These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8412#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1075 fasta sequence [TGCACTACTGACAAAGTAACAATAACGTTTTGTTCTGCAGTTTTATCTTTGTGATCGTGTAAACAAATACGATGGCAATCCCAGCACTGTATGTTAAACACTATGAGATGGGTCTGATTTTGTGGTTGTTTTGCATATTCAGTATACAAATAACATAAAAATTTACTAACTGACTACACAGGTCGATTTAATGGATGATAATTCTCTCGTTCTTAACTTTGTAATTCCATATGGTTATATACGTTCATGTTCTCGGCTAGTTTGGTTTCGATTACATTTGTGGGTTTGTTTTATTTAAAGTTTATTTTTATTTTTACCCATCCGGTCATAATACAGAGTTTTTTTTCAATTACAGTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCTGACCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCCAAGAGATACATCTCAGAGGCAGTTTGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTGTCATGTGAAACCTTTTCTGGTGACTCAACANAACAATCCCCCGTTTCTCTGGATCGTAATAATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACTCTGTTGTCAGTAGAATTATTTAGT-ATGATGAGTCATTTGTACCTCACATGAAGAAGGTTAAAGTTAAGAAAGAGAAAAAGCATAAGAAGCATAAACACAAACATTTTGACAAAAGGGCTTGCATTCAAATCGACGATTCAACTAATCAACTATTCATGAATCCAGGTGACACTGTATCTTGTTCTAATGTTGAGGTATCTGATAAGAAGCATGCAAAGAAACACAAGAAACATAAGAAACATAAACATGGAAATAAAGAAGACAAGAAAGAAGTTAACTCAGATGTAAATTCATCAGTACAGTGTATAAGTCTAGATAAAATCAATGTAAATGAGCTTAGCTAATTAACTCTTCCAGTTCTTTCCATGTACATAGGCTTTGAAGAACATGTAAATAATGTTTAGATTATAAAGATCAAGTTTACGAATTTACTGGACTTCATACTTTTTAATAAATTATT] [+] EMBL CD079114 [TGCACTACTGACAAAGTAACAATAACGTTTTGTTCTGCAGTTTTATCTTTGTGATCGTGTAAACAAATACGATGGCAATCCCAGCACTGTATGTTAAACACTATGAGATGGGTCTGATTTTGTGGTTGTTTTGCATATTCAGTATACAAATAACATAAAAATTTACTAACTGACTACACAGGTCGATTTAATGGATGATAATTCTCTCGTTCTTAACTTTGTAATTCCATATGGTTATATACGTTCATGTTCTCGGCTAGTTTGGTTTCGATTACATTTGTGGGTTTGTTTTATTTAAAGTTTATTTTTATTTTTACCCATCCGGTCATAATACAGAGTTTTTTTTCAATTACAGTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCTGACCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCCAAGAGATACATCTCAGAGGCAGTTTGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTGTCATGTGAAACCTTTTCTGGTGACTCAACANAACAATCCCCCGTTTCTCTGGATCGTAATAATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACTCTGTTGTCAGTAGAATTATTTAGT ATGAT ] [-] EMBL CD073567 [ TACTTTGTCATGTGAAACCTTTTCTGGTGACTCAACAAAACAATCCCCCGTTTCTCTGGATCGTAATAATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACTCTGTTGTCAGTAGAATTA TTAGTAATGATGAGTCATTTGTACCTCACATGAAGAAGGTTAAAGTTAAGAAAGAGAAAAAGCATAAGAAGCATAAACACAAACATTTTGACAAAAGGGCTTGCATTCAAATCGACGATTCAACTAATCAACTATTCATGAATCCAGGTGACACTGTATCTTGTTCTAATGTTGAGGTATCTGATAAGAAGCATGCAAAGAAACACAAGAAACATAAGAAACATAAACATGGAAATAAAGAAGACAAGAAAGAAGTTAACTCAGATGTAAATTCATCAGTACAGTGTATAAGTCTAGATAAAATCAATGTAAATGAGCTTAGCTAATTAACTCTTCCAGTTCTTTCCATGTACATAGGCTTTGAAGAACATGTAAATAATGTTTAGATTATAAAGATCAAGTTTACGAATTTACTGGACTTCATACTTTTTAATAAATTATT] consensusID : consensus_8412#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 780 fasta sequence [TCGAGGCGAACGACTTTATGGAGATTCTTCTCACCATCGACGTGGTTATGAGAGAGAAGAGCGAGAGAGACGATCCCGATACTATTCACCTGTTAATTACGAGAGTGAACGTAGTCGTTGCCGACACCGTTACGCCGACGGATATGAATCTCATCATGACAGAAGTGGGACTCATCGTCATCACTACCGCCCTACTTTCTTTCAAGATCTTGACGACCGGAGACGTCATTATTCACGAGGCCATCCGCATAGTCCCGCACACCGGTCCAGGCGGTCACCAAGACAGTCACCGTCAAGTAAAGATGGTTGGTATGGGTACAAAGGTCGGGGATGTAGCCTTTCTCCTGTCACACGTGAACCCTCAGATCCACGCAGATGTCGGGAACCACATGTTGGTAGTGGACATTATGACGAATTCCTCAGTAGACGTAAAAGAAGTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCTGACCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCCAAGAGATACATCTCAGAGGCAGTTTGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTGTCATGTGAAACCTTTTCTGGTGACTCAACAAAACAATCCCCCGTTTCTCTGGATCGTAATAATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACTCTGTTGTCAGTAGAATTATTAGTAATGATGAGTCATTTGTACCTCACATGAAGAAGGTTAAAGTTAAGAAAGAGAAAAAGCA] [+] EMBL