cluster # 8406

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Schistosoma mansoni
cluster # 8406 cluster # 8406 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8406#0 length = 804 sequences # 5

consensus_8406#1 length = 126 sequences # 1

consensusID : consensus_8406#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 804
fasta sequence

                              [AGCGGTATATATAAAAAGGTGGTTTGTGGGCTTGCAATTTCCGAGAATGTTTTACACACCGGAAGAAATCGAGGCTGTCAATGTACCAAATATACAGAATCTGCTACAGCTAGATCCCTGGTTAGAACCTTATAAACATGAGATCAAACGCCGATATAAATGCTTTTTAGATCATATGAAGTGGATAAACGATGTGTGTGGTTTAGAAGAGTTTACTCAGGGCTACAAGGAATTTGGGGTTCATGTACGTGATGATGGATCAATATACTGTAAAGAATGGGCTCCAGGAGCGAAAGAAATGTACTTGAGGGGAGATTTTAATGATTGGCAGGAATTTACTCATCCTTTCAAGAATGTGGGTTTTGGGAAATGGGAGTTAACAATACCATCTGCTAATGGTTCACCTGTGATAAATCATCTTTCGAAAATCAAACTTTTAGTGGTCGCTCAAGATGGTCGTCGACTGGATAGATTGAGTCCATGGGCTCCATATGTTAAATGCTTTGGGGGGAATATCATTTATGACCAATTATTGTACAATCCCCCTGAGAGATACCAACTTAAATATCCACATCCTCCACGGCCTAAAAGCCTTCGAATTTACGAGTGTCACATTGGTATTTCGTCATCTGAACCAGTTGTCGCATCTTATTCTCATTTCAAGGACAATATTCTTCCCCGAATTAAAGACCTAGGTTATAACGCAATTCAGATAATGGCGCTAATGGAACATGCTTACTATGCTTCGTTCGGATACCAGGTGACTAGCTTCTTTGCTGCCTCCAGTCGCTTTGGCACTCCAGA]

[-] EMBL CD188942             [AGCGGTATATATAAAAAGGTGGTTTGTGGGCTTGCAATTTCCGAGAATGTTTTACACACCGGAAGAAATCGAGGCTGTCAATGTACCAAATATACAGAATCTGCTACAGCTAGATCCCTGGTTAGAACCTTATAAACATGAGATCTAACGCCGATATAAATGCTTTTTAGATCATATGAAGTGGATAAACGATGTGTGTGGTTTAGAAGAGTTTACTCAGGGCTACAAGGAATTTGGGGTTCATGTACGTGATGATGGATCAATATACTGTAAAGAATGGGCTCCAGGAGCGAAAGAAATGTACTTGAGGGGAGATTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD189338             [AGCGGTATATATAAAAAGGTGGTTTGTGGACTTGCAATTTCCGAGAATGTTTTACACACCGGAAGAAATCGAGGCTGTCAATGTTTTTAATATACAGAATCTGCTACAGCTAGATCCCTGGTTAGAACCTTATAAACATGAGATCAAACGCCGATATAAATGCTTTTTAGATCATATGAAGTGGATAAACGATGTGTGTGGTTTAGAAGAGCTTACTCAGGGCTACAAGGAATTTGGGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD187150             [                                                                                                    CTGC ACAGCTAGATCCCTGGTTAGAACCTTATAAACATGAGATCAAACGCCGATATAAATGCTTTTTAGATCATATGAAGTGGATAAACGATGTGTGTGGTTTAGAAGAGTTTACTCAGGGCTACAAGGAATTTGGGGTTCATGTACGTGATGATGGATCAATATACTGTAAAGAATGGGCTCCAGGAGCGAAAGAAATGTACTTGAGGGGAGATTTTAATGATTGGCAGGAATTTACTCATCCTTTCAAGAATGTGGGTTTTGGGAAATGGGAGTTAACAATACCATCTGCTAATGGTTCACCTGTGATAAATCATCTTTCGAAAA                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD189250             [                                                                                                                                                                   TTTTTAGATCATATGAAGTGGATAAACGATGTGTGTGGTTTAGAAGAGTTTACTCAGGGCTACAAGGAATTTGGGGTTCATGTACGTGATGATGGATCAATATACTGTAAAGAATGGGCTCCAGGAGCGAAAGAAATGTACTTGAGGGGAGATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD068405             [                                                                                                                                                                                                                                                                                                                                                                       GTTGTGGGAAATGGGAGTTAACAATACCATCTGCTAATGGTTCACCTGTGATAAATCATCTTTCGAAAATCAAACTTTTAGTGGTCGCTCAAGATGGTCGTCGACTGGATAGATTGAGTCCATGGGCTCCATATGTTAAATGCTTTGGGGGGAATATCATTTATGACCAATTATTGTACAATCCCCCTGAGAGATACCAACTTAAATATCCACATCCTCCACGGCCTAAAAGCCTTCGAATTTACGAGTGTCACATTGGTATTTCGTCATCTGAACCAGTTGTCGCATCTTATTCTCATTTCAAGGACAATATTCTTCCCCGAATTAAAGACCTAGGTTATAACGCAATTCAGATAATGGCGCTAATGGAACATGCTTACTATGCTTCGTTCGGATACCAGGTGACTAGCTTCTTTGCTGCCTCCAGTCGCTTTGGCACTCCAGA]




