These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8402#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 755 fasta sequence [CGAGGCGGCACGAGGCGAACAAATGCTTCTAATGACGTTTATATAATTCAGCTTGGAATCATCGTTACTATATTGTAATGTGTGACGAAGGTTTATCGTCTACCGTTCTTCAGCGTGAAATAGATTTTGTTCAAAAACGCATCTTTTTTGCTCCGAATAATGAAAGTTCATGGAATTATTTTTATGGTTTGTTAATGCCCATAGTACATGGGAAAAAGCATATTCATAATTCTCCATGTAAACCGTTAGCTGATCAGAATCTCAATAATAAGCAAAATATTATTTCTGGTCTTCAAATTATGCGGAAATTTGCAGAGGAATTAATTGCATCTGATCAAATAGCTGGTGATTGTTTAGCACCGCTTAGTTTCTTGGTTGAAGTGTATGCTGATTGTTTAGAATCTTATTTTACTGAAAAACCAGGTAGTACGTGCGAAACACATTCTAGTCTCAATGCTGTTGGTTTGACTATTGATGACTCGAATAATGCCAGTTCTGATCCCAAAGAAATATTTGACCAAGCTGTCAATTTATGTGAACGTTTGGCCCGTGAAGTGGATCGAATTCGATGTAATTATTGGCAATATCGTGCTCGTCAGTTAATGTGTTTTGCTAAAAAAGTCAACCTAATTCCTGAAATCACTATACCATAAACATCTAAACCAGGTTTTACAATTTTACGTCACAAAATAACTTGATAAATGACGTATGTAATATTTATTTCTGCTACTTGTACATGTTTCACGAATCATAAG] [+] EMBL CD083377 [CGAGGCGGCACGAGGCGAACAAATGCTTCTAATGACGTTTATATAATTCAGCTTGGAATCATCGTTACTATATTGTAATGTGTGACGAAGGTTTATCGTCTACCGTTCTTCAGCGTGAAATAGATTTTGTTCAAAAACGCATCTTTTTTGCTCCGAATAATGAAAGTTCATGGAATTATTTTTATGGTTTGTTAATGCCCATAGTACATGGGAAAAAGCATATTCATAATTCTCCATGTAAACCGTTAGCTGATCAGAATCTCAATAATAAGCAAAATATTATTTCTGGTCTTCAAATTATGCGGAAATTTGCAGAGGAATTAATTGCATCTGATCAAATAGCTGGTGATTGTTTAGCACCGCTTAGTTTCTTGGTTGAAGTGTATGCTGATTGTTTAGAATCTTATTTTACTGAAAAACCAGGTAGTACGTGCGAAACACATTCTAGTCTCAATGCTGTTGGTTTGAC ] [-] EMBL CD076263 [ TAATGAAAGTTCATGGAATTATTTTTATGGTTGCTTAATGCCCATAGTACATGGGAAAAAGCATATTCATAATTCTCCATGTAAACCGTTAGCTGATCAGAATCTCAATAATAAGCAAAATATTATTTCTGGTCTTCAAATTATGCGGAAATTTGCAGAGGAATTAATTGCATCTGATCAAATAGCTGGTGATTGTTTAGCACCGCTTAGTTTCTTGGTTGAAGTGTATGCTGATTGTCTAGAATCTTATTTTACTGAAAAACCAGGTAGTACGTGCGAAACACATTCTAGTCTCAATGCTGTTGGTTTGACTATTGATGACTCGAATAATGCCAGTTCTGATCCCAAAGAAATATTTGACCAAGCTGTCAATTTATGTGAACGTTTGGCCCGTGAAGTGGATCGAATTCGATGTAATTATTGGCAATATCGTGCTCGTCAGTTAATGTGTTTTGCTAAAAAAGTCAACCTAATTCCTGAAATCACTATACCATAAACATCTAAACCAGGTTTTACAATTTTACGTCACAAAATAACTTGATAAATGACGTATGTAATATTTATTTCTGCTACTTGTACATGTTTCACGAATCATAAG] [-] EMBL CD148126 [ TGCTGATTGTTTAGAATCTTATTTTACTGAAAAACCAGGTAGTACGTGCGAAACACATTCTAGTCTCAATGCTGTTGGTTTGACTATTGATGACTCGAATAATGCCAGTTCTGATCCCAAAGAAATATTTGACCAAGCTGTCAATTTATGTGAACGTTTGGCCCGTGAAGTGGATCGAATTCGATGTAATTATTGGCAATATCGTGCTCGTCAGTTAATGTGTTTTGCTAAAAAAGTCAACCTAATTCCTGAAATCACTATACCATAAAC ] [+] EMBL BG932370 [ gAGTACGTGCGAAACACATTCTAGTCTCAATGCTGTTGGTTTGACTATTGATGACTCGAATAATGCCAGTTCTGATCCCGAAGAAATATTTGACCAAGCTGTCAATTTATGTGAACGTTTGGCCCGT ] consensusID : consensus_8402#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 679 fasta sequence [CTCGNAGCCAATATTCGGCACGAGGCGTTGCATGTTATTCTTCTGCAACCTATGAGTACTCGTGAAAAGTATGTATTCTACAAAGATAGACAAGAATGGGATGACGTTAGTCCGATTCCTCAGGATGATGGAGGTCGGAACATTGTAAATATTGCATATTCTGAAGAATTTGTTGATGCACATGACTATTTTCGTGCAGCCTTAATGAAGGACGAGCGTAGTGAGCGGACACTTTCACTAACCTCTGACATTTTATTGTTTAATCCCGCCAACTACACAGCTTGGGAGTACAGAAGACGGATCATCGAGGAAATTTCATCTGACCTAAATGGTGAGCTGCGTTTCGTTGGTGAGCTTATTGAAGACTATTCAAAAAATTACCAGTTATGGCATCATCGACAATGGGTTATCGAGAAAGTATCGCAACAGAATCAAAATGACTCCAGCTTTATAACACATCTTAGTTCAGAGGAATTAGATTTCGTTGGATTTGTCATTTCAGATGATCCTAAAAATTATCATGCATGGCAGCACCGTCGGTGGATCATAACTTTTTTCAAAGTGCCTGTTGAAAAAGAGTTGGCATTCACCGAACAAATGCTTCTAAATGACGTTTATAATAATTCAGCTTGGAATCATCGTTACTATATTGTAATGTGTGACGAAGGTTTATCGTCTA] [+] EMBL CD082668 [CTCGNAGCCAATATTCGGCACGAGGCGTTGCATGTTATTCTTCTGCAACCTATGAGTACTCGTGAAAAGTATGTATTCTACAAAGATAGACAAGAATGGGATGACGTTAGTCCGATTCCTCAGGATGATGGAGGTCGGAACATTGTAAATATTGCATATTCTGAAGAATTTGTTGATGCACATGACTATTTTCGTGCAGCCTTAATGAAGGACGAGCGTAGTGAGCGGACACTTTCACTAACCTCTGACATTTTATTGTTTAATCCCGCCAACTACACAGCTTGGGAGTACAGAAGACGGATCATCGAGGAAATTTCATCTGACCTAAATGGTGAGCTGCGTTTCGTTGGTGAGCTTATTGAAGACTATTCAAAAAATTACCAGTTATGGCATCATCGACAATGGGTTATCGAGAAAGTATCGCAACAGAATCAAAATGACTCCAGCTTTATAACACATCTTAGTTCAGAGGAATTAGATTTCGTTGGATTTGTCATTTCAGATGATCCTAAAAATTATCATGCATGGCAGCACCGTCGGTGGATCATAACTTTTTTCAAAGTGCCTGTTGAAAAAGAGTTGGCATTCACCGAACAAATGCTTCTAAATGACGTTTATAATAATTCAGCTTGGAATCATCGTTACTATATTGTAATGTGTGACGAAGGTTTATCGTCTA] [+] EMBL CD186994 [ GGATGACGTTAGTCCGATTCCTCAGGATGATGGAGGTCGGAACATTGTAAATATTGCATATTCTGAAGAATTTGTTGATGCACATGACTATTTTCGTGCAGCCTTAATGAAGGACGAGCGTAGTGAGCGGACACTTTCACTAACCTCTGACATTTTATTGTTTAATCCCGCCAACTACACAGCTTGGGAGTACAGAAGACGGATCATCGAGGAAATTTCATCTGACCTAAATGGTGAGCTGCGTTTCGTTGGTGAGCTTATTGAAGACTATTCAAAAAATTACCAGTTATGGCATCATCGACAATGGGTTATCGAGAAAGTATCGCAACAGAATCAAAATGACTCCAGCTTTATAACACATCTTAGTTCAGAGGAATTAGATTTCGTTGGATTTGTCATTTCAGATGATCCTAAAAATTATCATGCATGGCAGCACCGTCGGTGGATCATAACTTTTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8402#0 ----------CGAGGCGGCACGAGGCGA-ACAAATGCTTCTAATGACGTTTATATAATTC 49 consensus_8402#1 CTCGNAGCCAATATTCGGCACGAGGCGTTGCATGTTATTCTTCTGCAACCTATG-AGTAC 59 * ************ ** * **** ** *** * * * consensus_8402#0 AGCTTGGAATCATCGTTACTATATTGTAATGTGTGACGAAGGTTTATCGTCTACC--GTT 107 consensus_8402#1 