These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_842#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [CGTATCTCAAAAATGATTCACAGAATACAGAAACCTATATCAACTCTCAAAATTATAAAACAGTGTCAATGGAAGAAACAGTCAATTGCTCAGATCTTTTATTAAATATTTCAGTTATTCAAGTAAAATCTCCCTATATCGGCTTTCTACGTTGTTTATCAACACTTCTTGGAAGACATGTTCCATATATATCCGTTCACAACCAACTGATGGTAGATCTCTGTGATATGGAATACGAAGGAGTACCACAGAATTGTCCTGATGATCCTATACCTAAAGAAATTTTGGAAAAGATTCTAAGCTTTGGTCTAGTTATTACAAACCAGTGTCGAACTGTTCATGATGATCTGGAAACGTCTCAAGTTTTAGATGCGTCTGAACCAGGAAATTTCCTGATATCAGATAAACTTCAGGATATTTTTACAAGTCTTGAAAATAATGGTCAACCATCAACACTCAAGAATTTATTACATAATATGGATTTTCAAAATTTATTGATCAGTTCACTAGCACATTTCAAAGGAATAGCACAGTTTTCAGAGCCATGGATAACAGCATTACAAACTTACTTTAATGATTC] [+] EMBL AI974959 [CGTATCTCAAAAATGATTCACAGAATACAGAAACCTATATCAACTCTCAAAATTATAAAACAGTGTCAATGGAAGAAACAGTCAATTGCTCAGATCTTTTATTAAATATTTCAGTTATTCAAGTAAAATCTCCCTATATCGGCTTTCTACGTTGTTTATCAACACTTCTTGGAAGACATGTTCCATATATATCCGTTCACAACCAACTGATGGTAGATCTCTGTGATATGGAATACGAAGGAGTACCACAGAATTGTCCTGATGATCCTATACCTAAAGAAATTTTGGAAAAGATTCTAAGCTTTGGTCTAGTTATTACAAACCAGTGTCGAACTGTTCATGATGATCTGGAAACGTCTCAAGTTTTAGATGCGTCTGAACCAGGAAATTTCCTGATATCAGATAAACTTCAGGATATTTTTACAAGTCTTGAAAATAATGGTCAACCATCAACACTCAAGAATTTATTACATAATATGGATTTTCAAAATTTATTGATCAGTTCACTAGCACATTTCAAAGGAATAGCACAGTTTTCAGAGCCATGGATAACAGCATTACAAACTTACTTTAATGATTC] consensusID : consensus_842#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [AACAGTTCGACACTGGTTTGTAATAACTAGACCAAAGCTTAGAATCTATATTTAAAGAATGAGATTAAAATTTTTTTTGATAAGTCACAGCAACAATTTCATAACTTTTGAAGTCAGTAATAATAATAATATAGAAAGGATCAAATTACTGAAGTTACTGGCTTCGATCTCTTATGTTATCATGGGTGTTCATTATTGAAAATTTTCAGCTGACTTCAGTTGTCAATGTAAGTTATCTTCCAAGAGTGGTTTGAATATCCAAGTACCAGTTCATGTGAGGAAAAGTATTTACTTACGGATTAGATGCTTTCTTCATGTACAATAGACCTTAAGTGAAGAGTTNACATANNACTACTCTANTACACTATACATATTATTCTATCAGAAAATTGTGAACATTACTATTNTACTCATTANACAGGGNGATATCAGTTTTCTATN] [+] EMBL CD139671 [AACAGTTCGACACTGGTTTGTAATAACTAGACCAAAGCTTAGAATCTATATTTAAAGAATGAGATTAAAATTTTTTTTGATAAGTCACAGCAACAATTTCATAACTTTTGAAGTCAGTAATAATAATAATATAGAAAGGATCAAATTACTGAAGTTACTGGCTTCGATCTCTTATGTTATCATGGGTGTTCATTATTGAAAATTTTCAGCTGACTTCAGTTGTCAATGTAAGTTATCTTCCAAGAGTGGTTTGAATATCCAAGTACCAGTTCATGTGAGGAAAAGTATTTACTTACGGATTAGATGCTTTCTTCATGTACAATAGACCTTAAGTGAAGAGTTNACATANNACTACTCTANTACACTATACATATTATTCTATCAGAAAATTGTGAACATTACTATTNTACTCATTANACAGGGNGATATCAGTTTTCTATN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_842#0 CGTATCTCAAAAATGATTCACAGAATACAGAAACCTATATCAACTCTCAAAATTATAAAA 60 consensus_842#1 ----------------------------------------------------------AA 2 ** consensus_842#0 CAGTGTCAATGGAAGAAACAGTCAATTGCTCAGATCTTTTATTAAATATTTCAGTTATTC 120 consensus_842#1 CAGTTCGACACTGGTTTGTAATAACTAGACCAAAGCTTAGAATCTATATTTAAAGAATGA 62 **** * * * * * * ** * *** * * ****** * ** consensus_842#0 AAGTAAAATCTCCCTATATCGGCTTTCTACGTTGTTTATCAACACTTCTTGGAAGACATG 180 consensus_842#1 GATTAAAATTTTTTTTGATAAG-TCACAGCAACAATT-TCATAACTTTT--GAAGTCAGT 118 * ****** * * ** * * * * ** *** **** * **** ** consensus_842#0 TTCCATATATATCCGTTCACAACCAACTGATGGTAGATCTCTGTGATATGGAATACGAAG 240 consensus_842#1 AATAATAATAATATAGAAAGGATCAAATTACTGAAGTTAC---TGGCTTCGATCTCTTAT 175 *** ** * * *** * * * ** * ** * ** * * consensus_842#0 GAGTACCACAGAATTGTCCTGATGATCCTATACCTAAAGA-AATTTTGGAAAAGATTCTA 299 consensus_842#1 GT-TATCATGG----GTGTTCATTATTGAAAATTTTCAGCTGACTTCAGTTGTCAATGTA 230 * ** ** * ** * ** ** * * * ** * ** * * * ** consensus_842#0 AGCTTTGGTCTAGTTATTACAAACCAGTGTCGAACTGTTCATGATGATCTGGAAACGTCT 359 consensus_842#1 AGTTATCTTCCAAGAGTGGT--TTGAATATCCAA--GTACCAGTTCATGTGAGGAA---- 282 ** * * ** * * * * ** ** ** * * * ** ** * consensus_842#0 CAAGTTTTAGATGCGTCTGAACCAGGAAATTTCCTGATATCAGATAAACTTCAGGATATT 419 consensus_842#1 -AAGTATT---TACTTACGGATTAGATGCTTTCTTCATGTACAATAGACCTTAAG----- 333 **** ** * * * * * ** **** * ** * *** ** * * * consensus_842#0 TTTACAAGTCTTGAAAATAATGGTCAACCATCAACACTCAAGAATTTATTACATAATATG 479 consensus_842#1 -TGAAGAGTTNACATANNACTACTCTANTA----CACTATACATATTATTCTATCAGA-A 387 * * *** * * * * ** * * **** * * ***** ** * * consensus_842#0 GATTTTCAAAATTTATTGATCAGTTCACTAGCACATTTCAAAGGAATAGCACAGTTTTCA 539 consensus_842#1 AATTGTGAACATT-----ACTATTNTACT----CATTANACAGGGNGATATCAGTTTTCT 438 *** * ** *** * * * *** **** * *** * ******** consensus_842#0 GAGCCATGGATAACAGCATTACAAACTTACTTTAATGATTC 580 consensus_842#1 ATN-------------------------------------- 441 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||