These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8439#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 725 fasta sequence [CTTTGAAAGTAGCTTTATTTCTGAGAAAATCACGATGTTTAGTGCGCCCAGAAGGATTGTATTCCAAAATACCAATTACATCCAACAACATATCATCAGCGAATAAATTTTCATAGAGACTATGTTTGTTGACCAATATAAGTTGTCGCATTATTTCGTAAAGATGATGCAACGATTCCATATCCTCCAGATCTTCTGCTTTGTGAAAGACATCAACTAACTGATGGAGATAATTAGTTGACTCTAAAAAGGCTATCAATCGCTCGCGTTTCGGAGGTGATGCGACAGCTTGACTAACTAGGTCAACAACTTCTTCAAGACGGCTCAGTTCACAAGGTGGAAGACTAAGAGGCTGGATACTTTGCATCATTGTAAGCGTATACCCATCCGTGTCATCGACGTCATCTGACTCGTCAACAACCTCTTGAGTAATCTCTAC-CGATGGATCCTTTCCCTGTACAGCACAAATTTTTTCCCATACATCATCACAACCAACTTTCTCTTGGAAAGACAGAGCTAAATCCATATTTTCACCTTCTGACCAAACAATTAGTGTATCTTGCTGCTTTTGATATGCTGTATCTGGCTGTATTTTTGACTCAAGAAGATAAGATCCATCTGTTTCTGAAATTACTACTAGGGCCATGTTCTCCTGCTCAGTATACAAGGCTGACACGTGACCAGTGCCCTTATCGTCCCATAGTCGTTCATCATTTAACATGTAC] [+] EMBL CD091471 [CTTTGAAAGTAGCTTTATTTCTGAGAAAATCACGATGTTTAGTGCGCCCAGAAGGATTGTATTCCAAAATACCAATTACATCCAACAACATATCATCAGCGAATAAATTTTCATAGAGACTATGTTTGTTGACCAATATAAGTTGTCGCATTATTTCGTAAAGATGATGCAACGATTCCATATCCTCCAGATCTTCTGCTTTGTGAAAGACATCAACTAACTGATGGAGATAATTAGTTGACTCTAAAAAGGCTATCAATCGCTCGCGTTTCGGAGGTGATGCGACAGCTTGACTAACTAGGTCAACAACTTCTTCAAGACGGCTCAGTTCACAAGGTGGAAGACTAAG ] [+] EMBL CD177828 [ gttgcAAAGATGATGCAACGATTCCATATCCTCCAGATCTTCTGCTGTGTGAAAGACATCAACTAACTGATGGAGATAATTAG ] [+] EMBL CD157241 [ TAGGTCAACAACTTCTTCAAGACGGCTCAGTTCACAAGGTGGAAGACTAAGAGGCTGGATACTTTGCATCATTGTAAGCGTATACCCATCCGTGTCATCGACGTCATCTGACTCGTCAACAACCTCTTGAGTAATCTCTAC CGATGGATCCTTTCCCTGTACAGCACAAATTTTTTCCCATACATCATCACAACCAACTTTCTCTTGGAAAGACAGAGCTAAATCCATATTTTCACCTTCTGACCAAACAATTAGTGTATCTTGCTGCTTTTGATATGCTGTATCTGGCTGTATTTTTGACTCAAGAAGATAAGATCCATCTGTTTCTGAAATTACTACTAGGGCCATGTTCTCCTGCTCAGTATACAAGGCTGACACGTGACCAGTGCCCTTATCGTCCCATAGTCGTTCATCATTTAACATGTAC] [-] EMBL CD140084 [ CTAAGAGGCTGGATACTTTGCATCATTGTAGGCGTATACCCATCCGTGTCATCGACGTCATCTGACTCGTCGACAACCTCTTGAGTAATCTCTACTCGATGGAT ] consensusID : consensus_8439#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 364 fasta sequence [GTAAGAAACTGAGAAAACTTTCTTTCTGATCTGTTTGGATGGAAATATTACAAAATTCCTTTACAAAGAGCGATAGGTCTCTCTGCGATGAGTCAGATCTGTATCCGCCGCTTTCAAACGTGTAAAAAGTCGACACATAAACTCTTCATCTTCCTGAAGAGCCCGAATAATCTCCATCTTGTTTATAGAAATAAATGCTTTAAGTTGGGAAAGAGCGTGTTCGTCGAATAAACAAGGAGGTGGGAGACAGCAGTCTTGTATGTACTGAACGCGATATGTTTGATGTATTTTTGTTACCAAATCTGTATTATGCAAAGGCAAAACTTCTTTGAAAGTAGCTTTATTTCTGAGAAAATCACGATGT] [+] EMBL CD181160 [GTAAGAAACTGAGAAAACTTTCTTTCTGATCTGTTTGGATGGAAATATTACAAAATTCCTTTACAAAGAGCGATAGGTCTCTCTGCGATGAGTCAGATCTGTATCCGCCGCTTTCAAACGTGTAAAAAGTCGACACATAAACTCTTCATCTTCCTGAAGAGCCCGAATAATCTCCATCTTGTTTATAGAAATAAATGCTTTAAGTTGGGAAAGAGCGTGTTCGTCGAATAAACAAGGAGGTGGGAGACAGCAGTCTTGTATGTACTGAACGCGATATGTTTGATGTATTTTTGTTACCAAA ] [-] EMBL CD188835 [ TTATAGAAATAAATGCTTTAAGTTGGGAAAGAGCGTGTTCGTCGAATAAACAAGGAGGTGGGAGACAGCAGTCTTGTATGTACTGAACGCGATATGTTTGATGTATTTTTGTTACCAAATCTGTATTATGCAAAGGCAAAACTTCTTTGAAAGTAGCTTTATTTCTGAGAAAATCACGATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8439#0 CTTTGAAAGTAGCTTTATTTCTGAGAAAATCACGATGTTTAGTGCGCCCAGAAGGATTGT 60 consensus_8439#1 ------------------------------------------------------------ consensus_8439#0 ATTCCAAAATACCAATTACATCCAACAACATATCATCAGCGAATAAATTTTCATAGAGAC 120 consensus_8439#1 ------------------------------------------------------------ consensus_8439#0 TATGTTTGTTGACCAATATAAGTTGTCGCATTATTTCGTAAAGATGATGCAACGATTCCA 180 consensus_8439#1 ------------------------------------------------------------ consensus_8439#0 TATCCTCCAGATCTTCTGCTTTGTGAAAGACATCAACTAACTGATGGAGATAATTAGTTG 240 consensus_8439#1 ------------------------------------------------------------ consensus_8439#0 ACTCTAAAAAGGCTATCAATCGCTCGCGTTTCGGAGGTGATGCGACAGCTTGACTAACTA 300 consensus_8439#1 -------------------------------------------------GTAAGAAACTG 11 * * **** consensus_8439#0 GGTCAACAACTTCTTCAAGACGGCTCAGTTCACAAGGTGGAAGACTAAGAGGCTGGATAC 360 consensus_8439#1 AGAAAACTTTCTTTCTGATCTGTTTGGATGGAAATATTACAAAATTCCTTTACAAAGAGC 71 * *** * * * * * * * * * ** * * * * consensus_8439#0 TTTGCATCATTGTAAGCGTATACCCATCCGTGTCATCGACGTCATCTGACTCGTCAACAA 420 consensus_8439#1 GATAGGTCTCTCTGCGATGAGTCAGATCTGTATC--CGCCGCTTTCAAACGTGT-AAAAA 128 * ** * * * * * *** ** ** ** ** ** ** ** ** ** consensus_8439#0 CCTCTTGAGTAATCTCTACCGATGGATCCTTTCCCTGTACAGCACAAATTTTTTCCCATA 480 consensus_8439#1 GTCGACACATAAACTCT---------TCATCTTCCTGAAGAGCCCGAATAATCTCCATCT 179 *** **** ** * * **** * *** * *** * *** consensus_8439#0 CATCATCACAACCAACTTTCTCTTGGAAAGACAGAGCTAAATCCATATTTTCACCTTCTG 540 consensus_8439#1 TGTTTATAGAAATAAATGCTTTAAGTTGGGAAAGAGCGTGTTCGTCGAATAAACAAGGAG 239 * * ** ** * * * ** ***** ** * ** * consensus_8439#0 ACCAAACAATTAGTGTATCTTGC-TGCTTTTGATATGCTGTATCTGGCTGTATTTTTGAC 599 consensus_8439#1 GTGGGAGA--CAGCA-GTCTTGTATGTACTGAACGCGATATGTTTGA-TGTATTTTTGTT 295 * * ** ***** ** * * * * * * ** ********** consensus_8439#0 TCAAGAAGATAAGATCCATCTGTTTCTGAAATTACTACTAGGGCCATGTTCTCCTGCTCA 659 consensus_8439#1 ACCAAA---TCTGTATTATGCAAAGGCAAAACTTCTTTGAAAGT--AGCTTTATTTCTGA 350 * * * * * ** *** * ** * * * * * * ** * consensus_8439#0 GTATACAAGGCTGACACGTGACCAGTGCCCTTATCGTCCCATAGTCGTTCATCATTTAAC 719 consensus_8439#1 GAAAATCACGATGT---------------------------------------------- 364 * * * * * ** consensus_8439#0 ATGTAC 725 consensus_8439#1 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||