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Schistosoma mansoni
cluster # 8439 cluster # 8439       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8439#0 length = 725 sequences # 4  
consensus_8439#1 length = 364 sequences # 2  

consensusID : consensus_8439#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 725
fasta sequence
                              [CTTTGAAAGTAGCTTTATTTCTGAGAAAATCACGATGTTTAGTGCGCCCAGAAGGATTGTATTCCAAAATACCAATTACATCCAACAACATATCATCAGCGAATAAATTTTCATAGAGACTATGTTTGTTGACCAATATAAGTTGTCGCATTATTTCGTAAAGATGATGCAACGATTCCATATCCTCCAGATCTTCTGCTTTGTGAAAGACATCAACTAACTGATGGAGATAATTAGTTGACTCTAAAAAGGCTATCAATCGCTCGCGTTTCGGAGGTGATGCGACAGCTTGACTAACTAGGTCAACAACTTCTTCAAGACGGCTCAGTTCACAAGGTGGAAGACTAAGAGGCTGGATACTTTGCATCATTGTAAGCGTATACCCATCCGTGTCATCGACGTCATCTGACTCGTCAACAACCTCTTGAGTAATCTCTAC-CGATGGATCCTTTCCCTGTACAGCACAAATTTTTTCCCATACATCATCACAACCAACTTTCTCTTGGAAAGACAGAGCTAAATCCATATTTTCACCTTCTGACCAAACAATTAGTGTATCTTGCTGCTTTTGATATGCTGTATCTGGCTGTATTTTTGACTCAAGAAGATAAGATCCATCTGTTTCTGAAATTACTACTAGGGCCATGTTCTCCTGCTCAGTATACAAGGCTGACACGTGACCAGTGCCCTTATCGTCCCATAGTCGTTCATCATTTAACATGTAC]

[+] EMBL CD091471             [CTTTGAAAGTAGCTTTATTTCTGAGAAAATCACGATGTTTAGTGCGCCCAGAAGGATTGTATTCCAAAATACCAATTACATCCAACAACATATCATCAGCGAATAAATTTTCATAGAGACTATGTTTGTTGACCAATATAAGTTGTCGCATTATTTCGTAAAGATGATGCAACGATTCCATATCCTCCAGATCTTCTGCTTTGTGAAAGACATCAACTAACTGATGGAGATAATTAGTTGACTCTAAAAAGGCTATCAATCGCTCGCGTTTCGGAGGTGATGCGACAGCTTGACTAACTAGGTCAACAACTTCTTCAAGACGGCTCAGTTCACAAGGTGGAAGACTAAG                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD177828             [                                                                                                                                                          gttgcAAAGATGATGCAACGATTCCATATCCTCCAGATCTTCTGCTGTGTGAAAGACATCAACTAACTGATGGAGATAATTAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD157241             [                                                                                                                                                                                                                                                                                                          TAGGTCAACAACTTCTTCAAGACGGCTCAGTTCACAAGGTGGAAGACTAAGAGGCTGGATACTTTGCATCATTGTAAGCGTATACCCATCCGTGTCATCGACGTCATCTGACTCGTCAACAACCTCTTGAGTAATCTCTAC CGATGGATCCTTTCCCTGTACAGCACAAATTTTTTCCCATACATCATCACAACCAACTTTCTCTTGGAAAGACAGAGCTAAATCCATATTTTCACCTTCTGACCAAACAATTAGTGTATCTTGCTGCTTTTGATATGCTGTATCTGGCTGTATTTTTGACTCAAGAAGATAAGATCCATCTGTTTCTGAAATTACTACTAGGGCCATGTTCTCCTGCTCAGTATACAAGGCTGACACGTGACCAGTGCCCTTATCGTCCCATAGTCGTTCATCATTTAACATGTAC]
[-] EMBL CD140084             [                                                                                                                                                                                                                                                                                                                                                        CTAAGAGGCTGGATACTTTGCATCATTGTAGGCGTATACCCATCCGTGTCATCGACGTCATCTGACTCGTCGACAACCTCTTGAGTAATCTCTACTCGATGGAT                                                                                                                                                                                                                                                                                      ]