CD188509 [TCGAGGCGAACGACTTTATGGAGATTCTTCTCACCATCGACGTGGTTATGAGAGAGAAGAGCGAGAGAGACGATCCCGATACTATTCACCTGTTAATTACGAGAGTGAACGTAGTCGTTGCCGACACCGTTACGCCGATGGATATGAATCTCATCATGACAGAAGTGGGACTCATCGTCATCACTACCGCCCTACTTTCTTTCAAGATCTTGACGACCGGAGACGTCATTATTCACGAGGCCATCCGCATAGTCCCGCACACCGGTCCAGGCGGTCACCAGGA ] [-] EMBL CD155997 [ CGACGGATATGAATCTCATCATGACAGAAGTGGGACTCATCGTCATCACTACCGCCCTACTTTCTTTCAAGATCTTGACGACCGGAGACGTCATTATTCACGAGGCCATCCGCATAGTCCCGCACACCGGTCCAGGCGGTCACCAAGACAGTCACCGTCAAGTAAAGATGGTTGGTATGGGTACAAAGGTCGGGGATGTAGCCTTTCTCCTGTCACACGTGAACCCTCAGATCCACGCAGATGTCGGGAACCACATGTTGGTAGTGGACATTATGACGAATTCCTCAGTAGACGTAAAAGAAGTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCTGACCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCCAAGAGATACATCTCAGTGGCAGTTTGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTGTCATGTGGAACCTTTTCTGGTGACTCAACAAAACAATCCCCCGTTTCTCTGGATCGTAATAATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACT ] [-] EMBL CD156112 [ CGACGGATATGAATCTCATCATGACAGAAGTGGGACTCATCGTCATCACTACCGCCCTACTTTCTTTCAAGATCTTGACGACCGGAGACGTCATTATTCACGAGGCCATCCGCATAGTCCCGCACACCGGTCCAGGCGGTCACCAAGACAGTCACCGTCAAGTAAAGATGGTTGGTATGGGTACAAAGGTCGGGGATGTAGCCTTTCTCCTGTCACACGTGAACCCTCAGATCCACGCAGATGTCGGGAACCACATGTTGGTAGTGGACATTATGACGAATTCCTCAGTAGACGTAAAAGAAGTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCTGACCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCCAAGAGATACATCTCAGAGGCAGTTTGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTGTCATGTGAAACCTTTTCTGGTGACTCAACAAAACAATCCCCCGTTTCTCTGGATCGTAATAATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACT ] [-] EMBL CD061687 [ CGGGAATCACATGTTGGTAGTGGACATTATGACGAATTCCTCAGTAGACGTAAAAGAAGTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCTGACCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCTAAGAGATACATCTCAGAGGCAGTTTGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTGTCATGTGAAACTTTTTCTGGTGACTTAACAAAACAATCCCCCGTTTCTCTGGATCGTAATAATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACTCTGTTGTCAGTAGAATTATTAGTAATGATGAGTCATTTGTACCTCACATGAAGAAGGTTAAAGTTAAGAAAGAGAAAAAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8412#0 -----------------------------------------------------------T 1 consensus_8412#1 TCGAGGCGAACGACTTTATGGAGATTCTTCTCACCATCGACGTGGTTATGAGAGAGAAGA 60 consensus_8412#0 GCACTACTGACAA----AGTAACAATAACGTTTTGTTCTGCAGTTTTATCTTTGTGATCG 57 consensus_8412#1 GCGAGAGAGACGATCCCGATACTATTCACCTGTTAATTACGAGAGTGAACGTAGTCGTTG 120 ** * *** * ** * * ** * ** * ** * * * * ** * * consensus_8412#0 TGTAAACAAATACGATGGC-------AATCCCAGCACTGTATGTTAAACACTATGAGATG 110 consensus_8412#1 CCGACACCGTTACGCCGACGGATATGAATCTCATCATGACAGAAGTGGGACTCATCGTCA 180 * ** **** * * **** ** ** * *** * consensus_8412#0 GGTCTGATTTTGTGGTTGTTTTGCATATTCAGTATACAAATAACATAAAAATTTACTAA- 169 consensus_8412#1 