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Schistosoma mansoni
cluster # 8412 cluster # 8412       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8412#0 length = 1075 sequences # 2  
consensus_8412#1 length = 780 sequences # 4  

consensusID : consensus_8412#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1075
fasta sequence
                              [TGCACTACTGACAAAGTAACAATAACGTTTTGTTCTGCAGTTTTATCTTTGTGATCGTGTAAACAAATACGATGGCAATCCCAGCACTGTATGTTAAACACTATGAGATGGGTCTGATTTTGTGGTTGTTTTGCATATTCAGTATACAAATAACATAAAAATTTACTAACTGACTACACAGGTCGATTTAATGGATGATAATTCTCTCGTTCTTAACTTTGTAATTCCATATGGTTATATACGTTCATGTTCTCGGCTAGTTTGGTTTCGATTACATTTGTGGGTTTGTTTTATTTAAAGTTTATTTTTATTTTTACCCATCCGGTCATAATACAGAGTTTTTTTTCAATTACAGTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCTGACCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCCAAGAGATACATCTCAGAGGCAGTTTGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTGTCATGTGAAACCTTTTCTGGTGACTCAACANAACAATCCCCCGTTTCTCTGGATCGTAATAATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACTCTGTTGTCAGTAGAATTATTTAGT-ATGATGAGTCATTTGTACCTCACATGAAGAAGGTTAAAGTTAAGAAAGAGAAAAAGCATAAGAAGCATAAACACAAACATTTTGACAAAAGGGCTTGCATTCAAATCGACGATTCAACTAATCAACTATTCATGAATCCAGGTGACACTGTATCTTGTTCTAATGTTGAGGTATCTGATAAGAAGCATGCAAAGAAACACAAGAAACATAAGAAACATAAACATGGAAATAAAGAAGACAAGAAAGAAGTTAACTCAGATGTAAATTCATCAGTACAGTGTATAAGTCTAGATAAAATCAATGTAAATGAGCTTAGCTAATTAACTCTTCCAGTTCTTTCCATGTACATAGGCTTTGAAGAACATGTAAATAATGTTTAGATTATAAAGATCAAGTTTACGAATTTACTGGACTTCATACTTTTTAATAAATTATT]

[+] EMBL CD079114             [TGCACTACTGACAAAGTAACAATAACGTTTTGTTCTGCAGTTTTATCTTTGTGATCGTGTAAACAAATACGATGGCAATCCCAGCACTGTATGTTAAACACTATGAGATGGGTCTGATTTTGTGGTTGTTTTGCATATTCAGTATACAAATAACATAAAAATTTACTAACTGACTACACAGGTCGATTTAATGGATGATAATTCTCTCGTTCTTAACTTTGTAATTCCATATGGTTATATACGTTCATGTTCTCGGCTAGTTTGGTTTCGATTACATTTGTGGGTTTGTTTTATTTAAAGTTTATTTTTATTTTTACCCATCCGGTCATAATACAGAGTTTTTTTTCAATTACAGTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCTGACCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCCAAGAGATACATCTCAGAGGCAGTTTGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTGTCATGTGAAACCTTTTCTGGTGACTCAACANAACAATCCCCCGTTTCTCTGGATCGTAATAATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACTCTGTTGTCAGTAGAATTATTTAGT ATGAT                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD073567             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TACTTTGTCATGTGAAACCTTTTCTGGTGACTCAACAAAACAATCCCCCGTTTCTCTGGATCGTAATAATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACTCTGTTGTCAGTAGAATTA TTAGTAATGATGAGTCATTTGTACCTCACATGAAGAAGGTTAAAGTTAAGAAAGAGAAAAAGCATAAGAAGCATAAACACAAACATTTTGACAAAAGGGCTTGCATTCAAATCGACGATTCAACTAATCAACTATTCATGAATCCAGGTGACACTGTATCTTGTTCTAATGTTGAGGTATCTGATAAGAAGCATGCAAAGAAACACAAGAAACATAAGAAACATAAACATGGAAATAAAGAAGACAAGAAAGAAGTTAACTCAGATGTAAATTCATCAGTACAGTGTATAAGTCTAGATAAAATCAATGTAAATGAGCTTAGCTAATTAACTCTTCCAGTTCTTTCCATGTACATAGGCTTTGAAGAACATGTAAATAATGTTTAGATTATAAAGATCAAGTTTACGAATTTACTGGACTTCATACTTTTTAATAAATTATT]


