cluster # 8401

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Schistosoma mansoni
cluster # 8401 cluster # 8401 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8401#0 length = 814 sequences # 4

consensus_8401#1 length = 449 sequences # 1
consensus_8401#2 length = 383 sequences # 1

consensusID : consensus_8401#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 814
fasta sequence

                              [CATACGTTAGTTTTATTTTAGTTTGCTGAAACAAAGCACAATAGTTTTATTAGGATATGCAAACTAAAAGTTTCTTTCCCAATAAAAGTTGTGAAAGGAGCTAAAATTGATCATCCTTGAAATTCTTCCACAAATATCAAATGTCAACCATTCCCGTTATTCTCCCACTTTTCACAGTAATCTGTTAATTGGTAACTACTCAAAATTATTACGATCCATATTTGCAGAGGTTCTAGTTAGAACTGTAGATAGCGTCGAGTATATCTTTCATCAAAGATGTCGTTTCAATTCATAACTCCTACAATGTTTGCGTCTTCCAATTTGTATGTTTAACTGATCTACAATGCCATGTTCATAGCAGACTGTCACTGATAACACCAGAAGCTGGAAATGAAAGTATGAATATTACATAACGTATATGCAATATTTGCACATTAAATGGATGGAAAACGTCAGTAAATGCAAAAAAACACTGCAGTTACTAGACTCTTAAAACACCGCGTACAAGCACAGTAAGTTAGATATCATAAGACATAAGACAAGATTTGGACGAAATTACTGAAAAAGGAAAATCAAAACTGAAATTAAGTTGATTATCATTACTAGATCATATGGAGCTCAATACAACTGATGAATGCCGAATTCTGATATGATGGAACTTCAATTACTGGTCAGTTTACCTGCACAATAAATCCGAACGATTTGGATATCAGAAATGAAGACGAGTAACTGCAAATAAACCATATTATTCTTTGTGAAGTTCGTAAAGAATCAACTGACGAAACAATATAATTATAATAAGCCTCGTACCGAA]