TCACTACCGCCCTACTTTCTTTCAAGATCTTGACGACCGGAGACGTCATTATTCACGAGG 240 ** * ** *** * ** * ** ** * * *** ** * consensus_8412#0 CTGACTACACAGGTCGATTTAATGGAT--GATAATTCTCTCGTTCTTAACTTTGTAATTC 227 consensus_8412#1 CCATCCGCATAGTCCCGCACACCGGTCCAGGCGGTCACCAAGACAGTCACCGT-CAAGTA 299 * * ** ** * * ** * * * * * ** * ** * consensus_8412#0 CATATGGTTA-TATACGTTCATGTTCTCGGC---TAGTTTGGTTTCGATTACATTTGTGG 283 consensus_8412#1 AAGATGGTTGGTATGGGTACAAAGGTCGGGGATGTAGCCTTTCTCCTGTCACACGTGAAC 359 * ****** *** ** ** ** *** * * * * *** ** consensus_8412#0 GTTT-GTTTTATTTAAA-GTTTATTTTTATTTTTACCCATCCGGTCATAATACAGAGTTT 341 consensus_8412#1 CCTCAGATCCACGCAGATGTCGGGAACCACATGTTGGTAGT-GGACATTATGACGAATTC 418 * * * * * * ** * * * * ** *** ** ** ** consensus_8412#0 TTTTTCAATTACA------GTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCT 395 consensus_8412#1 CTCAGTAGACGTAAAAGAAGTCGAACACCTATGTCTGTTGTCCCTCAGTATGATGTCTCT 478 * * * ***************************************** consensus_8412#0 GACCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCCAAGAGATACATCTCAGAGGCAG 455 consensus_8412#1 GACCCAGAATCGATTGGACCTAGAAATCCTTCTCTGCCAAGAGATACATCTCAGAGGCAG 538 ************************************************************ consensus_8412#0 TTTGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTG 515 consensus_8412#1 TTTGATATGCCTGGACCAAATCAAGTAATAGATAATATCAATCGTGTTTCACATACTTTG 598 ************************************************************ consensus_8412#0 TCATGTGAAACCTTTTCTGGTGACTCAACANAACAATCCCCCGTTTCTCTGGATCGTAAT 575 consensus_8412#1 TCATGTGAAACCTTTTCTGGTGACTCAACAAAACAATCCCCCGTTTCTCTGGATCGTAAT 658 ****************************** ***************************** consensus_8412#0 AATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACTCTGTTGTCAGTAGAATTATT 635 consensus_8412#1 AATGATCTCATCTGTAAAGATGAATGTTTAGTAGGACACTCTGTTGTCAGTAGAATTATT 718 ************************************************************ consensus_8412#0 TAGTATGATGAGTCATTTGTACCTCACATGAAGAAGGTTAAAGTTAAGAAAGAGAAAAAG 695 consensus_8412#1 AGTAATGATGAGTCATTTGTACCTCACATGAAGAAGGTTAAAGTTAAGAAAGAGAAAAAG 778 ******************************************************** consensus_8412#0 CATAAGAAGCATAAACACAAACATTTTGACAAAAGGGCTTGCATTCAAATCGACGATTCA 755 consensus_8412#1 CA---------------------------------------------------------- 780 ** consensus_8412#0 ACTAATCAACTATTCATGAATCCAGGTGACACTGTATCTTGTTCTAATGTTGAGGTATCT 815 consensus_8412#1 ------------------------------------------------------------ consensus_8412#0 GATAAGAAGCATGCAAAGAAACACAAGAAACATAAGAAACATAAACATGGAAATAAAGAA 875 consensus_8412#1 ------------------------------------------------------------ consensus_8412#0 GACAAGAAAGAAGTTAACTCAGATGTAAATTCATCAGTACAGTGTATAAGTCTAGATAAA 935 consensus_8412#1 ------------------------------------------------------------ consensus_8412#0 ATCAATGTAAATGAGCTTAGCTAATTAACTCTTCCAGTTCTTTCCATGTACATAGGCTTT 995 consensus_8412#1 ------------------------------------------------------------ consensus_8412#0 GAAGAACATGTAAATAATGTTTAGATTATAAAGATCAAGTTTACGAATTTACTGGACTTC 1055 consensus_8412#1 ------------------------------------------------------------ consensus_8412#0 ATACTTTTTAATAAATTATT 1075 consensus_8412#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||