cluster # 8403

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Schistosoma mansoni
cluster # 8403 cluster # 8403 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8403#0 length = 590 sequences # 2

consensus_8403#1 length = 489 sequences # 4

consensusID : consensus_8403#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 590
fasta sequence

                              [TAAAGGTGGAGGTGGTTTGTACGGATTGAATGTTTGAAAGTACAAAGTTGATGGAACATTCGATTGGAAAGTAGGGAAATTTTGGTAAGGATGAATGTACTGACCAGATG-CTGCGAATACATT-GGCACTTG-GGGGATATAAA-GTATGGTTTTGGAAAGCAGATGTTACCCATGAAACTGGTTGTGAACCGACAAAAGGTGGAAGTTGAAGAGGAGGGCAGAATCCATAAGGAGGAATTAAGTTTGTTGAAACCACAGAAGGAGGATATGGAATGTTAGCGTGATAAGGGACTGAATACGGGACTAATGTGTTATTATAATAATTTGAGCTGTTGGTAGACGAAGTTGAAGCTGAACCAAACGTTGAACAGGTGACCGAAGATGGATTCTGGCTAGGTGCACCAAATTGGGTTGAACTACAACTTGCTAAAGGGTCAGGTTCTGGATTTTCTGTAGTTGATAGTACATAGATTGGTCCATCTGTCGGCAGACTCGAAAGATCTTTAGGAGAGATGTAAATAATCCTTTTATCAAGCGGAAAACGACTTCCAGTCATGTCAAGTCACGATTGACTATGATCACCACTACAGG]

[+] EMBL CD159317             [TAAAGGTGGAGGTGGTTTGTACGGATTGAATGTTTGAAAGTACAAAGTTGATGGAACATTCGATTGGAAAGTAGGGAAATTTTGGTAAGGATGAATGTACTGACCAGATG CTGCGAATACATT GGCACTTG GGGGATATAAA GTATGGTTTTGGAAAGCAGATGTTACCCATGAAACTGGTTGTGAACCGACAAAAGGTGGAAGTTGAAGAGGAGGGCAGAATCCATAAGGAGGAATTAAGTTTGTTGAAACCACAGAAGGAGGATATGGAATGTTAGCGTGATAAGGGACTGAATACGGGACTAATGTGTTATTATAATAATTTGAGCTGTTGGTAGACGAAGTTGAAGCTGAACCAAACGTTGAACAGGTGACCGAAGATGGATTCTGGCTAGGTGCACCAAATTGGGTTGAACTACAACTTGCTAAAGGGTCAGGTTCTGGATTTTCTGTAGTTGATAGTACATAGATTGGTCCATCTGTCGGCAGACTCGAAAGATCTTTAGGAGAGATGTAAATAATCCTTTTATCAAGCGGAAAACGACTTCCAGTCATGTCAAGTCACGATTGACTATGATCACCACTACAGG]
[+] EMBL CD068257             [                              aGTTTGAAAGTACAAAGTTGATGGAACATTCGATTGGAAAGTAGGGAAATTTTGGTAAGGATGAATGTACTGACCAGATGTCTGCGAATACATTGGGCACTTGCGGCGATATAAACGTATGGTTTTGGGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]




>consensus_8403#0
TAAAGGTGGAGGTGGTTTGTACGGATTGAATGTTTGAAAGTACAAAGTTGATGGAACATT
CGATTGGAAAGTAGGGAAATTTTGGTAAGGATGAATGTACTGACCAGATGCTGCGAATAC
ATTGGCACTTGGGGGATATAAAGTATGGTTTTGGAAAGCAGATGTTACCCATGAAACTGG
TTGTGAACCGACAAAAGGTGGAAGTTGAAGAGGAGGGCAGAATCCATAAGGAGGAATTAA
GTTTGTTGAAACCACAGAAGGAGGATATGGAATGTTAGCGTGATAAGGGACTGAATACGG
GACTAATGTGTTATTATAATAATTTGAGCTGTTGGTAGACGAAGTTGAAGCTGAACCAAA
CGTTGAACAGGTGACCGAAGATGGATTCTGGCTAGGTGCACCAAATTGGGTTGAACTACA
ACTTGCTAAAGGGTCAGGTTCTGGATTTTCTGTAGTTGATAGTACATAGATTGGTCCATC
TGTCGGCAGACTCGAAAGATCTTTAGGAGAGATGTAAATAATCCTTTTATCAAGCGGAAA
ACGACTTCCAGTCATGTCAAGTCACGATTGACTATGATCACCACTACAGG

consensusID : consensus_8403#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 489
fasta sequence