[+] EMBL CD076816             [CATACGTTAGTTTTATTTTAGTTTGCTGAAACAAAGCACAATAGTTTTATTAGGATATGCAAACTAAAAGTTTCTTTCCCAATAAAAGTTGTGAAAGGAGCTAAAATTGATCATCCTTGAAATTCTTCCACAAATATCAAATGTCAACCATTCCCGTTATTCTCCCACTTTTCACAGTAATCTGTTAATTGGTAACTACTCAAAATTATTACGATCCATATTTGCAGAGGTTCTAGTTAGAACTGTAGATAGCGTCGAGTATATCTTTCATCAAAGATGTCGTTTCAATTCATAACTCCTACAATGTTTGCGTCTTCCAATTTGTATGTTTAACTGATCTACAATGCCATGTTCATAGCAGACTGTCACTGATAACACCAGAAGCTGGAAATGAAAGTATGAATATTACATAACGTATATGCAATATTTGCACATTAAATGGATGGAAAACGTCAGTAAATGCAAAAAAACACTGCAGTTACTAGACTCTTAAAACACCGCGTACAAGCACAGTAAGTTAGATATCATAAG                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD076576             [   ACGTTAGTTTTATTTTAGTTTGCTGAAACAAAGCACAATAGTTTTATTAGGATATGCAAACTAAAAGTTTCTTTCCCAATAAAAGTTGTGAAAGGAGCTAAAATTGATCATCCTTGAAATTCTTCCACAAATATCAAATGTCAACCATTCCCGTTATTCTCCCACTTTTCACAGTAATCTGTTAATTGGTAACTACTCAAAATTATTACGATCCATATTTGCAGAGGTTCTAGTTAGAACTGTAGATAGCGTCGAGTATATCTTTCATCAAAGATGTCGTTTCAATTCATAACTCCTACAATGTTTGCGTCTTCCAATTTGTATGTTTAACTGATCTACAATGCCATGTTCATAGCAGACTGTCACTGATAACACCAGAAGCTGGAAATGAAAGTATGAATATTACATAACGTATATGCAATATTTGCACATTAAATGGATGGAAAACGTCAGTAAATGCAAAAAAACACTGCAGTTACTAGACTCTTAAAACACCGCGTACAAGCACAGTAAGTTAGATATCATAAGACATAAGACAAGATTTGGACGAAATTACTGAAAAAGGAAAATCAAAACTGAAATTAAGTTGATTATCATTACTAGATCATATGGAGCTCAATACAACTGATGAATGCCGAATTCTGA                                                                                                                                                                      ]
[-] EMBL CD082993             [                                                                                                                                                                                                     ACTCAAAATTATTACGATCCATATTGNCAGAGGTTCTAGTTAGAACTGTAGATAGCGTCGAGTATATCTTTCATCAAAGATGTCGTTTCAATTCATAACTCCTACAATGTTTGCGTCTTCCAATTTGTATGTTTAACTGATCTACAATGCCATGTTCATAGCAGACTGTCACTGATAACACCAGAAGCTGGAAATGAAAGTATGAATATTACATAACGTATATGCAATATTTGCACATTAAATGGATGGAAAACGTCAGTAAATGCAAAAAAACACTGCAGTTACTAGACTCTTAAAACACCGCGTACAAGCACAGTAAGTTAGATATCATAAGACATAAGACAAGATTTGGACGAAATTACTGAAAAAGGAAAATCAAAACTGAAATTAAGTTGATTATCATTACTAGATCATATGGAGCTCAATACAACTGATGAATGCCGAATTCTGATATGATGGAACTTCAATTACTGGTCAGTTTACCTGCACAATAAATCCGAACGATTTGGATATCAGAAATGAAGACGAGTAACTGCAAATAAACCATATTATTCTTTGTGAAGTTCGTAAAGAATCAACTGAC                                  ]
[-] EMBL CD083245             [                                                                                                                                                                                                                                         TAGTTAGAACTGTAGATAGCGTCGAGTATATCTTTCATCAAAGATGTCGTTTCAATTCATAACTCCTACAATGTTTGCGTCTTCCAATTTGTATGTTTAACTGATCTACAATGCCATGTTCATAGCAGACTGTCACTGATAACACCAGAAGCTGGAAATGAAAGTATGAATATTACATAACGTATATGCAATATTTGCACATTAAATGGATGGAAAACGTCAGTAAATGCAAAAAAACACTGCAGTTACTAGACTCTTAAAACACCGCGTACAAGCACAGTAAGTTAGATATCATAAGACATAAGACAAGATTTGGACGAAATTACTGAAAAAGGAAAATCAAAACTGAAATTAAGTTGATTATCATTACTAGATCATATGGAGCTCAATACAACTGATGAATGCCGAATTCTGATATGATGGAACTTCAATTACTGGTCAGTTTACCTGCACAATAAATCCGAACGATTTGGATATCAGAAATGAAGACGAGTAACTGCAAATAAACCATATTATTCGTTGTGAAGTTCGTAAAGAATCAACTGACGAAACAATATAATTATAATAAGCCTCGTACCGAA]




>consensus_8401#0
CATACGTTAGTTTTATTTTAGTTTGCTGAAACAAAGCACAATAGTTTTATTAGGATATGC
AAACTAAAAGTTTCTTTCCCAATAAAAGTTGTGAAAGGAGCTAAAATTGATCATCCTTGA
AATTCTTCCACAAATATCAAATGTCAACCATTCCCGTTATTCTCCCACTTTTCACAGTAA
TCTGTTAATTGGTAACTACTCAAAATTATTACGATCCATATTTGCAGAGGTTCTAGTTAG
AACTGTAGATAGCGTCGAGTATATCTTTCATCAAAGATGTCGTTTCAATTCATAACTCCT
ACAATGTTTGCGTCTTCCAATTTGTATGTTTAACTGATCTACAATGCCATGTTCATAGCA
GACTGTCACTGATAACACCAGAAGCTGGAAATGAAAGTATGAATATTACATAACGTATAT
GCAATATTTGCACATTAAATGGATGGAAAACGTCAGTAAATGCAAAAAAACACTGCAGTT
ACTAGACTCTTAAAACACCGCGTACAAGCACAGTAAGTTAGATATCATAAGACATAAGAC
AAGATTTGGACGAAATTACTGAAAAAGGAAAATCAAAACTGAAATTAAGTTGATTATCAT
TACTAGATCATATGGAGCTCAATACAACTGATGAATGCCGAATTCTGATATGATGGAACT
TCAATTACTGGTCAGTTTACCTGCACAATAAATCCGAACGATTTGGATATCAGAAATGAA
GACGAGTAACTGCAAATAAACCATATTATTCTTTGTGAAGTTCGTAAAGAATCAACTGAC
GAAACAATATAATTATAATAAGCCTCGTACCGAA