>consensus_8412#0 TGCACTACTGACAAAGTAACAATAACGTTTTGTTCTGCAGTTTTATCTTTGTGATCGTGT AAACAAATACGATGGCAATCCCAGCACTGTATGTTAAACACTATGAGATGGGTCTGATTT TGTGGTTGTTTTGCATATTCAGTATACAAATAACATAAAAATTTACTAACTGACTACACA GGTCGATTTAATGGATGATAATTCTCTCGTTCTTAACTTTGTAATTCCATATGGTTATAT ACGTTCATGTTCTCGGCTAGTTTGGTTTCGATTACATTTGTGGGTTTGTTTTATTTAAAG TTTATTTTTATTTTTACCCATCCGGTCATAATACAGAGTTTTTTTTCAATTACAGTCGAA CACCTATGTCTGTTGTCCCTCAGTATGATGTCTCTGACCCAGAATCGATTGGACCTAGAA ATCCTTCTCTGCCAAGAGATACATCTCAGAGGCAGTTTGATATGCCTGGACCAAATCAAG TAATAGATAATATCAATCGTGTTTCACATACTTTGTCATGTGAAACCTTTTCTGGTGACT CAACANAACAATCCCCCGTTTCTCTGGATCGTAATAATGATCTCATCTGTAAAGATGAAT GTTTAGTAGGACACTCTGTTGTCAGTAGAATTATTTAGTATGATGAGTCATTTGTACCTC ACATGAAGAAGGTTAAAGTTAAGAAAGAGAAAAAGCATAAGAAGCATAAACACAAACATT TTGACAAAAGGGCTTGCATTCAAATCGACGATTCAACTAATCAACTATTCATGAATCCAG GTGACACTGTATCTTGTTCTAATGTTGAGGTATCTGATAAGAAGCATGCAAAGAAACACA AGAAACATAAGAAACATAAACATGGAAATAAAGAAGACAAGAAAGAAGTTAACTCAGATG TAAATTCATCAGTACAGTGTATAAGTCTAGATAAAATCAATGTAAATGAGCTTAGCTAAT TAACTCTTCCAGTTCTTTCCATGTACATAGGCTTTGAAGAACATGTAAATAATGTTTAGA TTATAAAGATCAAGTTTACGAATTTACTGGACTTCATACTTTTTAATAAATTATT



consensusID : consensus_8412#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 780
fasta sequence
                              [TCGAGGCGAACGACTTTATGGAGATTCTTCTCACCATCGACGTGGTTATGAGAGAGAAGAGCGAGAGAGACGATCCCGATACTATTCACCTGTTAATTACGAGAGTGAACGTAGTCGTTGCCGACACCGTTACGCCGACGGATATGAATCTCATCATGACAGAAGTGGGACTCATCGTCATCACTACCGCCCTACTTTCTTTCAAGATCTTGACGACCGGAGACGTCATTATTCACGAGGCCATCCGCATAGTCCCGCACACCGGTCCAGGCGGTCACCAAGACAGTCACCGTCAAGTAAAGATGGTTGGTATGGGTACAAAGGTCGGGGATGTAGCCTTTCTCCTGTCACACGTGAACCCTCAGATCCACGCAGATGTCGGGAACCACATGTTGGTAGTGGACATTATGACGAATTCCTCAGTAGACGTAAAAGAAGTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCTGACCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCCAAGAGATACATCTCAGAGGCAGTTTGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTGTCATGTGAAACCTTTTCTGGTGACTCAACAAAACAATCCCCCGTTTCTCTGGATCGTAATAATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACTCTGTTGTCAGTAGAATTATTAGTAATGATGAGTCATTTGTACCTCACATGAAGAAGGTTAAAGTTAAGAAAGAGAAAAAGCA]

