These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8418#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 826 fasta sequence [TATCGAAGGTTCCTGANAATCTCCCATCCTGTCTAGTGAATTAGCAATAATTTTCCGGGCAGAGGACATCAAAGGAGTATGAAAAGCTCCATTAACTGGTAATCGTTTGGTTCGACGTATTCCAAATTGACCAGCATGATTTTCAATAAAGTCGATTGCCTCTTTATTCCCAGCGATTACTTTGCAATCTGGATATAAATAGTTAGCGACTTTACAACAAGGGTTTTGAATTTTGTGGCGAACCTCGCAATGATTGATAGCTGCTGCTATACCAAGTTTTAACGGGGATCCAGGATTGACGAAAACAGTAATCATTGCTCCAGCCTTCTCATCACAAGCTTTTTGCATAGCTTCTGCTCGGACACGAATAATATGCAGACCTTCTTCATACGTCAGGGCACCCGAAA-ACACTAAAGCACTGATCTCGCCAAGACTAAACCCTGCTGTAACCACGCAATTTTTAATTAACTCTTCATTTTCTTCTCGAAGCTTTACAAGGGCTGCCAAAGAAATTATGAAAGTAGCTGGTTGACAATGAATGGTTTTTGATAATTTTGAAGCAGGACCCTCAAGGCAAGTACGAGGAATATCTGTTCTTAATATTTCATTAGCACATTGAAACATTTGCTTTATCTTTGGTAACTTTATAAGATCTTTGCCCATCCCGACAAAATGAGATCCTTGTCCTGGGAATAAAACTATGGAAGTTTTATGTGGATCATTATCAGTTACACTTAAAAAAGTTTTTCAGTGATACTAAAAATACCTTTTGTCATATAGAGCCCATTTATATCGAGGTTTTGTTAAACATTGTGAATCCCCGGAA] [-] EMBL AW017181 [TATCGAAGGTTCCTGANAATCTCCCATCCTGTCTAGTGAATTAGCAATAATTTTCCGGGCAGAGGACATCAAAGGAGTATGAAAAGCTCCATTAACTGGTAATCGTTTGGTTCGACGTATTCCAAATTGACCAGCATGATTTTCAATAAAGTCGATTGCCTCTTTATTCCCAGCGATTACTTTGCAATCTGGATATAAATAGTTAGCGACTTTACAACAAGGGTTTTGAATTTTGTGGCGAACCTCGCAATGATTGATAGCTGCTGCTATACCAAGTTTTAACGGGGATCCAGGATTGACGAAAACAGTAATCATTGCTCCAGCCTTCTCATCACAAGCTTTTTGCATAGCTTCTGCTCGGACACGAATAATATGCAGACCTTCTTCATACGTCAGGGCACCCGAAA ACACTAAAGCACTGATCTCGCCAAGACTAAACCCTGCTGTAACCACGCAATTTTTAATTAACTCTTCATTTTCTTCTCGAAGCTTTACAAGGGCTGCCAAAGAAATTATGAAAGTAGCTGGTTGACAATGAATGGTTTTTGATAATTTTGAAGCAGGACCCTCAAGGCAAGTAC ] [-] EMBL CD191988 [ GAAAAGCTCCATTAACTGGTAATCGTTTGGTTCGACGTATTCCAAATTGACCAGCATGATTTTCAATAAAGTCGATTGCCTCTTTATTCCCAGCGATTACTTTGCAATCTGGATATAAATAGTTAGCGACTTTACAACAAGGGTTTTGAATTTTGTGGCGAACCTC ] [+] EMBL CD163328 [ TAATATGCAGACCTTCTTCATACGTCAGGGCACCCGAAATACACTAAAGCACTGATCTCGCCAAGACTAAACCCTGGTGTAACCACGCAATTTATAATTAACTCTTCATTTTCTTCTCGAAGCTTTACAAGGGCTGCCAAAGAAATTATGAAAGTAGATGGTTGACAATGAATGGTTTTTGATAATTTTGAAGCAGGACCCTCAAGGCAAGTACGAGGAATATCTGTTCTTAATATTTCATTAGCACATTGAAACATTTGCTTTATCTTTGGTAACTTTATAAGATCTTTGCCCATCCCGACAAAATGAGATCCTTGTCCTGGGAATAAAACTATGGAAGTTTTATGTGGATCATTATCAGTTACACTTAAAAAAGTTTTTCAGTGATACTAAAAATACCTTTTGTCATATAGAGCCCATTTATATCGAGGTTTTGTTAAACATTGTGAATCCCCGGAA] consensusID : consensus_8418#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 606 fasta sequence [AGTATGAAAGCTCCATAACTGGTAATCGTTGGTTCGACGTATCCANATTGACCAGCATGATTTCAATANAGTCGATGCCTCTTTATTTCCCAGCGATTACTTTGCAATCTGGATATAAATAGTTAGCGACTTTACAACAAGGGTTTTGAATTTTGTGGCGAACCTCGCAATGATTGATAGCTGCTGCTATACCAAGTTTTAACGGGGATCCAGGATTGACGAAAACAGTAATCATTGCTCCAGCCTTCTCATCACAAGCTTTTTGCATAGCTTCTGCTCGGACACGAATAATATGCAGACCTTCTTCATACGTCAGGGCACCCGAAAACACTAAAGCACTGATCTCGCCAAGACTAAACCCTGCTGTAACCACGCAATTTTTAATTAACTTAAAACATATAGCGTGAATTATATGAGATAGAAACCTCTTCATTTTCTTCTCGAAGCTTTACAAGGGCTGCCAAAGAAATTATGAAAGTAGCTGGTTGACAATGAATGGTTTTTGATAATTTTGAAGCAGGACCCTCAAGGCAAGTACGAAGAATATCTGTTCTTAATATTTCATTAGCACATTGAAACATTTGCTTTATCTTTGGTAACTTTATA] [-] EMBL CD071634 [AGTATGAAAGCTCCATAACTGGTAATCGTTGGTTCGACGTATCCANATTGACCAGCATGATTTCAATANAGTCGATGCCTCTTTATTTCCCAGCGATTACTTTGCAATCTGGATATAAATAGTTAGCGACTTTACAACAAGGGTTTTGAATTTTGTGGCGAACCTCGCAATGATTGATAGCTGCTGCTATACCAAGTTTTAACGGGGATCCAGGATTGACGAAAACAGTAATCATTGCTCCAGCCTTCTCATCACAAGCTTTTTGCATAGCTTCTGCTCGGACACGAATAATATGCAGACCTTCTTCATACGTCAGGGCACCCGAAAACACTAAAGCACTGATCTCGCCAAGACTAAACCCTGCTGTAACCACGCAATTTTTAATTAACTTAAAACATATAGCGTGAATTATATGAGATAGAAACCTCTTCATTTTCTTCTCGAAGCTTTACAAGGGCTGCCAAAGAAATTATGAAAGTAGCTGGTTGACAATGAATGGTTTTTGATAATTTTGAAGCAGGACCCTCAAGGCAAGTACGAAGAATATCTGTTCTTAATATTTCATTAGCACATTGAAACATTTGCTTTATCTTTGGTAACTTTATA] [-] EMBL CD071635 [ TTTTTGCATAGCTTATGCTCGGACACGAATAATATGCAGACATTCTTCATACGTCAGGGCACCCGAAAACACTAAAGCACTGATCTCGCCAAGACTAAACCATGTTGTAACCACGCAATTTTTAATTAACTTAAAACATATAGCGTGAATTATATGAGATATAAACCTCTTCATTTTATTCTAGAAGCTTTACAAGGGCTGCCAAAGAAATTATGAAAGTAGCTGGTTGACAATGAATGGTTTTTGATAATTTTGAAGCAGGACCCTCAAGGCAAGTACGAAGAATATCTGTTTTTAATATTTCATTAGCACATTGAACCATTTGCTTTATCTTTGGTAACTTTATA] consensusID : consensus_8418#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence [TAAACCCTGCTGTAACCACGCAANTTTTAATTAACTCTTCATTTTCTTCTCGAAGCTTTACAAGGGCTGCCAAAGAAATTATGAAAGTAGCTGGTTGACAATGAATGGTTTTTGATAATTTTGAAGCAGGACCCTCAAGGCAAGTACGAAGAATATCTGTTCTTAATATTTCATTAGCACATTGAAACATTTGCTTTATCTTTGGTAACTTTATAAGATCTTTGCCCATCCCGACAAAATGAGATCCTTGTCCTGGGAATAAAATTATGGAAGTTTTATGTGGATCATTATCAGTTACACTTTTGTCATATAGAGCCCATTTATATCGAGGTTTTGTTAAACATTGTGAATCCCCGGAATCACTAGAAAAATTGCACCGTCTGAATGGATTGTGTGGTAAGCACTCGTAAACGATCGGTTTGGTAATATAAAATGTAGAATTCCGCATTTAATGAAAACGTTTAAAGATTGGTGATATCTTTTTCAACAC] [-] EMBL