consensusID : consensus_8401#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence

                              [GAACTGTAGATAGCGCCGAGTATATCTTTCATCAAAGATGTCGTTTCAATTCATAACTCCTACAATGTTTGCGTCTTCCAATTTGTATGTTTAACTGATCTACAATGCCATGTTCATAGCAGACTGTCACTGATAACACCAGAAGTTTATAGTGTGAGACATCGAACTGCTGGAAAGTAATACCGTCTTTATTTGGATCCAACTTTTCTAATTTACGCCTTGGCCAATGCGAATTTGTTTGAACGTCCAGATGAGACAAGGCAGAACTTTCGTCCACTAAAGCTATATCTTCAGTTTCGATATCATCCAACAACATAAGTTCCTGCTCGAACTTTGAGGGCTCTGGGGCATCATCATGGTTACCTCTTGGTTTTTTAAACGAGCCAGGCCCCTTCTGAGGGACGAACGAAGGACGCTTGTTGGACATCGCTGCCCAGGTTTTTCGTAAT]

[-] EMBL CD113507             [GAACTGTAGATAGCGCCGAGTATATCTTTCATCAAAGATGTCGTTTCAATTCATAACTCCTACAATGTTTGCGTCTTCCAATTTGTATGTTTAACTGATCTACAATGCCATGTTCATAGCAGACTGTCACTGATAACACCAGAAGTTTATAGTGTGAGACATCGAACTGCTGGAAAGTAATACCGTCTTTATTTGGATCCAACTTTTCTAATTTACGCCTTGGCCAATGCGAATTTGTTTGAACGTCCAGATGAGACAAGGCAGAACTTTCGTCCACTAAAGCTATATCTTCAGTTTCGATATCATCCAACAACATAAGTTCCTGCTCGAACTTTGAGGGCTCTGGGGCATCATCATGGTTACCTCTTGGTTTTTTAAACGAGCCAGGCCCCTTCTGAGGGACGAACGAAGGACGCTTGTTGGACATCGCTGCCCAGGTTTTTCGTAAT]




>consensus_8401#1
GAACTGTAGATAGCGCCGAGTATATCTTTCATCAAAGATGTCGTTTCAATTCATAACTCC
TACAATGTTTGCGTCTTCCAATTTGTATGTTTAACTGATCTACAATGCCATGTTCATAGC
AGACTGTCACTGATAACACCAGAAGTTTATAGTGTGAGACATCGAACTGCTGGAAAGTAA
TACCGTCTTTATTTGGATCCAACTTTTCTAATTTACGCCTTGGCCAATGCGAATTTGTTT
GAACGTCCAGATGAGACAAGGCAGAACTTTCGTCCACTAAAGCTATATCTTCAGTTTCGA
TATCATCCAACAACATAAGTTCCTGCTCGAACTTTGAGGGCTCTGGGGCATCATCATGGT
TACCTCTTGGTTTTTTAAACGAGCCAGGCCCCTTCTGAGGGACGAACGAAGGACGCTTGT
TGGACATCGCTGCCCAGGTTTTTCGTAAT

consensusID : consensus_8401#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 383
fasta sequence

