These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8422#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 773 fasta sequence [ATTTTTTTGTACGTACTGAGTAACACAAAGCTGTTTGAATAATTTGTCAACACAATGTTTCTTTCTAAAAAAAAAGTAATATCTGCTAGGCTCTCCGAATTGATACTGATCTTGACCTGCTATATTTTTGCGGTGATGTACATCGACACACATTCTGACAAGAATATTCATGATTTAATAAAGCAGCGGCTTTATCTTTTTGTGATGCTGCATATATTGGATTACGTGTGCAAGCTTCTCCTTTCACTAAAATACATACTTTAACTGGTTTACATCTATTAGTTTTACTCACATTTGTTGATTGAAATCGCTGTTGAATTTCAGTAGGTCTTTGACTATATAAAATTAAACATGGCCAAATATAATGGTGAACTTGACCAGCAGATGGGTCTGAATCATAACTTCTTCGATAACACTCGTCATTGTATGGATCCCCAGGTTTGGCAGCTTTGTCCACATCTGCATACCAAGTAGATTGAATTCCATTTGATTCAATGTCTAATTCTGAATCCTTTTTTCCAACCAGTAGGTGCCAAGCAAGACAACAAACTTCCCTTAGGAGGTTATCTAGAGCAGTCAGTTCCTGAGATGTCACAGGCAGTCTTATGGAAATAGGCCGTTTAACACTTGTGCCATTTATCGAAGTAATTGTAGTATGACATGCACATTCTGGTGGAGCATGACGTGAAAGACGCCTGAATGTTGCGGCTACAAGTTTATCTAACTGATCACTATTGAGCGATATGTCTGAAGCCGAGAATTGTCGCTCACCA] [+] EMBL CD091633 [ATTTTTTTGTACGTACTGAGTAACACAAAGCTGTTTGAATAATTTGTCAACACAATGTTTCTTTCTAAAAAAAAAGTAATATCTGCTAGGCTCTCCGAATTGATACTGATCTTGACCTGCTATATTTTTGCGGTGATGTACATCGACACACATTCTGACAAGAATATTCATGATTTAATAAAGCAGCGGCTTTATCTTTTTGTGATGCTGCATATATTGGATTACGTGTGCAAGCTTCTCCTTTCACTAAAATACATACTTTAACTGGTTTACATCTATTAGTTTTACTCACATTTGTTGATTGAAATCGCTGTTGAA ] [+] EMBL CD093347 [ AAGCTTCTCCTTTCACTAAAATACATACTTTAACTGGTTTACATCTATTAGTTTTACTCACATTTGTTGATTGAAATCGCTGTTGAATTTCAGTAGGTCTTTGACTATATAAAATTAAACATGGCCAAATATAATGGTGAACTTGACCAGCAGATGGGTCTGAATCATAACTTCTTCGATAACACTCGTCATTGTATGGATCCCCAGGTTTGGCAGCTTTGTCCACATCTGCATACCAAGTAGATTGAATTCCATTTGATTCAATGTCTAATTCTGAATCCTTTTTTCCAACCAGTAGGTGCCAAGCAAGACAACAAACTTCCCTTAGGAGGTTATCTAGAGCAGTCAGTTCCTGAGATGTCACAGGCAGTCTTATGGAAATAGGCCGTTTAACACTTGTGCCATTTATCGAAGTAATTGTAGTATGACATGCACATTCTGGTGGAGCATGACGTGAAAGACGCCTGAATGTTGCGGCTACAAGTTTATCTAACTGATCACTATTGAGCGATATGTCTGAAGCCGAGAATTGTCGCTCACCA] [+] EMBL CD157647 [ GCTTCTCCTTTCACTAAAATACATACTTTAACTGGTTTACATCTATTAGTTTTACTCACATTTGTTGATTGAAATCGCTGTTGAATTTCAGTAGGTCTTTGACTATATAAAATTAAACATGGCCAAATATAATGGTGAACTTGACCAGCAGATGGGTCTGAATCATAACTTCTTCGATAACACTCGTCATTGTATGGATCCCCAGGTTTGGCAGCTNTGTCCACATCTGCATACCAAGTAGAT ] [+] EMBL CD157747 [ TTCTCCTTTCACTAAAATACATACTTTAACTGGTTTACATCTATTAGTTTTACTCACATTTGTTGATTGAAATCGCTGTTGAATTTCAGTAGGTCTTTGACTATATAAAATTAAACATGGCCAAATATAATGGTGAACTTGACCAGCAGATGGGTCTGAATCATAACTTCTTCGATAACACTCGTCATTGTATGGATCCCCAGGTTTGGCAGCTTTGTCCACATCTGCATACCAAGTAGATTGAATTCCATTTGATTCAATGTCTAATTCTGAATCCTTTTT ] [-] EMBL CD163389 [ ATCTATTAGTTTTACTCACATTTGTTGATTGAAATCGCTGTTGAATTTCAGTAGGTCTTTGACTATATAAAATTAAACATGGCCAAATATAATGGTGAACTTGACCAGCAGATGGGTCTGAATCATAACTTCTTCGATAACACTCGTCATTGTATGGATCCCCAGGTTTGGCAGCTTTGTCCACATCTGCATACCAAGTAGATTGAATTCCATTTGATTCAATGTCTAATTCTGAATCCTTTTTTCCAACCAGTAGGTGCCAAGCAAGACAACAAACTTCCCTTAGGAGGTTATCTAGAGCAGTCAGTTCCTGAGATGTCACAGGCAGTCTTATGGAAATAGGCCGTTTAACACTTGTGCCATTTATCGAAGTAATTGTAGTATGACATGCA ] consensusID : consensus_8422#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence [ATAAACTAAATTGGCAAATACGCGCTGTATAAACTCTTCTGAACTTAAACATTATGTAATACATTTACTATTCGTTGGAAAAACCAACGAAACTAAGAAATTATTGAAAATTGTGTAAAATAAGAAACATTACCTAAAAGAAAAGTAATAACTGCTAGGCTCTCCGAATTGATACTGATCTTGACCTGCTATATTTTTGCGGTGATGTACATCGACACACATTCTGACAAGAATATTCATGATTTAATAAAGCAGCGGCTTTATCTTTTTGTGATGCTGCATATATTGGATTACG] [-] EMBL