TCGTGAAAAGTAT--GTATTCTACAAAGATAGACAAGAATGGGATGACGTTAGTCCGATT 117 * ** ** ** * ** ** * * ** * *** * ** consensus_8402#0 CTTCAGCGTGAAATAGATTTTGTTCAAAAACGCATCTTTTTTGCTCCGAATAAT--GAAA 165 consensus_8402#1 CCTCAGGATGA--TGGAGGTCGGAACATTGTAAATATTGCATATTCTGAAGAATTTGTTG 175 * **** *** * ** * * * ** ** * ** *** *** * consensus_8402#0 GTTCATGGAATTATTTTTATGGTTTGTTAATGCCCATAGTACATGG-GAAAAAGCATATT 224 consensus_8402#1 ATGCACATGACTATTTTCGTGCAGCCTTAATGAAGGACGAGCGTAGTGAGCGGACACTTT 235 * ** * ****** ** ****** * * * * ** ** ** consensus_8402#0 CATAATTCTCCATGTAAACCGTTAGCTGATCAGAATCTCAATAATAAGCAAAATATTATT 284 consensus_8402#1 CACTAACCTCT-----GACATTTTATTGTTTA--ATCCCGCCAACTA-CA------CAGC 281 ** * *** ** ** ** * * *** * ** * ** * consensus_8402#0 TCTGGTCTTCAAATTATGCGGAAATTTGCAGAGGAATTAATTGCATCTGATCAAATAGCT 344 consensus_8402#1 TTGGGAGTACAGA--AGACGGA---TCATCGAGGAA---ATTTCATCTGACC---TAAAT 330 * ** * ** * * **** * ****** *** ******* * ** * consensus_8402#0 GGTGATTGTTTAGCACCGCTTAGTTTCTTGGTTGAAGTGTATGCTGATTGTTTAGAATCT 404 consensus_8402#1 GGTGA--GCTGCGTTTCG-TTGGTGAGCTTATTGAAGACTATTCAAAAAATTACCAGTTA 387 ***** * * * ** ** ** * ****** *** * * ** * * consensus_8402#0 TATTTTACTGAAAAACCAGGTAGTACGTGCGAAACACATTCTAGTCTCAATGCTGTTGGT 464 consensus_8402#1 TGGCATCATCGACAATGGGTTATCGAGAAAGTATCGCAACAGAATCAAAATGACTCCAGC 447 * * * * ** * ** * * * * ** * ** **** * consensus_8402#0 TTGACTATTGATGACTCGAATAATGCCAGTTCTGATCCCAAAGAAATATTTGACCAAGCT 524 consensus_8402#1 -------TTTATAACAC-----ATCTTAGTTCAGAG---GAATTAGATTTCGTTGGATTT 492 ** ** ** * ** ***** ** ** * ** * * * consensus_8402#0 GTCAATTTATGTGAACGTTTGGCCCGTGAAGTGGATCGAATTCGATGTAATTATTGGCAA 584 consensus_8402#1 GTCATTTCAGATGA---------TCCTAAAAATTATCATGCATGGCAGCACCGTCGGTGG 543 **** ** * *** * * ** *** * * * ** consensus_8402#0 TATCGTGCTCGTCAGTTAATGTGTTTTGCTAAAAAAGTCAACCTAATTCCTGAAATCACT 644 consensus_8402#1 -ATCATAA-CTTTTTTCAAAGTGCCT-GTTGAAAAAG-------AGTTG--GCATTCACC 591 *** * * * * ** *** * * * ****** * ** * * **** consensus_8402#0 ATACCATAAACATCTAAACCAGGTTTTACAATTTTACGTCACAAAATAAC--TTGATAAA 702 consensus_8402#1 GAAC-AAATGCTTCTAAATGACGTTT-ATAATAATTCAGCTTGGAATCATCGTTACTATA 649 ** * * * ****** * **** * *** * * * *** * ** ** * consensus_8402#0 TGACGTATGTAATATTTATTTCTGCTACTTGTACATGTTTCACGAATCATAAG 755 consensus_8402#1 TTGTA-ATGTGTGACGAAGGTTTATCGTCTA---------------------- 679 * **** * * * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||