                              [CCCTACAAACTCTTGAGATTTCTCTTTAAATAACATAAAATTAAAATCTTCACGAAAAACACTTAAGTGATCCGTTGAAAAATCTTTCGGCGCTGGCACATAAAAAGTGGGAAAAAAACCGTGCACATGCCCGCATACACTATGACCCTTTGCAGTTATACCAAACAAACGTATAATTGGAACAGGACTTTGAGTAGCACCAGGCATACCAGGTAAATGTTCACCTTTATAGTGTGAGACATCAAACGGCTGGAAAGTATTACCGTCTTTATTTGGATCCAACTTTACTAATTTACGCCTTGGCCAAAGCGAATTTGTTAGAACGTCCAGATGAGACAAGGCAGAACTTTCGTCCACTAAAGCTATATCTTCAGTTTCGATAT]

[+] EMBL CD202461             [CCCTACAAACTCTTGAGATTTCTCTTTAAATAACATAAAATTAAAATCTTCACGAAAAACACTTAAGTGATCCGTTGAAAAATCTTTCGGCGCTGGCACATAAAAAGTGGGAAAAAAACCGTGCACATGCCCGCATACACTATGACCCTTTGCAGTTATACCAAACAAACGTATAATTGGAACAGGACTTTGAGTAGCACCAGGCATACCAGGTAAATGTTCACCTTTATAGTGTGAGACATCAAACGGCTGGAAAGTATTACCGTCTTTATTTGGATCCAACTTTACTAATTTACGCCTTGGCCAAAGCGAATTTGTTAGAACGTCCAGATGAGACAAGGCAGAACTTTCGTCCACTAAAGCTATATCTTCAGTTTCGATAT]




>consensus_8401#2
CCCTACAAACTCTTGAGATTTCTCTTTAAATAACATAAAATTAAAATCTTCACGAAAAAC
ACTTAAGTGATCCGTTGAAAAATCTTTCGGCGCTGGCACATAAAAAGTGGGAAAAAAACC
GTGCACATGCCCGCATACACTATGACCCTTTGCAGTTATACCAAACAAACGTATAATTGG
AACAGGACTTTGAGTAGCACCAGGCATACCAGGTAAATGTTCACCTTTATAGTGTGAGAC
ATCAAACGGCTGGAAAGTATTACCGTCTTTATTTGGATCCAACTTTACTAATTTACGCCT
TGGCCAAAGCGAATTTGTTAGAACGTCCAGATGAGACAAGGCAGAACTTTCGTCCACTAA
AGCTATATCTTCAGTTTCGATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8401#1      ------------------------------------------------------------
consensus_8401#2      ------------------------------------------------------------
consensus_8401#0      CATACGTTAGTTTTATTTTAGTTTGCTGAAACAAAGCACAATAGTTTTATTAGGATATGC 60
                                                                                  

consensus_8401#1      ------------------------------------------------------------
consensus_8401#2      ------------------------------------------------------------
consensus_8401#0      AAACTAAAAGTTTCTTTCCCAATAAAAGTTGTGAAAGGAGCTAAAATTGATCATCCTTGA 120
                                                                                  

consensus_8401#1      ------------------------------------------------------------
consensus_8401#2      ---------------------------------------CCCTACAAACTCTTGAGATTT 21
consensus_8401#0      AATTCTTCCACAAATATCAAATGTCAACCATTCCCGTTATTCTCCCACTTTTCACAGTAA 180
                                                                                  

consensus_8401#1      -----------------------------------------------------------G 1
consensus_8401#2      CTCTTTAAATAACATAAAATTAAAATCTTCACGAAAAACACTTAAGTGATCCGTTGAAAA 81
consensus_8401#0      TCTGTTAATTGGTAACTACTCAAAATTATTACGATCCATATTTGCAGAGGTTCTAGTTAG 240
                                                                                  

consensus_8401#1      AACTGTAGATAGCGCCGAGTATATCTTTCATCAAAGATGTCGTTTCAATTCATAACTCCT 61
consensus_8401#2      ATCTTTCGGCGCTGGCACATAAAAAGTGGGAAAAAAACCGTGCACATGCCCGCATACACT 141
consensus_8401#0      AACTGTAGATAGCGTCGAGTATATCTTTCATCAAAGATGTCGTTTCAATTCATAACTCCT 300
                      * ** * *     * *   ** *   *     *** *    *        *  *    **