>consensus_8406#0
AGCGGTATATATAAAAAGGTGGTTTGTGGGCTTGCAATTTCCGAGAATGTTTTACACACC
GGAAGAAATCGAGGCTGTCAATGTACCAAATATACAGAATCTGCTACAGCTAGATCCCTG
GTTAGAACCTTATAAACATGAGATCAAACGCCGATATAAATGCTTTTTAGATCATATGAA
GTGGATAAACGATGTGTGTGGTTTAGAAGAGTTTACTCAGGGCTACAAGGAATTTGGGGT
TCATGTACGTGATGATGGATCAATATACTGTAAAGAATGGGCTCCAGGAGCGAAAGAAAT
GTACTTGAGGGGAGATTTTAATGATTGGCAGGAATTTACTCATCCTTTCAAGAATGTGGG
TTTTGGGAAATGGGAGTTAACAATACCATCTGCTAATGGTTCACCTGTGATAAATCATCT
TTCGAAAATCAAACTTTTAGTGGTCGCTCAAGATGGTCGTCGACTGGATAGATTGAGTCC
ATGGGCTCCATATGTTAAATGCTTTGGGGGGAATATCATTTATGACCAATTATTGTACAA
TCCCCCTGAGAGATACCAACTTAAATATCCACATCCTCCACGGCCTAAAAGCCTTCGAAT
TTACGAGTGTCACATTGGTATTTCGTCATCTGAACCAGTTGTCGCATCTTATTCTCATTT
CAAGGACAATATTCTTCCCCGAATTAAAGACCTAGGTTATAACGCAATTCAGATAATGGC
GCTAATGGAACATGCTTACTATGCTTCGTTCGGATACCAGGTGACTAGCTTCTTTGCTGC
CTCCAGTCGCTTTGGCACTCCAGA

consensusID : consensus_8406#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 126
fasta sequence

                              [TGTGGATATTTAAGTTGGTATCTCTATTAATAAACATTTACAAAATATGAACAACCTCAGGGGGATTGTACAATAATTGGTCATAAATGATATTCCCCCCAAAGCATTTAACATATGGAGCCCATG]

[+] EMBL CD181969             [TGTGGATATTTAAGTTGGTATCTCTATTAATAAACATTTACAAAATATGAACAACCTCAGGGGGATTGTACAATAATTGGTCATAAATGATATTCCCCCCAAAGCATTTAACATATGGAGCCCATG]




>consensus_8406#1
TGTGGATATTTAAGTTGGTATCTCTATTAATAAACATTTACAAAATATGAACAACCTCAG
GGGGATTGTACAATAATTGGTCATAAATGATATTCCCCCCAAAGCATTTAACATATGGAG
CCCATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8406#0      AGCGGTATATATAAAAAGGTGGTTTGTGGGCTTGCAATTTCCGAGAATGTTTTACACACC 60
consensus_8406#1      ------------------------------------------------------------
                                                                                  

consensus_8406#0      GGAAGAAATCGAGGCTGTCAATGTACCAAATATACAGAATCTGCTACAGCTAGATCCCTG 120
consensus_8406#1      ------------------------------------------------------------
                                                                                  

consensus_8406#0      GTTAGAACCTTATAAACATGAGATCAAACGCCGATATAAATGCTTTTTAGATCATATGAA 180
consensus_8406#1      ------------------------------------------------------------
                                                                                  

consensus_8406#0      GTGGATAAACGATGTGTGTGGTTTAGAAGAGTTTACTCAGGGCTACAAGGAATTTGGGGT 240
consensus_8406#1      ------------------------------------------------------------
                                                                                  

consensus_8406#0      TCATGTACGTGATGATGGATCAATATACTGTAAAGAATGGGCTCCAGGAGCGAAAGAAAT 300
consensus_8406#1      ------------------------------------------------------------
                                                                                  

consensus_8406#0      GTACTTGAGGGGAGATTTTAATGATTGGCAGGAATTTACTCATCCTTTCAAGAATGTGGG 360
consensus_8406#1      ------------------------------------------------------------
                                                                                  

consensus_8406#0      TTTTGGGAAATGGGAGTTAACAATACCATCTGCTAATGGTTCACCTGTGATAAATCATCT 420
consensus_8406#1      --TGTGGATATTTAAGTTGGTATCTCTAT-TAATAAACATTTACAAAATATGAACAACCT 57
                        *  *** **   ****   *   * ** *  ***   ** **     ** **  * **

consensus_8406#0      TTCGAAAATCAAACTTTTAGTGGTCGCTCAAGATGGTCGTCGACTGGATAGATTGAGTCC 480
consensus_8406#1      CAGGGGGATTGTACAATAATTGGTCAT---AAATGATATTCCCCCCAAAGCATTTAACAT 114
                         *   **   **  * * *****     * *** *  **  *   *   *** *    

consensus_8406#0      ATGGGCTCCATATGTTAAATGCTTTGGGGGGAATATCATTTATGACCAATTATTGTACAA 540
consensus_8406#1      ATGGAGCCCATG------------------------------------------------ 126
                      ****   ****                                                 

consensus_8406#0      TCCCCCTGAGAGATACCAACTTAAATATCCACATCCTCCACGGCCTAAAAGCCTTCGAAT 600
consensus_8406#1      ------------------------------------------------------------
                                                                                  

consensus_8406#0      TTACGAGTGTCACATTGGTATTTCGTCATCTGAACCAGTTGTCGCATCTTATTCTCATTT 660
consensus_8406#1      ------------------------------------------------------------
                                                                                  

consensus_8406#0      CAAGGACAATATTCTTCCCCGAATTAAAGACCTAGGTTATAACGCAATTCAGATAATGGC 720
consensus_8406#1      ------------------------------------------------------------
                                                                                  

consensus_8406#0      GCTAATGGAACATGCTTACTATGCTTCGTTCGGATACCAGGTGACTAGCTTCTTTGCTGC 780
consensus_8406#1      ------------------------------------------------------------
                                                                                  

consensus_8406#0      CTCCAGTCGCTTTGGCACTCCAGA 804
consensus_8406#1      ------------------------