                              [AGGTGACCGAAGATGGATTCTGGCTAGGTGCACCAAATTGGGTTGAACTACAACTTGCTAAAGGGTCAGGTTCTGGATTTTCTGTAGTTGATAGTACATAGATTGGTCCATCTGTCGGCAGACTCGAAAGATCTTTAGGAGAGATGTAAATAATCCTTTTATCAAGCGGAAAACGACTTCCAGTCATCTTGTTAATTTATGATATATGCGTCAGGCATAGCTTGTCCAAGAGGGATGGTAATCCACAGGTGAGTACATGTTCGCCAAGCCTTCTCTGTAAGCTATCTGATTCAAGCGGTATGTATT-GGTCAAGTGATCGG-TTTATAACGTAGTTGGACTAATCGACCTGAGTTATCTGACCTACTAATCAAGGTCACTGGACATTAGTGTAATATGCTCTGTTTTAGTCATTTCCGCAAGCTATGATTAACGCTGCTCCATTAAACATTCGCCTGCAGTTTTCTTTTCCAAGGGGGATTGGAGCCTAGG]

[+] EMBL CD165206             [AGGTGACCGAAGATGGATTCTGGCTAGGTGCACCAAATTGGGTTGAACTACAACTTGCTAAAGGGTCAGGTTCTGGATTTTCTGTAGTTGATAGTACATAGATTGGTCCATCTGTCGGCAGACTCGAAAGATCTTTAGGAGAGATGTAAATAATCCTTTTATCAAGCGGAAAACGACTTCCAGTCATCTTGTTAATTTATGATATATGCGTCAGGCATAGCTTGTCCAAGAGGGATGGTAATCCACAGGTGAGTACATGTTCGCCAAGCCTTCTCTGTAAGCTATCTGATTCAAGCGGTATGTATTGGGTC AGTGATCGGNTTTATAc                                                                                                                                                                  ]
[-] EMBL CD130277             [                                                                                            AGTACATAGATNGGTCCATCTGTCGGCAGACTCGAAAGATCTTTAGGAGAGATGTAAATAATCCTTTTATCAAGCGGAAAACGACTTCCAGTCATCTTGTTAATTTATGATATATGCGTCAGGCATAGCTTGTCCAAGAGGGATGGTAATCCACAGGTGAGTACATGTTCGCCAAGCCTTCTCTGTAAGCTATCTGATTCAAGCGGTATGTATT GGTCAAGTGATCGG TTTATAACGTAGTTGGACTAATCGACCTGAGTTATCTGACCTACTAATCAAGGTCACTGGACATTAGTGTAATATGCTCTGTTTTAGTCATTTCCACAAGCTATGATTAACGCTGCTCCATTAAACATTCGCCTGCAGTTTTCTTTTCCAAGGGGGATTGGAGCCTAGG]
[-] EMBL CD165134             [                                                                                                                                                                           AACGACTTCCAGTCATCTTGTTAATTTATGATATATGCGTCAGGCATAGCTTGTCCAAGAGGGATGGTAGTCCACAGGTGAGTACATGTTCGCCAAGCCTTCTCTGTAAGCTATCTGATTCAAGCGGTATGTATT GGTCAAGTGATCGG TTTATAACGTAGTTGGACTAATCGACCTGAGTTATCTGACCTACTAATCAAGGTCACTGGACATTAGTGTAATATGCTCTGTTTTAGTCATTTCCGCAAGCTATGATTAACGCTGCTCCATTAAACATTCGCCTGCAGTTTTCTTTTCCAAGGGGGATTGGAGCCTAGG]
[-] EMBL CD165106             [                                                                                                                                                                                                                                             GTAGTCCACAGGTGAGTACATGTTCGCCAAGCCTTCTCTGTAAGCTATCTGATTCAAGCGGTATGTATT GGTCAAGTGATCGG TTTATAACGTAGTTGGACTAATCGACCTGAGTTATCTGACCTACTAATCAAGGTCACTGGACATTAGTGTAATATGCTCTGTTTTAGTCATTTCCGCAAGCTATGATTAACGCTGCTCCATTAAACATTCGCCTGCAGTTTTCTTTTCCAAGGGGGATTGGAGCCTAGG]