consensus_8401#1      ACAATG-TTTGC-GTCTTCCAATTTGTATGTTTAACTGATCTACAATGCCATGTTCATAG 119
consensus_8401#2      ATGACCCTTTGCAGTTATACCAAACAAACGTATAATTGGA--ACAGGACTTTGAGTAGCA 199
consensus_8401#0      ACAATG-TTTGC-GTCTTCCAATTTGTATGTTTAACTGATCTACAATGCCATGTTCATAG 358
                      *  *   ***** **  * * *     * ** *** **    ***   *  **   *   

consensus_8401#1      CAGACTGTCACTGATAACACCAGAAGTTTATAGTGTGAG-----ACATCGAACTGCTGGA 174
consensus_8401#2      CCAGGCATACCAGGTAAATGTTCACCTTTATAGTGTGAG-----ACATCAAACGGCTGGA 254
consensus_8401#0      CAGACTGTCACTGATAACACCAGAAGCTGGAAATGAAAGTATGAATATTACATAACGTAT 418
                      *      *  * * ***      *   *   * **  **     * **   *   *    

consensus_8401#1      AAGTAATACCGTCT--TTATTTGGATCCAA--CTTTTCTAATTT----ACGCCTTGGCCA 226
consensus_8401#2      AAGTATTACCGTCT--TTATTTGGATCCAA--CTTTACTAATTT----ACGCCTTGGCCA 306
consensus_8401#0      ATGCAATATTTGCACATTAAATGGATGGAAAACGTCAGTAAATGCAAAAAAACACTGCAG 478
                      * * * **    *   ***  *****  **  * *   *** *     *   *   **  

consensus_8401#1      ATGCGAATTTGTTTGAACGTC-----CAGATGAGACAAGGCAGAACTTTCGTCCACTAAA 281
consensus_8401#2      AAGCGAATTTGTTAGAACGTC-----CAGATGAGACAAGGCAGAACTTTCGTCCACTAAA 361
consensus_8401#0      TTACTAGACTCTTAAAACACCGCGTACAAGCACAGTAAGTTAGATATCATAAGACATAAG 538
                         * *   * **  ***  *     **        ***  ***  *         *** 

consensus_8401#1      GCTATATCTT--CAGTTTCGATATCATCCAACAACATAAGTTCCTGCTCGAACTTTGAGG 339
consensus_8401#2      GCTATATCTT--CAGTTTCGATAT------------------------------------ 383
consensus_8401#0      ACAAGATTTGGACGAAATTACTGAAAAAGGAAAATCAAAACTGAAATTAAGTTGATTATC 598
                       * * ** *   *    *   *                                      

consensus_8401#1      GCTCTGGGGCATCATCATGGTTACCTCTTGGTTTTTTAAACGAGCCAGGCCCCTTCTGAG 399
consensus_8401#2      ------------------------------------------------------------
consensus_8401#0      ATTACTAGATCATATGGAGCTCAATACAACTGATGAATGCCGAATTCTGATATGATGGAA 658
                                                                                  

consensus_8401#1      GGACGAACGAAGGACGCTTGTTGGACATCGCTGCCCAGGTTTTTCGTAAT---------- 449
consensus_8401#2      ------------------------------------------------------------
consensus_8401#0      CTTCAATTACTGGTCAGTTTACCTGCACAATAAATCCGAACGATTTGGATATCAGAAATG 718
                                                                                  

consensus_8401#1      ------------------------------------------------------------
consensus_8401#2      ------------------------------------------------------------
consensus_8401#0      AAGACGAGTAACTGCAAATAAACCATATTATTCTTTGTGAAGTTCGTAAAGAATCAACTG 778
                                                                                  

consensus_8401#1      ------------------------------------
consensus_8401#2      ------------------------------------
consensus_8401#0      ACGAAACAATATAATTATAATAAGCCTCGTACCGAA 814