CD095689 [ATAAACTAAATTGGCAAATACGCGCTGTATAAACTCTTCTGAACTTAAACATTATGTAATACATTTACTATTCGTTGGAAAAACCAACGAAACTAAGAAATTATTGAAAATTGTGTAAAATAAGAAACATTACCTAAAAGAAAAGTAATAACTGCTAGGCTCTCCGAATTGATACTGATCTTGACCTGCTATATTTTTGCGGTGATGTACATCGACACACATTCTGACAAGAATATTCATGATTTAATAAAGCAGCGGCTTTATCTTTTTGTGATGCTGCATATATTGGATTACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8422#0 ------------------------------------------------------------ consensus_8422#1 ATAAACTAAATTGGCAAATACGCGCTGTATAAACTCTTCTGAACTTAAACATTATGTAAT 60 consensus_8422#0 ---------ATTTTTTTGTACGTACTGAGTAACACAAAGCTGTTTGAATAATTTGTCAAC 51 consensus_8422#1 ACATTTACTATTCGTTGGAAAAACCAACGAAACTAAGAAATTATTGAAAATTGTGTAAAA 120 *** ** * * * * *** * * * ***** * * *** ** consensus_8422#0 ACAATGTTTCTTTCTAAAAAAAAAGTAATATCTGCTAGGCTCTCCGAATTGATACTGATC 111 consensus_8422#1 TAAGAAACATTACCTAAAAGAAAAGTAATAACTGCTAGGCTCTCCGAATTGATACTGATC 180 * * ****** ********** ***************************** consensus_8422#0 TTGACCTGCTATATTTTTGCGGTGATGTACATCGACACACATTCTGACAAGAATATTCAT 171 consensus_8422#1 TTGACCTGCTATATTTTTGCGGTGATGTACATCGACACACATTCTGACAAGAATATTCAT 240 ************************************************************ consensus_8422#0 GATTTAATAAAGCAGCGGCTTTATCTTTTTGTGATGCTGCATATATTGGATTACGTGTGC 231 consensus_8422#1 GATTTAATAAAGCAGCGGCTTTATCTTTTTGTGATGCTGCATATATTGGATTACG----- 295 ******************************************************* consensus_8422#0 AAGCTTCTCCTTTCACTAAAATACATACTTTAACTGGTTTACATCTATTAGTTTTACTCA 291 consensus_8422#1 ------------------------------------------------------------ consensus_8422#0 CATTTGTTGATTGAAATCGCTGTTGAATTTCAGTAGGTCTTTGACTATATAAAATTAAAC 351 consensus_8422#1 ------------------------------------------------------------ consensus_8422#0 ATGGCCAAATATAATGGTGAACTTGACCAGCAGATGGGTCTGAATCATAACTTCTTCGAT 411 consensus_8422#1 ------------------------------------------------------------ consensus_8422#0 AACACTCGTCATTGTATGGATCCCCAGGTTTGGCAGCTTTGTCCACATCTGCATACCAAG 471 consensus_8422#1 ------------------------------------------------------------ consensus_8422#0 TAGATTGAATTCCATTTGATTCAATGTCTAATTCTGAATCCTTTTTTCCAACCAGTAGGT 531 consensus_8422#1 ------------------------------------------------------------ consensus_8422#0 GCCAAGCAAGACAACAAACTTCCCTTAGGAGGTTATCTAGAGCAGTCAGTTCCTGAGATG 591 consensus_8422#1 ------------------------------------------------------------ consensus_8422#0 TCACAGGCAGTCTTATGGAAATAGGCCGTTTAACACTTGTGCCATTTATCGAAGTAATTG 651 consensus_8422#1 ------------------------------------------------------------ consensus_8422#0 TAGTATGACATGCACATTCTGGTGGAGCATGACGTGAAAGACGCCTGAATGTTGCGGCTA 711 consensus_8422#1 ------------------------------------------------------------ consensus_8422#0 CAAGTTTATCTAACTGATCACTATTGAGCGATATGTCTGAAGCCGAGAATTGTCGCTCAC 771 consensus_8422#1 ------------------------------------------------------------ consensus_8422#0 CA 773 consensus_8422#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||