>consensus_8439#0 CTTTGAAAGTAGCTTTATTTCTGAGAAAATCACGATGTTTAGTGCGCCCAGAAGGATTGT ATTCCAAAATACCAATTACATCCAACAACATATCATCAGCGAATAAATTTTCATAGAGAC TATGTTTGTTGACCAATATAAGTTGTCGCATTATTTCGTAAAGATGATGCAACGATTCCA TATCCTCCAGATCTTCTGCTTTGTGAAAGACATCAACTAACTGATGGAGATAATTAGTTG ACTCTAAAAAGGCTATCAATCGCTCGCGTTTCGGAGGTGATGCGACAGCTTGACTAACTA GGTCAACAACTTCTTCAAGACGGCTCAGTTCACAAGGTGGAAGACTAAGAGGCTGGATAC TTTGCATCATTGTAAGCGTATACCCATCCGTGTCATCGACGTCATCTGACTCGTCAACAA CCTCTTGAGTAATCTCTACCGATGGATCCTTTCCCTGTACAGCACAAATTTTTTCCCATA CATCATCACAACCAACTTTCTCTTGGAAAGACAGAGCTAAATCCATATTTTCACCTTCTG ACCAAACAATTAGTGTATCTTGCTGCTTTTGATATGCTGTATCTGGCTGTATTTTTGACT CAAGAAGATAAGATCCATCTGTTTCTGAAATTACTACTAGGGCCATGTTCTCCTGCTCAG TATACAAGGCTGACACGTGACCAGTGCCCTTATCGTCCCATAGTCGTTCATCATTTAACA TGTAC



consensusID : consensus_8439#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 364
fasta sequence
                              [GTAAGAAACTGAGAAAACTTTCTTTCTGATCTGTTTGGATGGAAATATTACAAAATTCCTTTACAAAGAGCGATAGGTCTCTCTGCGATGAGTCAGATCTGTATCCGCCGCTTTCAAACGTGTAAAAAGTCGACACATAAACTCTTCATCTTCCTGAAGAGCCCGAATAATCTCCATCTTGTTTATAGAAATAAATGCTTTAAGTTGGGAAAGAGCGTGTTCGTCGAATAAACAAGGAGGTGGGAGACAGCAGTCTTGTATGTACTGAACGCGATATGTTTGATGTATTTTTGTTACCAAATCTGTATTATGCAAAGGCAAAACTTCTTTGAAAGTAGCTTTATTTCTGAGAAAATCACGATGT]

[+] EMBL CD181160             [GTAAGAAACTGAGAAAACTTTCTTTCTGATCTGTTTGGATGGAAATATTACAAAATTCCTTTACAAAGAGCGATAGGTCTCTCTGCGATGAGTCAGATCTGTATCCGCCGCTTTCAAACGTGTAAAAAGTCGACACATAAACTCTTCATCTTCCTGAAGAGCCCGAATAATCTCCATCTTGTTTATAGAAATAAATGCTTTAAGTTGGGAAAGAGCGTGTTCGTCGAATAAACAAGGAGGTGGGAGACAGCAGTCTTGTATGTACTGAACGCGATATGTTTGATGTATTTTTGTTACCAAA                                                               ]
[-] EMBL CD188835             [                                                                                                                                                                                      TTATAGAAATAAATGCTTTAAGTTGGGAAAGAGCGTGTTCGTCGAATAAACAAGGAGGTGGGAGACAGCAGTCTTGTATGTACTGAACGCGATATGTTTGATGTATTTTTGTTACCAAATCTGTATTATGCAAAGGCAAAACTTCTTTGAAAGTAGCTTTATTTCTGAGAAAATCACGATGT]