AI977700 [TAAACCCTGCTGTAACCACGCAANTTTTAATTAACTCTTCATTTTCTTCTCGAAGCTTTACAAGGGCTGCCAAAGAAATTATGAAAGTAGCTGGTTGACAATGAATGGTTTTTGATAATTTTGAAGCAGGACCCTCAAGGCAAGTACGAAGAATATCTGTTCTTAATATTTCATTAGCACATTGAAACATTTGCTTTATCTTTGGTAACTTTATAAGATCTTTGCCCATCCCGACAAAATGAGATCCTTGTCCTGGGAATAAAATTATGGAAGTTTTATGTGGATCATTATCAGTTACACTTTTGTCATATAGAGCCCATTTATATCGAGGTTTTGTTAAACATTGTGAATCCCCGGAATCACTAGAAAAATTGCACCGTCTGAATGGATTGTGTGGTAAGCACTCGTAAACGATCGGTTTGGTAATATAAAATGTAGAATTCCGCATTTAATGAAAACGTTTAAAGATTGGTGATATCTTTTTCAACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8418#0 TATCGAAGGTTCCTGANAATCTCCCATCCTGTCTAGTGAATTAGCAATAATTTTCCGGGC 60 consensus_8418#1 ------------------------------------------------------------ consensus_8418#2 ------------------------------------------------------------ consensus_8418#0 AGAGGACATCAAAGGAGTATGAAAAGCTCCATTAACTGGTAATCGTTTGGTTCGACGTAT 120 consensus_8418#1 ---------------AGTATGAAA-GCTCCAT-AACTGGTAATCGTT-GGTTCGACGTAT 42 consensus_8418#2 ------------------------------------------------------------ consensus_8418#0 TCCAAATTGACCAGCATGATTTTCAATAAAGTCGATTGCCTCTTTATT-CCCAGCGATTA 179 consensus_8418#1 -CCANATTGACCAGCATGATTT-CAATANAGTCGAT-GCCTCTTTATTTCCCAGCGATTA 99 consensus_8418#2 ----------------------------------TAAACCCTGCTGTAACCACGCAANT- 25 ** * * ** ** * * consensus_8418#0 CTTTGCAATCTGGATATAAATAGTTAGCGACTTTACAACAAGGGTTTTGAATTTTGTGGC 239 consensus_8418#1 CTTTGCAATCTGGATATAAATAGTTAGCGACTTTACAACAAGGGTTTTGAATTTTGTGGC 159 consensus_8418#2 TTTAATTAACTCTTCATTTTCTTCTCGAAGCTTTAC---AAGGGCTGCCAAAGAAATTAT 82 ** * ** ** * * ****** ***** * ** * consensus_8418#0 GAACCTCGCAATGATTGATAGCTGCTG--CTATACCAAGTTTTAACGGGGATCCAGGATT 297 consensus_8418#1 GAACCTCGCAATGATTGATAGCTGCTG--CTATACCAAGTTTTAACGGGGATCCAGGATT 217 consensus_8418#2 GAAAGTAGC--TGGTTGACAATGAATGGTTTTTGATAATTTTGAAGCAGGACCCTCAA-- 138 *** * ** ** **** * ** * * ** *** ** *** ** * consensus_8418#0 GACGAAAACAGTAATCAT-TGCTCCAGCCTTCTCATCACAAGCTTTTTGCATAGCTTCTG 356 consensus_8418#1 GACGAAAACAGTAATCAT-TGCTCCAGCCTTCTCATCACAAGCTTTTTGCATAGCTTCTG 276 consensus_8418#2 GGCAAGTACGAAGAATATCTGTTCTTAATATTTCATT---AGCACATTGA--AACATTTG 193 * * * ** * ** ** ** * **** *** *** * * * ** consensus_8418#0 CTCGGACACGAATAATATGCAGACCTTCTTCATACGTCAGGGCACCCGAAAACACTAAAG 