[+] EMBL CD188509             [TCGAGGCGAACGACTTTATGGAGATTCTTCTCACCATCGACGTGGTTATGAGAGAGAAGAGCGAGAGAGACGATCCCGATACTATTCACCTGTTAATTACGAGAGTGAACGTAGTCGTTGCCGACACCGTTACGCCGATGGATATGAATCTCATCATGACAGAAGTGGGACTCATCGTCATCACTACCGCCCTACTTTCTTTCAAGATCTTGACGACCGGAGACGTCATTATTCACGAGGCCATCCGCATAGTCCCGCACACCGGTCCAGGCGGTCACCAGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD155997             [                                                                                                                                       CGACGGATATGAATCTCATCATGACAGAAGTGGGACTCATCGTCATCACTACCGCCCTACTTTCTTTCAAGATCTTGACGACCGGAGACGTCATTATTCACGAGGCCATCCGCATAGTCCCGCACACCGGTCCAGGCGGTCACCAAGACAGTCACCGTCAAGTAAAGATGGTTGGTATGGGTACAAAGGTCGGGGATGTAGCCTTTCTCCTGTCACACGTGAACCCTCAGATCCACGCAGATGTCGGGAACCACATGTTGGTAGTGGACATTATGACGAATTCCTCAGTAGACGTAAAAGAAGTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCTGACCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCCAAGAGATACATCTCAGTGGCAGTTTGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTGTCATGTGGAACCTTTTCTGGTGACTCAACAAAACAATCCCCCGTTTCTCTGGATCGTAATAATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACT                                                                                  ]
[-] EMBL CD156112             [                                                                                                                                       CGACGGATATGAATCTCATCATGACAGAAGTGGGACTCATCGTCATCACTACCGCCCTACTTTCTTTCAAGATCTTGACGACCGGAGACGTCATTATTCACGAGGCCATCCGCATAGTCCCGCACACCGGTCCAGGCGGTCACCAAGACAGTCACCGTCAAGTAAAGATGGTTGGTATGGGTACAAAGGTCGGGGATGTAGCCTTTCTCCTGTCACACGTGAACCCTCAGATCCACGCAGATGTCGGGAACCACATGTTGGTAGTGGACATTATGACGAATTCCTCAGTAGACGTAAAAGAAGTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCTGACCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCCAAGAGATACATCTCAGAGGCAGTTTGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTGTCATGTGAAACCTTTTCTGGTGACTCAACAAAACAATCCCCCGTTTCTCTGGATCGTAATAATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACT                                                                                  ]
[-] EMBL CD061687             [                                                                                                                                                                                                                                                                                                                                                                                           CGGGAATCACATGTTGGTAGTGGACATTATGACGAATTCCTCAGTAGACGTAAAAGAAGTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCTGACCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCTAAGAGATACATCTCAGAGGCAGTTTGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTGTCATGTGAAACTTTTTCTGGTGACTTAACAAAACAATCCCCCGTTTCTCTGGATCGTAATAATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACTCTGTTGTCAGTAGAATTATTAGTAATGATGAGTCATTTGTACCTCACATGAAGAAGGTTAAAGTTAAGAAAGAGAAAAAGCA]


>consensus_8412#1 TCGAGGCGAACGACTTTATGGAGATTCTTCTCACCATCGACGTGGTTATGAGAGAGAAGA GCGAGAGAGACGATCCCGATACTATTCACCTGTTAATTACGAGAGTGAACGTAGTCGTTG CCGACACCGTTACGCCGACGGATATGAATCTCATCATGACAGAAGTGGGACTCATCGTCA TCACTACCGCCCTACTTTCTTTCAAGATCTTGACGACCGGAGACGTCATTATTCACGAGG CCATCCGCATAGTCCCGCACACCGGTCCAGGCGGTCACCAAGACAGTCACCGTCAAGTAA AGATGGTTGGTATGGGTACAAAGGTCGGGGATGTAGCCTTTCTCCTGTCACACGTGAACC CTCAGATCCACGCAGATGTCGGGAACCACATGTTGGTAGTGGACATTATGACGAATTCCT CAGTAGACGTAAAAGAAGTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCTGA CCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCCAAGAGATACATCTCAGAGGCAGTT TGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTGTC ATGTGAAACCTTTTCTGGTGACTCAACAAAACAATCCCCCGTTTCTCTGGATCGTAATAA TGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACTCTGTTGTCAGTAGAATTATTAG TAATGATGAGTCATTTGTACCTCACATGAAGAAGGTTAAAGTTAAGAAAGAGAAAAAGCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8412#0      -----------------------------------------------------------T 1
consensus_8412#1      TCGAGGCGAACGACTTTATGGAGATTCTTCTCACCATCGACGTGGTTATGAGAGAGAAGA 60
                                                                                  

consensus_8412#0      GCACTACTGACAA----AGTAACAATAACGTTTTGTTCTGCAGTTTTATCTTTGTGATCG 57
consensus_8412#1      GCGAGAGAGACGATCCCGATACTATTCACCTGTTAATTACGAGAGTGAACGTAGTCGTTG 120
                      **   *  *** *      **  * * ** * **  *    **  * * * * **  * *

consensus_8412#0      TGTAAACAAATACGATGGC-------AATCCCAGCACTGTATGTTAAACACTATGAGATG 110
consensus_8412#1      CCGACACCGTTACGCCGACGGATATGAATCTCATCATGACAGAAGTGGGACTCATCGTCA 180
                         * **   ****  * *       **** ** **    *        ***    *   