>consensus_8439#1 GTAAGAAACTGAGAAAACTTTCTTTCTGATCTGTTTGGATGGAAATATTACAAAATTCCT TTACAAAGAGCGATAGGTCTCTCTGCGATGAGTCAGATCTGTATCCGCCGCTTTCAAACG TGTAAAAAGTCGACACATAAACTCTTCATCTTCCTGAAGAGCCCGAATAATCTCCATCTT GTTTATAGAAATAAATGCTTTAAGTTGGGAAAGAGCGTGTTCGTCGAATAAACAAGGAGG TGGGAGACAGCAGTCTTGTATGTACTGAACGCGATATGTTTGATGTATTTTTGTTACCAA ATCTGTATTATGCAAAGGCAAAACTTCTTTGAAAGTAGCTTTATTTCTGAGAAAATCACG ATGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8439#0      CTTTGAAAGTAGCTTTATTTCTGAGAAAATCACGATGTTTAGTGCGCCCAGAAGGATTGT 60
consensus_8439#1      ------------------------------------------------------------
                                                                                  

consensus_8439#0      ATTCCAAAATACCAATTACATCCAACAACATATCATCAGCGAATAAATTTTCATAGAGAC 120
consensus_8439#1      ------------------------------------------------------------
                                                                                  

consensus_8439#0      TATGTTTGTTGACCAATATAAGTTGTCGCATTATTTCGTAAAGATGATGCAACGATTCCA 180
consensus_8439#1      ------------------------------------------------------------
                                                                                  

consensus_8439#0      TATCCTCCAGATCTTCTGCTTTGTGAAAGACATCAACTAACTGATGGAGATAATTAGTTG 240
consensus_8439#1      ------------------------------------------------------------
                                                                                  

consensus_8439#0      ACTCTAAAAAGGCTATCAATCGCTCGCGTTTCGGAGGTGATGCGACAGCTTGACTAACTA 300
consensus_8439#1      -------------------------------------------------GTAAGAAACTG 11
                                                                        * *  **** 

consensus_8439#0      GGTCAACAACTTCTTCAAGACGGCTCAGTTCACAAGGTGGAAGACTAAGAGGCTGGATAC 360
consensus_8439#1      AGAAAACTTTCTTTCTGATCTGTTTGGATGGAAATATTACAAAATTCCTTTACAAAGAGC 71
                       *  ***    * *   *   *  *   *  * *   *  ** * *      *      *

consensus_8439#0      TTTGCATCATTGTAAGCGTATACCCATCCGTGTCATCGACGTCATCTGACTCGTCAACAA 420
consensus_8439#1      GATAGGTCTCTCTGCGATGAGTCAGATCTGTATC--CGCCGCTTTCAAACGTGT-AAAAA 128
                        *   **  * *  *   *  *  *** ** **  ** **   **  **  ** ** **

consensus_8439#0      CCTCTTGAGTAATCTCTACCGATGGATCCTTTCCCTGTACAGCACAAATTTTTTCCCATA 480
consensus_8439#1      GTCGACACATAAACTCT---------TCATCTTCCTGAAGAGCCCGAATAATCTCCATCT 179
                               *** ****         ** * * **** * *** * ***  * ***    

consensus_8439#0      CATCATCACAACCAACTTTCTCTTGGAAAGACAGAGCTAAATCCATATTTTCACCTTCTG 540
consensus_8439#1      TGTTTATAGAAATAAATGCTTTAAGTTGGGAAAGAGCGTGTTCGTCGAATAAACAAGGAG 239
                        *    * **  ** *   *   *    ** *****    **      *  **     *

consensus_8439#0      ACCAAACAATTAGTGTATCTTGC-TGCTTTTGATATGCTGTATCTGGCTGTATTTTTGAC 599
consensus_8439#1      GTGGGAGA--CAGCA-GTCTTGTATGTACTGAACGCGATATGTTTGA-TGTATTTTTGTT 295
                           * *   **    *****  **   *  *   * * * * **  **********  

consensus_8439#0      TCAAGAAGATAAGATCCATCTGTTTCTGAAATTACTACTAGGGCCATGTTCTCCTGCTCA 659
consensus_8439#1      ACCAAA---TCTGTATTATGCAAAGGCAAAACTTCTTTGAAAGT--AGCTTTATTTCTGA 350
                       * * *   *  *    **         *** * **   *  *    * * *  * ** *

consensus_8439#0      GTATACAAGGCTGACACGTGACCAGTGCCCTTATCGTCCCATAGTCGTTCATCATTTAAC 719
consensus_8439#1      GAAAATCACGATGT---------------------------------------------- 364
                      * * *  * * **                                               

consensus_8439#0      ATGTAC 725
consensus_8439#1      ------
                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)