***** *******
consensus_8389#0 CATCCATCTACATGTTTTTGTTACGAACGTTCTGTTTTAATTGTATAGTAACATTNTT-T 1019
consensus_8389#2 CATCCATCTACATGTTTTTGTTACGAAACGTCTGNTCTA-TTGTATAGAANCATTGTTCT 783
consensus_8389#1 CCTC-ATTTACCTGTTTT-GTTAC-AACAGTTTGTCTAA--TGGATAAAAACATTGTT-T 852
* ** ** *** ****** ***** ** * ** * ** *** * **** ** *
consensus_8389#0 TTCATGGTGAATTGATAATGGTTATTTGATAATTTATTTTATTACATCAAATAAATTATT 1079
consensus_8389#2 TTCATGGNGAATTGATA-TGGGTATTTGATANTT-ATTTTAT-ACATCAA-TAAATT-TT 838
consensus_8389#1 TTTTTGGGAAATGAAAA--GGGT-TTTGGAAATT--TTTTTTTTCCTCAA--AAATTTT- 904
** *** *** * * ** * **** * ** **** * * **** ***** *
consensus_8389#0 ATAAT 1084
consensus_8389#2 ATA-- 841
consensus_8389#1 -----
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||