consensus_8412#0      GGTCTGATTTTGTGGTTGTTTTGCATATTCAGTATACAAATAACATAAAAATTTACTAA- 169
consensus_8412#1      TCACTACCGCCCTACTTTCTTTCAAGATCTTGACGACCGGAGACGTCATTATTCACGAGG 240
                         **       *  **  ***  * **   *   **     ** * *  *** ** *  

consensus_8412#0      CTGACTACACAGGTCGATTTAATGGAT--GATAATTCTCTCGTTCTTAACTTTGTAATTC 227
consensus_8412#1      CCATCCGCATAGTCCCGCACACCGGTCCAGGCGGTCACCAAGACAGTCACCGT-CAAGTA 299
                      *   *  ** **  *     *  **    *    *   *  *    * **  *  ** * 

consensus_8412#0      CATATGGTTA-TATACGTTCATGTTCTCGGC---TAGTTTGGTTTCGATTACATTTGTGG 283
consensus_8412#1      AAGATGGTTGGTATGGGTACAAAGGTCGGGGATGTAGCCTTTCTCCTGTCACACGTGAAC 359
                       * ******  ***  ** **       **    ***  *   * *  * ***  **   

consensus_8412#0      GTTT-GTTTTATTTAAA-GTTTATTTTTATTTTTACCCATCCGGTCATAATACAGAGTTT 341
consensus_8412#1      CCTCAGATCCACGCAGATGTCGGGAACCACATGTTGGTAGT-GGACATTATGACGAATTC 418
                        *  * *  *   * * **        *  * *    *   ** *** **   ** ** 

consensus_8412#0      TTTTTCAATTACA------GTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCT 395
consensus_8412#1      CTCAGTAGACGTAAAAGAAGTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCT 478
                       *    *     *      *****************************************

consensus_8412#0      GACCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCCAAGAGATACATCTCAGAGGCAG 455
consensus_8412#1      GACCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCCAAGAGATACATCTCAGAGGCAG 538
                      ************************************************************

consensus_8412#0      TTTGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTG 515
consensus_8412#1      TTTGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTG 598
                      ************************************************************

consensus_8412#0      TCATGTGAAACCTTTTCTGGTGACTCAACANAACAATCCCCCGTTTCTCTGGATCGTAAT 575
consensus_8412#1      TCATGTGAAACCTTTTCTGGTGACTCAACAAAACAATCCCCCGTTTCTCTGGATCGTAAT 658
                      ****************************** *****************************

consensus_8412#0      AATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACTCTGTTGTCAGTAGAATTATT 635
consensus_8412#1      AATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACTCTGTTGTCAGTAGAATTATT 718
                      ************************************************************

consensus_8412#0      TAGTATGATGAGTCATTTGTACCTCACATGAAGAAGGTTAAAGTTAAGAAAGAGAAAAAG 695
consensus_8412#1      AGTAATGATGAGTCATTTGTACCTCACATGAAGAAGGTTAAAGTTAAGAAAGAGAAAAAG 778
                          ********************************************************

consensus_8412#0      CATAAGAAGCATAAACACAAACATTTTGACAAAAGGGCTTGCATTCAAATCGACGATTCA 755
consensus_8412#1      CA---------------------------------------------------------- 780
                      **                                                          

consensus_8412#0      ACTAATCAACTATTCATGAATCCAGGTGACACTGTATCTTGTTCTAATGTTGAGGTATCT 815
consensus_8412#1      ------------------------------------------------------------
                                                                                  

consensus_8412#0      GATAAGAAGCATGCAAAGAAACACAAGAAACATAAGAAACATAAACATGGAAATAAAGAA 875
consensus_8412#1      ------------------------------------------------------------
                                                                                  

consensus_8412#0      GACAAGAAAGAAGTTAACTCAGATGTAAATTCATCAGTACAGTGTATAAGTCTAGATAAA 935
consensus_8412#1      ------------------------------------------------------------
                                                                                  

consensus_8412#0      ATCAATGTAAATGAGCTTAGCTAATTAACTCTTCCAGTTCTTTCCATGTACATAGGCTTT 995
consensus_8412#1      ------------------------------------------------------------
                                                                                  

consensus_8412#0      GAAGAACATGTAAATAATGTTTAGATTATAAAGATCAAGTTTACGAATTTACTGGACTTC 1055
consensus_8412#1      ------------------------------------------------------------
                                                                                  

consensus_8412#0      ATACTTTTTAATAAATTATT 1075
consensus_8412#1      --------------------
                                          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)