>consensus_8403#1
AGGTGACCGAAGATGGATTCTGGCTAGGTGCACCAAATTGGGTTGAACTACAACTTGCTA
AAGGGTCAGGTTCTGGATTTTCTGTAGTTGATAGTACATAGATTGGTCCATCTGTCGGCA
GACTCGAAAGATCTTTAGGAGAGATGTAAATAATCCTTTTATCAAGCGGAAAACGACTTC
CAGTCATCTTGTTAATTTATGATATATGCGTCAGGCATAGCTTGTCCAAGAGGGATGGTA
ATCCACAGGTGAGTACATGTTCGCCAAGCCTTCTCTGTAAGCTATCTGATTCAAGCGGTA
TGTATTGGTCAAGTGATCGGTTTATAACGTAGTTGGACTAATCGACCTGAGTTATCTGAC
CTACTAATCAAGGTCACTGGACATTAGTGTAATATGCTCTGTTTTAGTCATTTCCGCAAG
CTATGATTAACGCTGCTCCATTAAACATTCGCCTGCAGTTTTCTTTTCCAAGGGGGATTG
GAGCCTAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8403#0      TAAAGGTGGAGGTGGTTTGTACGGATTGAATGTTTGAAAGTACAAAGTTGATGGAACATT 60
consensus_8403#1      ---------------------------------------------AGGTGACCGAAGATG 15
                                                                   ** ***  *** ** 

consensus_8403#0      CGATTGGA--AAGTAGGGAAATTTTGGTAAGGATGAATGTACTGACCAGATGCTGCGAAT 118
consensus_8403#1      GATTCTGGCTAGGTGCACCAAATTGGGTTGAACTACA---ACTTGCTAAAGGGT-CAGGT 71
                         *  *   * **     ** ** ***     *  *   ***  * * * * * *   *

consensus_8403#0      ACATTGGCACTTGGGGGATATAAAGTATGGTTTTGGAAAGCAGATGTTACCCATGAAACT 178
consensus_8403#1      TCTGGATTTTCTGTAGTTGATAGTACATAGATTGGTCCATCTGTCGGCAGACTCGAAAGA 131
                       *         **  *   ***    ** * ** *   * * *  *  *  *  ****  

consensus_8403#0      GGTTGTGAACCGACAAAAGGTGGAAGTTGAAGAGGAGGGCAGAATCCATAAGGAGGAATT 238
consensus_8403#1      TCTTTAGGAGAGATGTAAATAATCCTTTTATCAAGCGGA---AAACGACTTCCAGTCATC 188
                        **  * *  **   **        ** *  * * **    ** * *     **  ** 

consensus_8403#0      AAGTTTGTTGAAACCACAGAAGGAGGATATGGAATGTTAGCGTGATAAGGGACTGAATAC 298
consensus_8403#1      TTGTTAATTTATGATATATGCGTCAGGCATAGCTTGTCCAAGAGGGATGGTAATCCACAG 248
                        ***  ** *    * *   *   *  ** *  ***    * *  * ** * *  * * 

consensus_8403#0      GGGACTAATGTGTTATTATAATAATTTGAGCTGTTGGTAGACGAAGTTGAAGCTGAACCA 358
consensus_8403#1      GTGAGTA-CATGTTCGCCAAGCCTTCT---CTGTAAGCTATCTGA-TTCAAGCGG---TA 300
                      * ** **   ****     *    * *   ****  *    *  * ** **** *    *

consensus_8403#0      AACGTTGAACAGGTGACCGAAGATGGATTCTGGCTAGGTGCACCAAATTGGGTTGAACTA 418
consensus_8403#1      TGTATTGGTCAAGTGATCGGTT-TATAACGTAGTTGGACTAATCGACCTGAGTTA---TC 356
                          ***  ** **** **    *  *   * * * *    * * *  ** ***    * 

consensus_8403#0      CAACTTGCTAA--AGGGTCAGGTTCTGGATTTTC-TGTAGTTGATAGTACATAGATTGGT 475
consensus_8403#1      TGACCTACTAATCAAGGTCA----CTGGACATTAGTGTAATATGCTCTGTTTTAGTCATT 412
                        ** * ****  * *****    *****  **  **** *      *   *   *   *

consensus_8403#0      CCATCTGTCGGCAGACTCGAAAGATCTTTAGGAGAGATGTAAATAATCCTTTTATCAAGC 535
consensus_8403#1      TCCGCAAGCTATGATTAACGCTGCTCCATTAAACATTCGCCTGCAGTTTTCTTTTCCAAG 472
                       *  *   *             * **  *   * *   *     * *  * ** ** *  

consensus_8403#0      GGAAAACGACTTCCAGTCATGTCAAGTCACGATTGACTATGATCACCACTACAGG 590
consensus_8403#1      GGGGATTGGAGCCTAGG-------------------------------------- 489
                      **  *  *    * **