416 consensus_8418#1 CTCGGACACGAATAATATGCAGACCTTCTTCATACGTCAGGGCACCCGAAAACACTAAAG 336 consensus_8418#2 CTTTATCTTTGGTAAC-TTTATAAGATCTTTGCCCATC-------CCGACAAAATGAGAT 245 ** * *** * * * **** * ** **** ** * * * consensus_8418#0 CACTGATCTCGCCA-AGACTAAACCCTGCTGTAACCACGCAATTTTTAATTA-ACT---- 470 consensus_8418#1 CACTGATCTCGCCA-AGACTAAACCCTGCTGTAACCACGCAATTTTTAATTA-ACTTAAA 394 consensus_8418#2 CCTTGTCCTGGGAATAAAATTATGGAAGTTTTATGTGGATCATTATCAGTTACACTTTTG 305 * ** ** * * * * * * * * ** *** * * *** *** consensus_8418#0 ---------------------------------CTTCATTTTCTTCTCGAAGCTTTACAA 497 consensus_8418#1 ACATATAGCGTGAATTATATGAGATAGAAACCTCTTCATTTTCTTCTCGAAGCTTTACAA 454 consensus_8418#2 TCATATAGAGCCCATT---------------TATATCGAGGTTTTGTTAAACATT---GT 347 ** * ** * ** ** consensus_8418#0 GGGCTGCCAAAGAAATTATGAAAGTAGCTGGTTGACAATGAATGGTTTTTGATAATTTTG 557 consensus_8418#1 GGGCTGCCAAAGAAATTATGAAAGTAGCTGGTTGACAATGAATGGTTTTTGATAATTTTG 514 consensus_8418#2 GAATCCCCGGAATCACTAGAAAAATTGCACCGTCTGAATGGATTGTGTGGTAAGCACTCG 407 * ** * * ** *** * ** * **** ** ** * * * * consensus_8418#0 AAGCAGGACCCTCAAGGCAAGTACGAGGAATATCTGTTCTTAATATTTCATTAGCACATT 617 consensus_8418#1 AAGCAGGACCCTCAAGGCAAGTACGAAGAATATCTGTTCTTAATATTTCATTAGCACATT 574 consensus_8418#2 TAA-ACGATCGGTTTGGTAA-TATAAAATGTA---GAATTCCGCATTTAATGAAAACGTT 462 * * ** * ** ** ** * ** * * **** ** * ** ** consensus_8418#0 GAAACATTTGCTTTATCTTTGGTAACTTTATAAGATCTTTGCCCATCCCGACAAAATGAG 677 consensus_8418#1 GAAACATTTGCTTTATCTTTGGTAACTTTATA---------------------------- 606 consensus_8418#2 TAAAGATTGGTGATATCTTTTTCAACAC-------------------------------- 490 *** *** * ******* *** consensus_8418#0 ATCCTTGTCCTGGGAATAAAACTATGGAAGTTTTATGTGGATCATTATCAGTTACACTTA 737 consensus_8418#1 ------------------------------------------------------------ consensus_8418#2 ------------------------------------------------------------ consensus_8418#0 AAAAAGTTTTTCAGTGATACTAAAAATACCTTTTGTCATATAGAGCCCATTTATATCGAG 797 consensus_8418#1 ------------------------------------------------------------ consensus_8418#2 ------------------------------------------------------------ consensus_8418#0 GTTTTGTTAAACATTGTGAATCCCCGGAA 826 consensus_8418#1 ----------------------------- consensus_8418#2 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||